Wall clock time and date at job start Tue Mar 31 2020 12:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38430 * 122.53885 * 2 1 4 4 C 1.33391 * 114.91722 * 180.27049 * 3 2 1 5 5 S 1.75877 * 109.59693 * 359.76706 * 4 3 2 6 6 C 1.33393 * 122.53977 * 179.82207 * 2 1 3 7 7 C 1.50698 * 125.20484 * 0.02562 * 6 2 1 8 8 H 1.08998 * 115.55831 * 334.02845 * 7 6 2 9 9 C 1.52992 * 117.50020 * 188.33842 * 7 6 2 10 10 C 1.52994 * 117.49700 * 119.71346 * 7 6 2 11 11 H 1.09002 * 117.51955 * 214.96820 * 10 7 6 12 12 C 1.50700 * 117.50287 * 0.02562 * 10 7 6 13 13 O 1.21282 * 119.99616 * 0.02562 * 12 10 7 14 14 N 1.34773 * 120.00209 * 180.02562 * 12 10 7 15 15 C 1.46964 * 120.59643 * 179.97438 * 14 12 10 16 16 C 1.53367 * 108.63864 * 235.25109 * 15 14 12 17 17 N 1.46965 * 108.63384 * 310.57535 * 16 15 14 18 18 C 1.36938 * 120.59182 * 235.20445 * 17 16 15 19 19 H 1.07998 * 120.00129 * 29.74601 * 18 17 16 20 20 C 1.38814 * 119.99667 * 209.74428 * 18 17 16 21 21 N 1.31623 * 120.00201 * 24.26673 * 20 18 17 22 22 Si 1.86800 * 119.99697 * 204.26864 * 20 18 17 23 23 H 1.48503 * 109.47005 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47344 * 299.99847 * 22 20 18 25 25 H 1.48496 * 109.47347 * 60.00260 * 22 20 18 26 26 C 1.46966 * 118.81477 * 55.47623 * 17 16 15 27 27 C 1.46965 * 120.59351 * 0.02562 * 14 12 10 28 28 H 1.08996 * 109.47747 * 270.17412 * 1 2 3 29 29 H 1.09003 * 109.47575 * 30.17496 * 1 2 3 30 30 H 1.09007 * 109.47056 * 150.17438 * 1 2 3 31 31 H 1.07992 * 122.53639 * 0.03660 * 3 2 1 32 32 H 1.07997 * 125.19636 * 179.75125 * 4 3 2 33 33 H 1.08997 * 117.49818 * 145.02174 * 9 7 6 34 34 H 1.09001 * 117.49733 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.60840 * 115.50056 * 15 14 12 36 36 H 1.09005 * 109.75056 * 355.08183 * 15 14 12 37 37 H 1.08996 * 109.61299 * 190.83223 * 16 15 14 38 38 H 1.09002 * 109.75173 * 70.40368 * 16 15 14 39 39 H 0.96993 * 119.99926 * 5.77532 * 21 20 18 40 40 H 1.09004 * 109.60544 * 64.26404 * 26 17 16 41 41 H 1.08998 * 109.61161 * 184.77765 * 26 17 16 42 42 H 1.09002 * 109.60974 * 244.49358 * 27 14 12 43 43 H 1.09000 * 109.61498 * 5.00448 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0048 6 6 2.2245 -1.1245 0.0035 7 6 1.6537 -2.5192 0.0073 8 1 0.6573 -2.6184 0.4378 9 6 2.6288 -3.6810 0.2078 10 6 2.0092 -3.4311 -1.1687 11 1 1.2469 -4.1306 -1.5119 12 6 2.9037 -2.8661 -2.2418 13 8 3.3135 -1.7281 -2.1526 14 7 3.2484 -3.6254 -3.3006 15 6 4.1195 -3.0875 -4.3549 16 6 3.4063 -3.2380 -5.7043 17 7 2.9172 -4.6186 -5.8255 18 6 3.2667 -5.3897 -6.9018 19 1 4.2139 -5.2303 -7.3955 20 6 2.4034 -6.3763 -7.3583 21 7 1.1128 -6.2849 -7.1164 22 14 3.0733 -7.8336 -8.3157 23 1 1.9555 -8.7379 -8.6872 24 1 3.7476 -7.3493 -9.5470 25 1 4.0493 -8.5720 -7.4747 26 6 2.0415 -5.1547 -4.7741 27 6 2.7588 -5.0058 -3.4221 28 1 -0.3634 0.0031 1.0276 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3633 -0.8916 -0.5112 31 1 1.7964 2.1463 0.0006 32 1 4.3077 1.7823 -0.0105 33 1 2.2738 -4.5446 0.7702 34 1 3.6831 -3.4365 0.3374 35 1 5.0574 -3.6425 -4.3730 36 1 4.3218 -2.0336 -4.1636 37 1 4.1051 -3.0251 -6.5132 38 1 2.5655 -2.5462 -5.7557 39 1 0.7538 -5.4892 -6.6935 40 1 1.1054 -4.5963 -4.7577 41 1 1.8388 -6.2079 -4.9686 42 1 3.5997 -5.6977 -3.3737 43 1 2.0597 -5.2187 -2.6134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124498451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:39 Heat of formation + Delta-G solvation = 46.650485 kcal Electronic energy + Delta-G solvation = -25192.413548 eV Core-core repulsion = 21751.699132 eV Total energy + Delta-G solvation = -3440.714416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41683 -39.50321 -38.56822 -37.12515 -35.78756 -33.24636 -31.92552 -31.63555 -28.96161 -28.29148 -26.03220 -25.13773 -24.24912 -23.97509 -22.49731 -21.82591 -20.25966 -19.84351 -18.99943 -18.03705 -17.71067 -16.75293 -16.43445 -16.20503 -16.04125 -15.70674 -15.43610 -15.37422 -15.09868 -14.91340 -14.63196 -14.23832 -13.89214 -13.72990 -13.60026 -13.15334 -12.97874 -12.92372 -12.78905 -12.58028 -12.42546 -12.31014 -12.25567 -12.17188 -11.88000 -11.71342 -11.46308 -11.38005 -11.32686 -10.71533 -10.53783 -9.90024 -9.12544 -8.92767 -8.64285 -8.24614 -5.47461 0.18171 0.96935 1.29289 1.56750 1.60997 1.67107 1.86591 1.88950 2.02229 2.64873 2.90031 3.18795 3.38836 3.43682 3.61417 3.80562 3.93732 4.09806 4.15713 4.17761 4.24837 4.30822 4.38998 4.53705 4.59171 4.63361 4.65456 4.69524 4.71019 4.80416 4.86090 4.88052 4.90671 4.99470 5.01554 5.16482 5.16636 5.30135 5.52601 5.65749 5.79487 5.81104 6.34543 6.49829 6.98161 7.22824 7.70789 8.15003 8.95904 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.003229 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.402699 B = 8669.252150 C = 8865.577076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.146 4.146 4 C -0.244 4.244 5 S 0.138 5.862 6 C -0.146 4.146 7 C -0.054 4.054 8 H 0.153 0.847 9 C -0.127 4.127 10 C -0.192 4.192 11 H 0.147 0.853 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.600 5.600 15 C 0.112 3.888 16 C 0.135 3.865 17 N -0.616 5.616 18 C -0.361 4.361 19 H 0.051 0.949 20 C -0.069 4.069 21 N -0.937 5.937 22 Si 1.116 2.884 23 H -0.291 1.291 24 H -0.280 1.280 25 H -0.276 1.276 26 C 0.143 3.857 27 C 0.103 3.897 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.006 0.994 39 H 0.253 0.747 40 H 0.006 0.994 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 7.704 19.104 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C -0.177 4.177 4 C -0.380 4.380 5 S 0.407 5.593 6 C -0.264 4.264 7 C -0.074 4.074 8 H 0.171 0.829 9 C -0.165 4.165 10 C -0.213 4.213 11 H 0.164 0.836 12 C 0.311 3.689 13 O -0.429 6.429 14 N -0.333 5.333 15 C -0.012 4.012 16 C 0.008 3.992 17 N -0.340 5.340 18 C -0.490 4.490 19 H 0.069 0.931 20 C -0.266 4.266 21 N -0.579 5.579 22 Si 0.941 3.059 23 H -0.217 1.217 24 H -0.206 1.206 25 H -0.202 1.202 26 C 0.017 3.983 27 C -0.021 4.021 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.189 0.811 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.024 0.976 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.704 6.039 18.415 19.568 hybrid contribution -0.855 2.590 -0.168 2.733 sum 1.849 8.629 18.247 20.269 Atomic orbital electron populations 1.20476 0.88759 1.02625 1.02741 1.18988 0.98342 0.91631 1.05465 1.20130 0.92994 0.99586 1.05032 1.25834 1.00399 0.99859 1.11913 1.83762 1.06485 1.00121 1.68891 1.23572 0.95936 0.97306 1.09568 1.20645 1.01138 0.85881 0.99749 0.82940 1.23267 0.98531 1.00429 0.94267 1.22461 1.03636 1.05633 0.89567 0.83592 1.20378 0.80489 0.85545 0.82471 1.90877 1.56567 1.18568 1.76845 1.48057 1.49261 1.14389 1.21555 1.21851 0.92709 0.99567 0.87066 1.21329 0.96122 0.85883 0.95823 1.44305 1.58310 1.09433 1.21993 1.20231 1.01260 1.17537 1.09967 0.93141 1.27239 0.93636 1.05454 1.00226 1.70924 1.12315 1.31158 1.43466 0.82834 0.74596 0.73273 0.75234 1.21723 1.20588 1.20173 1.21312 0.91196 0.98345 0.87470 1.22375 0.99351 0.81784 0.98582 0.89978 0.91537 0.91898 0.83516 0.81097 0.83434 0.89428 0.91743 0.89619 0.91679 0.97605 0.93719 0.97608 0.91685 0.91473 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.72 71.23 0.69 -0.98 16 2 C -0.13 -3.32 5.80 -20.92 -0.12 -3.44 16 3 C -0.15 -3.59 9.98 21.22 0.21 -3.38 16 4 C -0.24 -6.16 11.23 66.72 0.75 -5.41 16 5 S 0.14 3.77 18.90 -56.49 -1.07 2.70 16 6 C -0.15 -3.80 4.60 24.59 0.11 -3.69 16 7 C -0.05 -1.13 5.47 -11.55 -0.06 -1.19 16 8 H 0.15 2.35 7.55 -2.39 -0.02 2.34 16 9 C -0.13 -2.30 9.75 30.59 0.30 -2.00 16 10 C -0.19 -4.49 5.11 -11.54 -0.06 -4.55 16 11 H 0.15 2.94 6.59 -2.39 -0.02 2.93 16 12 C 0.52 16.79 7.45 87.66 0.65 17.45 16 13 O -0.55 -19.91 10.74 -3.04 -0.03 -19.94 16 14 N -0.60 -20.74 2.95 -817.24 -2.41 -23.14 16 15 C 0.11 4.15 6.59 86.41 0.57 4.72 16 16 C 0.13 5.84 6.67 86.41 0.58 6.41 16 17 N -0.62 -30.45 2.80 -697.43 -1.95 -32.40 16 18 C -0.36 -19.74 9.47 84.03 0.80 -18.95 16 19 H 0.05 2.78 7.94 -2.91 -0.02 2.75 16 20 C -0.07 -3.79 4.69 84.86 0.40 -3.39 16 21 N -0.94 -55.33 12.43 21.65 0.27 -55.06 16 22 Si 1.12 49.16 29.98 68.60 2.06 51.22 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.14 6.36 4.89 86.55 0.42 6.79 16 27 C 0.10 3.47 6.52 86.55 0.56 4.03 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.06 1.20 7.25 -2.38 -0.02 1.19 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.83 7.27 -2.39 -0.02 1.81 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 3.12 7.00 -2.38 -0.02 3.10 16 37 H 0.06 2.77 7.93 -2.39 -0.02 2.75 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.25 15.33 6.77 -92.71 -0.63 14.70 16 40 H 0.01 0.28 7.92 -2.39 -0.02 0.26 16 41 H 0.06 3.21 6.32 -2.39 -0.02 3.20 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.11 2.90 5.50 -2.39 -0.01 2.89 16 Total: -1.00 -68.80 350.05 3.82 -64.98 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.16 Total: 19.22 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 5.80 Total: -7.57 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.09 Total: -110.61 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.03 Total: -19.94 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.06 Total: 51.22 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.07 Total: 2.70 kcal Total: -68.80 3.82 -64.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124498451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.626 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds