Wall clock time and date at job start Tue Mar 31 2020 12:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 C 1.50692 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.37481 * 122.45299 * 265.02870 * 4 3 2 6 6 C 1.36650 * 113.29647 * 179.97438 * 5 4 3 7 7 C 1.46578 * 125.45456 * 179.97438 * 6 5 4 8 8 O 1.21701 * 120.00160 * 352.14012 * 7 6 5 9 9 N 1.34780 * 119.99817 * 172.14140 * 7 6 5 10 10 C 1.46491 * 120.00276 * 1.95570 * 9 7 6 11 11 C 1.50702 * 109.47503 * 82.22335 * 10 9 7 12 12 H 1.08003 * 119.99393 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00350 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99830 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00076 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47279 * 59.99961 * 15 13 11 17 17 H 1.48503 * 109.47016 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47136 * 299.99663 * 15 13 11 19 19 C 1.46500 * 119.99589 * 181.95167 * 9 7 6 20 20 C 1.53007 * 109.47021 * 85.09592 * 19 9 7 21 21 C 1.47197 * 109.46743 * 179.97438 * 20 19 9 22 22 N 9.13196 * 134.14970 * 306.99182 * 4 1 2 23 23 S 1.75825 * 109.08466 * 359.97438 * 6 5 4 24 24 C 1.33819 * 122.44960 * 84.73643 * 4 3 2 25 25 C 1.50705 * 124.52000 * 0.02562 * 24 4 3 26 26 H 1.08999 * 109.46564 * 299.99723 * 1 2 3 27 27 H 1.09003 * 109.46837 * 59.99606 * 1 2 3 28 28 H 1.08994 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46987 * 240.00627 * 2 1 3 30 30 H 1.08998 * 109.47527 * 120.00535 * 2 1 3 31 31 H 1.09008 * 109.46609 * 60.00396 * 3 2 1 32 32 H 1.08998 * 109.47289 * 300.00681 * 3 2 1 33 33 H 1.07995 * 123.34639 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47600 * 202.23158 * 10 9 7 35 35 H 1.09004 * 109.47251 * 322.22590 * 10 9 7 36 36 H 0.96998 * 120.00041 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.46974 * 205.09093 * 19 9 7 38 38 H 1.08998 * 109.47673 * 325.08901 * 19 9 7 39 39 H 1.08994 * 109.46633 * 299.99361 * 20 19 9 40 40 H 1.08996 * 109.47144 * 59.99605 * 20 19 9 41 41 H 1.09000 * 109.46842 * 89.99520 * 25 24 4 42 42 H 1.08995 * 109.46676 * 209.99365 * 25 24 4 43 43 H 1.08992 * 109.46999 * 329.99888 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2843 1.5432 1.1567 6 6 5.6334 1.5237 0.9407 7 6 6.6624 1.6147 1.9806 8 8 6.3461 1.8604 3.1298 9 7 7.9589 1.4262 1.6641 10 6 8.3441 1.1729 0.2736 11 6 8.4416 2.4817 -0.4671 12 1 8.2375 3.4095 0.0468 13 6 8.7915 2.4948 -1.8007 14 7 9.0405 1.3651 -2.4262 15 14 8.9130 4.1172 -2.7185 16 1 9.9361 4.9770 -2.0709 17 1 9.3034 3.8604 -4.1281 18 1 7.5969 4.8040 -2.6862 19 6 8.9828 1.4748 2.7107 20 6 9.0992 0.1011 3.3744 21 6 10.1285 0.1497 4.4256 22 7 10.9244 0.1843 5.2336 23 16 5.9373 1.3721 -0.7845 24 6 4.2655 1.3387 -1.1235 25 6 3.6765 1.2118 -2.5049 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.8411 1.6283 2.1378 34 1 9.3104 0.6693 0.2502 35 1 7.5937 0.5414 -0.2021 36 1 9.2863 1.3742 -3.3645 37 1 9.9413 1.7471 2.2688 38 1 8.7035 2.2171 3.4583 39 1 8.1408 -0.1712 3.8163 40 1 9.3787 -0.6412 2.6268 41 1 3.5349 2.2046 -2.9320 42 1 4.3535 0.6375 -3.1371 43 1 2.7152 0.7018 -2.4445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078350162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:38 Heat of formation + Delta-G solvation = -10.138736 kcal Electronic energy + Delta-G solvation = -24590.493243 eV Core-core repulsion = 21147.316261 eV Total energy + Delta-G solvation = -3443.176982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84524 -39.38087 -37.91755 -36.82116 -34.95525 -34.79881 -33.10629 -32.15354 -29.34092 -29.02198 -26.99521 -25.25560 -24.97947 -23.52106 -22.34601 -20.41721 -19.02086 -18.96408 -18.59441 -18.31250 -17.17526 -16.75574 -16.35340 -15.91429 -15.89298 -15.49841 -15.33608 -14.92653 -14.56687 -14.40629 -14.32229 -14.17691 -13.78017 -13.70004 -13.62327 -13.51951 -13.29224 -12.99166 -12.85526 -12.76653 -12.73463 -12.51884 -12.45593 -12.13816 -12.00756 -11.85596 -11.80958 -11.73890 -11.42978 -10.93624 -10.58008 -10.48491 -9.69231 -9.13900 -8.92161 -8.18103 -6.23064 -0.10769 1.06744 1.44084 1.49911 1.53596 1.54468 1.61175 1.69491 1.77962 2.21751 2.40220 2.48107 3.15114 3.15847 3.80459 4.10274 4.11493 4.13146 4.23641 4.29200 4.40850 4.50128 4.52262 4.74371 4.79158 4.79726 4.81854 4.83164 4.89330 4.98284 5.00492 5.10796 5.14576 5.19102 5.24180 5.32205 5.34589 5.56622 5.65750 5.72767 5.80544 5.86396 5.98938 6.46188 6.53546 6.78745 7.26317 7.40277 8.85495 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.005400 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.518772 B = 5183.706264 C = 7631.221451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.053 4.053 4 C -0.140 4.140 5 C -0.068 4.068 6 C -0.318 4.318 7 C 0.589 3.411 8 O -0.585 6.585 9 N -0.595 5.595 10 C 0.233 3.767 11 C -0.543 4.543 12 H 0.051 0.949 13 C 0.055 3.945 14 N -0.893 5.893 15 Si 0.925 3.075 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.273 1.273 19 C 0.126 3.874 20 C -0.032 4.032 21 C 0.246 3.754 22 N -0.487 5.487 23 S 0.353 5.647 24 C -0.282 4.282 25 C -0.078 4.078 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.272 0.728 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 -3.764 -1.599 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.092 4.092 4 C -0.151 4.151 5 C -0.103 4.103 6 C -0.439 4.439 7 C 0.380 3.620 8 O -0.469 6.469 9 N -0.324 5.324 10 C 0.110 3.890 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.149 4.149 14 N -0.530 5.530 15 Si 0.751 3.249 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.198 1.198 19 C 0.001 3.999 20 C -0.073 4.073 21 C -0.071 4.071 22 N -0.166 5.166 23 S 0.631 5.369 24 C -0.402 4.402 25 C -0.136 4.136 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.001 -3.774 -0.957 9.807 hybrid contribution -1.123 1.110 0.103 1.582 sum -10.123 -2.664 -0.854 10.503 Atomic orbital electron populations 1.21758 0.94502 1.02055 1.02175 1.21468 0.96389 0.95709 1.01750 1.20284 0.88531 0.97710 1.02645 1.18595 0.97834 1.07884 0.90798 1.20467 0.90886 0.99371 0.99603 1.24567 0.97813 1.22158 0.99396 1.17223 0.82328 0.75809 0.86647 1.90692 1.82356 1.52490 1.21377 1.47967 1.05233 1.69183 1.10012 1.19578 0.97069 0.96518 0.75792 1.21451 1.48115 0.93211 0.95636 0.93061 1.25190 0.93944 0.98260 0.97551 1.69920 1.45011 1.26430 1.11680 0.86100 0.78842 0.81654 0.78303 1.20241 1.20333 1.19820 1.21244 0.92406 0.95814 0.90423 1.19706 0.94277 1.00634 0.92673 1.29094 0.93062 0.91726 0.93221 1.81154 1.12607 1.10066 1.12726 1.85993 0.94637 1.60549 0.95770 1.25796 1.05775 1.07727 1.00890 1.20338 1.01141 1.02661 0.89503 0.92527 0.92115 0.92185 0.92190 0.92919 0.91296 0.90631 0.84492 0.92756 0.93794 0.91875 0.88494 0.90698 0.86543 0.84762 0.90708 0.91589 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.35 5.85 30.60 0.18 -2.17 16 3 C -0.05 -1.22 4.82 29.85 0.14 -1.08 16 4 C -0.14 -4.28 5.04 -21.05 -0.11 -4.39 16 5 C -0.07 -2.37 9.79 21.72 0.21 -2.15 16 6 C -0.32 -12.36 6.23 24.08 0.15 -12.21 16 7 C 0.59 23.73 7.53 86.42 0.65 24.38 16 8 O -0.58 -25.30 16.50 -4.35 -0.07 -25.37 16 9 N -0.59 -21.97 2.49 -830.99 -2.07 -24.04 16 10 C 0.23 9.42 4.72 85.64 0.40 9.82 16 11 C -0.54 -24.51 6.94 25.60 0.18 -24.33 16 12 H 0.05 2.47 7.81 -2.91 -0.02 2.44 16 13 C 0.06 2.50 5.01 84.65 0.42 2.92 16 14 N -0.89 -41.64 13.29 21.45 0.28 -41.35 16 15 Si 0.92 37.68 29.54 68.60 2.03 39.71 16 16 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 C 0.13 3.81 5.30 86.38 0.46 4.27 16 20 C -0.03 -0.76 5.99 28.79 0.17 -0.59 16 21 C 0.25 6.67 15.43 89.46 1.38 8.05 16 22 N -0.49 -15.68 18.53 19.99 0.37 -15.31 16 23 S 0.35 13.34 15.80 -56.49 -0.89 12.45 16 24 C -0.28 -8.98 6.28 24.68 0.15 -8.82 16 25 C -0.08 -1.96 9.71 71.24 0.69 -1.27 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.24 7.21 -2.38 -0.02 1.22 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.54 8.10 -2.38 -0.02 1.52 16 32 H 0.08 1.59 7.48 -2.39 -0.02 1.58 16 33 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.05 2.20 8.01 -2.39 -0.02 2.18 16 35 H 0.05 1.86 4.50 -21.19 -0.10 1.77 16 36 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 37 H 0.10 2.81 8.03 -2.39 -0.02 2.79 16 38 H 0.07 2.40 7.55 -2.39 -0.02 2.38 16 39 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 1.80 6.37 -2.39 -0.02 1.78 16 Total: -1.00 -54.90 372.57 6.38 -48.52 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.93 Total: 14.58 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.81 Total: -9.19 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.41 Total: -80.70 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.07 Total: -25.37 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Atomic # 16 Polarization: 13.34 SS G_CDS: -0.89 Total: 12.45 kcal Total: -54.90 6.38 -48.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078350162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.381 kcal (2) G-P(sol) polarization free energy of solvation -54.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds