Wall clock time and date at job start Tue Mar 31 2020 12:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46947 * 2 1 4 4 C 1.53000 * 109.47244 * 240.00324 * 2 1 3 5 5 C 1.50699 * 109.47383 * 59.99507 * 4 2 1 6 6 H 1.08003 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00381 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99643 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00470 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47417 * 119.99647 * 9 7 5 12 12 H 1.48499 * 109.47432 * 240.00269 * 9 7 5 13 13 C 1.52994 * 109.47215 * 119.99922 * 2 1 3 14 14 N 1.46904 * 109.47244 * 299.99929 * 13 2 1 15 15 C 1.46898 * 110.99785 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.47010 * 180.02562 * 15 14 13 17 17 C 1.34471 * 126.05429 * 94.71220 * 16 15 14 18 18 O 1.34898 * 107.33769 * 180.26376 * 17 16 15 19 19 C 1.34542 * 107.67610 * 0.02562 * 18 17 16 20 20 C 1.47018 * 125.76032 * 180.02562 * 19 18 17 21 21 C 1.36175 * 125.33353 * 359.97438 * 20 19 18 22 22 C 1.37728 * 114.44248 * 179.97438 * 21 20 19 23 23 C 1.33715 * 115.19467 * 359.97438 * 22 21 20 24 24 S 1.75828 * 109.95902 * 359.76956 * 23 22 21 25 25 N 1.31518 * 108.47954 * 359.97438 * 19 18 17 26 26 H 1.09004 * 109.47458 * 299.99923 * 1 2 3 27 27 H 1.09000 * 109.47310 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.47136 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47502 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47563 * 300.00122 * 3 2 1 31 31 H 1.09002 * 109.47641 * 60.00115 * 3 2 1 32 32 H 1.08995 * 109.47288 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46938 * 299.99979 * 4 2 1 34 34 H 0.97004 * 119.99624 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47142 * 179.97438 * 13 2 1 36 36 H 1.08997 * 109.47540 * 60.00216 * 13 2 1 37 37 H 1.00894 * 110.99497 * 56.05104 * 14 13 2 38 38 H 1.09001 * 109.47293 * 60.00173 * 15 14 13 39 39 H 1.09003 * 109.47298 * 300.00359 * 15 14 13 40 40 H 1.08002 * 126.33319 * 0.23457 * 17 16 15 41 41 H 1.08001 * 122.77940 * 359.97438 * 21 20 19 42 42 H 1.08001 * 122.40216 * 179.97438 * 22 21 20 43 43 H 1.07999 * 125.01800 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8527 9 14 1.2481 0.3988 -5.2572 10 1 0.4244 1.5665 -4.8530 11 1 2.4034 0.8648 -6.0656 12 1 0.4224 -0.5340 -6.0654 13 6 2.0399 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6702 16 6 1.4993 0.0414 4.8771 17 6 0.3820 -0.2557 5.5639 18 8 0.2725 0.6447 6.5624 19 6 1.3223 1.4815 6.4748 20 6 1.5947 2.6149 7.3708 21 6 0.8204 2.9875 8.4272 22 6 1.2868 4.0847 9.1167 23 6 2.4219 4.6122 8.6464 24 16 2.9764 3.6968 7.2514 25 7 2.0644 1.1139 5.4531 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1299 -0.7208 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 2.8599 -1.8833 -4.7337 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2493 37 1 0.5438 0.0413 2.4402 38 1 3.1107 -0.6954 3.6872 39 1 1.6571 -1.7226 3.6868 40 1 -0.3016 -1.0652 5.3545 41 1 -0.0846 2.4658 8.7015 42 1 0.7727 4.4899 9.9757 43 1 2.9256 5.4715 9.0639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174307618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:35 Heat of formation + Delta-G solvation = 46.909740 kcal Electronic energy + Delta-G solvation = -23405.146206 eV Core-core repulsion = 19964.443032 eV Total energy + Delta-G solvation = -3440.703174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.42147 -38.06883 -37.73354 -35.57206 -33.97560 -32.34033 -31.57506 -29.01451 -27.10871 -26.34225 -26.22995 -25.01187 -24.32916 -22.31215 -22.21255 -21.46393 -19.34139 -18.44256 -17.86031 -16.86054 -16.84062 -16.21916 -15.94180 -15.52921 -14.78614 -14.52529 -14.17005 -14.06096 -13.91758 -13.48446 -13.20988 -13.04896 -12.73292 -12.64101 -12.56833 -12.02670 -11.89696 -11.67985 -11.36259 -11.16460 -10.97083 -10.86608 -10.73514 -10.68175 -10.47462 -10.26035 -10.10402 -9.95213 -9.66436 -9.01079 -8.89091 -8.81172 -8.43871 -8.30255 -8.09955 -5.94701 -3.94482 0.06237 0.97156 1.43018 1.58217 2.17299 2.61367 2.73672 3.33719 3.41563 3.45302 3.59614 4.42019 4.51930 4.62243 4.69541 4.78911 4.92503 5.09871 5.27485 5.41215 5.44535 5.46324 5.61536 5.67037 5.74586 5.78020 5.88502 5.94278 6.00190 6.05802 6.24261 6.34775 6.52337 6.70256 6.80782 6.86364 7.20908 7.23031 7.29615 7.38245 7.49826 7.64416 7.72694 7.87561 8.05869 8.50447 9.11062 9.68235 11.16989 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.002159 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.607705 B =12965.610692 C =13495.166031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.071 3.929 14 N -0.679 5.679 15 C 0.136 3.864 16 C 0.010 3.990 17 C -0.068 4.068 18 O -0.193 6.193 19 C 0.252 3.748 20 C -0.133 4.133 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.219 4.219 24 S 0.218 5.782 25 N -0.447 5.447 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.338 0.662 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.218 0.782 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 7.254 27.852 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.312 5.312 15 C 0.006 3.994 16 C -0.112 4.112 17 C -0.140 4.140 18 O -0.080 6.080 19 C 0.047 3.953 20 C -0.252 4.252 21 C -0.135 4.135 22 C -0.169 4.169 23 C -0.356 4.356 24 S 0.484 5.516 25 N -0.177 5.177 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.157 0.843 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.235 0.765 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.906 8.033 26.577 27.779 hybrid contribution -2.781 -1.008 0.156 2.962 sum -3.688 7.025 26.733 27.886 Atomic orbital electron populations 1.21776 0.96143 1.00319 1.00433 1.20623 0.94679 0.96203 0.94288 1.21598 0.99851 0.95740 1.00157 1.19132 0.96178 0.94958 0.90149 1.21275 1.30652 1.11817 0.90588 0.92247 1.25024 0.95460 0.95148 0.99079 1.69981 1.37406 1.23224 1.23146 0.86604 0.78601 0.79714 0.83487 1.19788 1.21158 1.21224 1.22143 1.00046 0.94605 0.88960 1.60519 1.16314 1.53812 1.00507 1.20195 1.01279 0.92846 0.85042 1.21741 0.94402 0.95378 0.99682 1.24967 1.01829 0.96861 0.90369 1.84533 1.43134 1.34620 1.45701 1.22365 0.84614 0.93088 0.95216 1.21466 1.03554 0.99578 1.00600 1.20653 1.00869 0.97798 0.94209 1.19964 0.97205 0.97189 1.02509 1.26131 1.01793 1.05823 1.01888 1.84650 1.20645 1.19920 1.26369 1.70757 1.28725 1.12211 1.06000 0.94903 0.91670 0.94073 0.94107 0.92727 0.93902 0.96606 0.96886 0.93249 0.91273 0.95659 0.84280 0.89209 0.93566 0.76512 0.83528 0.83611 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.15 0.29 -2.12 16 2 C -0.06 -1.15 0.60 -154.52 -0.09 -1.25 16 3 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.50 -13.88 7.65 -34.44 -0.26 -14.14 16 6 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.22 4.65 -3.83 -0.02 1.20 16 14 N -0.68 -10.18 5.70 -115.05 -0.66 -10.83 16 15 C 0.14 1.74 6.22 -4.97 -0.03 1.71 16 16 C 0.01 0.13 6.61 -82.88 -0.55 -0.42 16 17 C -0.07 -0.72 12.08 29.40 0.36 -0.37 16 18 O -0.19 -2.30 10.79 3.40 0.04 -2.27 16 19 C 0.25 3.27 8.08 -14.13 -0.11 3.15 16 20 C -0.13 -1.45 6.46 -36.77 -0.24 -1.68 16 21 C -0.10 -0.85 10.15 -40.51 -0.41 -1.26 16 22 C -0.14 -0.92 10.15 -41.35 -0.42 -1.34 16 23 C -0.22 -1.44 11.21 29.15 0.33 -1.11 16 24 S 0.22 2.02 23.30 -107.50 -2.50 -0.49 16 25 N -0.45 -6.54 11.33 -8.13 -0.09 -6.63 16 26 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 27 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 31 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.34 4.83 6.76 -39.29 -0.27 4.56 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -32.12 370.10 -9.19 -41.31 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.20 Total: 0.33 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.07 Total: -17.52 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.01 Total: -43.66 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.50 Total: -0.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.12 -9.19 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174307618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.219 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds