Wall clock time and date at job start Tue Mar 31 2020 12:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47137 * 2 1 4 4 C 1.53001 * 109.47294 * 239.99807 * 2 1 3 5 5 C 1.50706 * 109.47041 * 119.99610 * 2 1 3 6 6 C 1.33813 * 124.51906 * 60.00274 * 5 2 1 7 7 C 1.37481 * 115.09888 * 179.97438 * 6 5 2 8 8 C 1.36646 * 113.29615 * 359.97438 * 7 6 5 9 9 C 1.46582 * 125.46067 * 179.97438 * 8 7 6 10 10 O 1.21706 * 119.99450 * 6.74135 * 9 8 7 11 11 N 1.34768 * 120.00409 * 186.74506 * 9 8 7 12 12 C 1.46507 * 119.99739 * 5.55048 * 11 9 8 13 13 C 1.50698 * 109.47009 * 275.65671 * 12 11 9 14 14 H 1.08000 * 120.00173 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99926 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99608 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00259 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47051 * 119.99638 * 17 15 13 20 20 H 1.48495 * 109.47160 * 239.99748 * 17 15 13 21 21 C 1.46501 * 120.00034 * 185.55798 * 11 9 8 22 22 C 1.53001 * 109.46625 * 272.26125 * 21 11 9 23 23 C 1.47208 * 109.47027 * 180.02562 * 22 21 11 24 24 N 9.34642 * 142.31769 * 137.12112 * 5 1 2 25 25 S 1.70616 * 124.52425 * 240.26971 * 5 2 1 26 26 H 1.08998 * 109.46877 * 300.00369 * 1 2 3 27 27 H 1.08997 * 109.46922 * 60.00239 * 1 2 3 28 28 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46857 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46759 * 300.00037 * 3 2 1 31 31 H 1.08998 * 109.46883 * 59.99664 * 3 2 1 32 32 H 1.09006 * 109.46734 * 299.99972 * 4 2 1 33 33 H 1.09004 * 109.47029 * 59.99701 * 4 2 1 34 34 H 1.09001 * 109.47329 * 180.02562 * 4 2 1 35 35 H 1.08003 * 122.45233 * 359.97438 * 6 5 2 36 36 H 1.07994 * 123.35149 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47045 * 35.66226 * 12 11 9 38 38 H 1.09001 * 109.46518 * 155.65668 * 12 11 9 39 39 H 0.97005 * 120.00067 * 180.02562 * 16 15 13 40 40 H 1.08992 * 109.47337 * 32.26292 * 21 11 9 41 41 H 1.08999 * 109.46824 * 152.26779 * 21 11 9 42 42 H 1.09004 * 109.47444 * 299.99764 * 22 21 11 43 43 H 1.09004 * 109.47537 * 60.00298 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2306 6 6 1.7654 -1.9866 1.5315 7 6 2.3240 -2.4385 2.7036 8 6 3.0594 -1.4877 3.3536 9 6 3.7681 -1.6809 4.6221 10 8 3.8321 -2.7893 5.1206 11 7 4.3487 -0.6312 5.2363 12 6 4.1693 0.7211 4.7019 13 6 5.1788 0.9680 3.6107 14 1 5.8833 0.1948 3.3417 15 6 5.2031 2.1810 2.9556 16 7 4.3456 3.1226 3.2835 17 14 6.4540 2.4868 1.6024 18 1 7.2987 1.2781 1.4267 19 1 5.7457 2.7852 0.3317 20 1 7.3123 3.6404 1.9732 21 6 5.1593 -0.8424 6.4382 22 6 4.2583 -0.8033 7.6742 23 6 5.0729 -1.0148 8.8820 24 7 5.6957 -1.1778 9.8164 25 16 3.0119 0.0072 2.4291 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2490 35 1 1.1557 -2.6157 0.8998 36 1 2.1952 -3.4450 3.0734 37 1 3.1629 0.8205 4.2953 38 1 4.3120 1.4491 5.5005 39 1 4.3624 3.9759 2.8224 40 1 5.6520 -1.8127 6.3783 41 1 5.9113 -0.0568 6.5118 42 1 3.7656 0.1672 7.7342 43 1 3.5062 -1.5888 7.6007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150763461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:16 Heat of formation + Delta-G solvation = 4.555575 kcal Electronic energy + Delta-G solvation = -25118.510391 eV Core-core repulsion = 21675.970603 eV Total energy + Delta-G solvation = -3442.539789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.28262 -38.07244 -36.68846 -35.50827 -35.00701 -33.23531 -31.40999 -28.28661 -27.54712 -27.10721 -27.06477 -24.89088 -23.56054 -22.90378 -19.96513 -19.75778 -17.57122 -17.37541 -17.12579 -16.73262 -15.62910 -15.24932 -14.77861 -14.57306 -14.39022 -14.30204 -14.01916 -13.65134 -13.41748 -13.11696 -12.65984 -12.57037 -12.48824 -12.36838 -12.28069 -12.12199 -12.05190 -11.78629 -11.54043 -11.41337 -11.29003 -11.13954 -11.02186 -10.78079 -10.71496 -10.66098 -10.57407 -10.34688 -10.03539 -9.34230 -9.18404 -8.79296 -8.14766 -7.75879 -7.49736 -6.50780 -4.50610 1.38888 2.61564 2.84853 2.94569 2.99589 3.12401 3.13328 3.16243 3.20717 3.64891 3.95378 4.10400 4.37627 4.85445 4.94161 5.13826 5.18254 5.22903 5.31666 5.53519 5.61045 5.65918 5.77188 5.80702 5.96012 6.02178 6.04584 6.07383 6.09065 6.15840 6.20265 6.25072 6.37744 6.38966 6.51968 6.55524 6.75135 6.83559 6.99869 7.19406 7.25457 7.45260 7.63055 7.69671 8.05353 8.48836 8.84020 9.06522 10.52385 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.005387 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.712984 B = 5196.167707 C = 6821.936693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.006 3.994 3 C -0.152 4.152 4 C -0.134 4.134 5 C -0.286 4.286 6 C -0.171 4.171 7 C -0.077 4.077 8 C -0.310 4.310 9 C 0.593 3.407 10 O -0.564 6.564 11 N -0.600 5.600 12 C 0.220 3.780 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.080 3.920 16 N -0.867 5.867 17 Si 0.884 3.116 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.131 3.869 22 C -0.047 4.047 23 C 0.222 3.778 24 N -0.451 5.451 25 S 0.413 5.587 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.272 0.728 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -1.404 -5.421 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 C -0.209 4.209 4 C -0.192 4.192 5 C -0.406 4.406 6 C -0.202 4.202 7 C -0.112 4.112 8 C -0.432 4.432 9 C 0.384 3.616 10 O -0.446 6.446 11 N -0.330 5.330 12 C 0.098 3.902 13 C -0.578 4.578 14 H 0.091 0.909 15 C -0.128 4.128 16 N -0.503 5.503 17 Si 0.710 3.290 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.204 1.204 21 C 0.006 3.994 22 C -0.089 4.089 23 C -0.096 4.096 24 N -0.128 5.128 25 S 0.695 5.305 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.695 -0.569 -3.661 5.981 hybrid contribution -0.231 -1.148 -1.447 1.861 sum -4.927 -1.717 -5.108 7.301 Atomic orbital electron populations 1.21836 0.94063 1.01666 1.01452 1.18949 0.95066 0.94312 0.91202 1.21980 1.01857 0.94909 1.02190 1.21862 1.01324 0.99996 0.96058 1.25955 1.06719 1.01476 1.06407 1.19460 1.06339 0.95621 0.98763 1.20320 0.97192 0.99231 0.94448 1.24675 1.12834 1.02587 1.03064 1.17107 0.77879 0.83784 0.82866 1.90711 1.62384 1.24655 1.66896 1.47983 1.49537 1.09199 1.26258 1.19772 0.97351 0.77618 0.95460 1.21572 1.17392 1.00298 1.18493 0.90915 1.24906 0.95560 0.95303 0.96986 1.69908 1.34567 1.05244 1.40557 0.86606 0.81652 0.79032 0.81697 1.19056 1.20030 1.20359 1.21111 0.92490 1.03659 0.82128 1.19814 0.97170 1.05605 0.86288 1.29064 0.93680 0.92580 0.94284 1.81123 1.10005 1.09733 1.11953 1.86427 1.33951 1.04408 1.05675 0.92483 0.92822 0.92702 0.92001 0.92403 0.91586 0.92672 0.92824 0.92564 0.86791 0.85167 0.93490 0.92824 0.91820 0.90015 0.89175 0.87056 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.33 37.16 0.31 -1.32 16 2 C 0.01 0.09 0.90 -155.65 -0.14 -0.05 16 3 C -0.15 -2.23 7.52 37.16 0.28 -1.95 16 4 C -0.13 -1.72 8.33 37.16 0.31 -1.41 16 5 C -0.29 -4.79 4.97 -35.86 -0.18 -4.97 16 6 C -0.17 -2.84 9.18 -41.41 -0.38 -3.22 16 7 C -0.08 -1.39 10.02 -40.43 -0.41 -1.80 16 8 C -0.31 -6.09 6.19 -36.79 -0.23 -6.32 16 9 C 0.59 11.97 7.57 -12.90 -0.10 11.87 16 10 O -0.56 -12.22 16.53 5.18 0.09 -12.13 16 11 N -0.60 -11.06 2.47 -176.64 -0.44 -11.50 16 12 C 0.22 4.39 4.72 -5.19 -0.02 4.36 16 13 C -0.53 -11.63 6.50 -34.44 -0.22 -11.85 16 14 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.08 1.78 4.81 -17.82 -0.09 1.69 16 16 N -0.87 -19.68 13.29 55.43 0.74 -18.94 16 17 Si 0.88 17.97 29.54 -169.99 -5.02 12.95 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.13 2.02 5.27 -4.04 -0.02 2.00 16 22 C -0.05 -0.60 6.02 -29.51 -0.18 -0.78 16 23 C 0.22 3.14 15.43 -20.80 -0.32 2.82 16 24 N -0.45 -7.41 18.53 42.10 0.78 -6.63 16 25 S 0.41 7.83 13.71 -107.50 -1.47 6.35 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.65 7.86 -51.93 -0.41 0.24 16 29 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.05 0.67 7.86 -51.93 -0.41 0.26 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.11 1.67 7.90 -52.48 -0.41 1.25 16 36 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.05 0.98 5.02 -26.47 -0.13 0.85 16 38 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 39 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 40 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 41 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 42 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -25.24 370.40 -7.47 -32.71 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.34 Total: 2.54 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.38 Total: -10.94 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 1.08 Total: -37.08 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.95 kcal Atomic # 16 Polarization: 7.83 SS G_CDS: -1.47 Total: 6.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -25.24 -7.47 -32.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150763461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.269 kcal (2) G-P(sol) polarization free energy of solvation -25.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds