Wall clock time and date at job start Tue Mar 31 2020 12:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46947 * 2 1 4 4 C 1.53000 * 109.47244 * 240.00324 * 2 1 3 5 5 C 1.50699 * 109.47383 * 59.99507 * 4 2 1 6 6 H 1.08003 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00381 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99643 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00470 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47417 * 119.99647 * 9 7 5 12 12 H 1.48499 * 109.47432 * 240.00269 * 9 7 5 13 13 C 1.52994 * 109.47215 * 119.99922 * 2 1 3 14 14 N 1.46904 * 109.47244 * 299.99929 * 13 2 1 15 15 C 1.46898 * 110.99785 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.47010 * 180.02562 * 15 14 13 17 17 C 1.34471 * 126.05429 * 94.71220 * 16 15 14 18 18 O 1.34898 * 107.33769 * 180.26376 * 17 16 15 19 19 C 1.34542 * 107.67610 * 0.02562 * 18 17 16 20 20 C 1.47018 * 125.76032 * 180.02562 * 19 18 17 21 21 C 1.36175 * 125.33353 * 359.97438 * 20 19 18 22 22 C 1.37728 * 114.44248 * 179.97438 * 21 20 19 23 23 C 1.33715 * 115.19467 * 359.97438 * 22 21 20 24 24 S 1.75828 * 109.95902 * 359.76956 * 23 22 21 25 25 N 1.31518 * 108.47954 * 359.97438 * 19 18 17 26 26 H 1.09004 * 109.47458 * 299.99923 * 1 2 3 27 27 H 1.09000 * 109.47310 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.47136 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47502 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47563 * 300.00122 * 3 2 1 31 31 H 1.09002 * 109.47641 * 60.00115 * 3 2 1 32 32 H 1.08995 * 109.47288 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46938 * 299.99979 * 4 2 1 34 34 H 0.97004 * 119.99624 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47142 * 179.97438 * 13 2 1 36 36 H 1.08997 * 109.47540 * 60.00216 * 13 2 1 37 37 H 1.00894 * 110.99497 * 56.05104 * 14 13 2 38 38 H 1.09001 * 109.47293 * 60.00173 * 15 14 13 39 39 H 1.09003 * 109.47298 * 300.00359 * 15 14 13 40 40 H 1.08002 * 126.33319 * 0.23457 * 17 16 15 41 41 H 1.08001 * 122.77940 * 359.97438 * 21 20 19 42 42 H 1.08001 * 122.40216 * 179.97438 * 22 21 20 43 43 H 1.07999 * 125.01800 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6256 -1.5519 -3.8527 9 14 1.2481 0.3988 -5.2572 10 1 0.4244 1.5665 -4.8530 11 1 2.4034 0.8648 -6.0656 12 1 0.4224 -0.5340 -6.0654 13 6 2.0399 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6702 16 6 1.4993 0.0414 4.8771 17 6 0.3820 -0.2557 5.5639 18 8 0.2725 0.6447 6.5624 19 6 1.3223 1.4815 6.4748 20 6 1.5947 2.6149 7.3708 21 6 0.8204 2.9875 8.4272 22 6 1.2868 4.0847 9.1167 23 6 2.4219 4.6122 8.6464 24 16 2.9764 3.6968 7.2514 25 7 2.0644 1.1139 5.4531 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1299 -0.7208 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 2.8599 -1.8833 -4.7337 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2493 37 1 0.5438 0.0413 2.4402 38 1 3.1107 -0.6954 3.6872 39 1 1.6571 -1.7226 3.6868 40 1 -0.3016 -1.0652 5.3545 41 1 -0.0846 2.4658 8.7015 42 1 0.7727 4.4899 9.9757 43 1 2.9256 5.4715 9.0639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174307618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:34 Heat of formation + Delta-G solvation = 25.413913 kcal Electronic energy + Delta-G solvation = -23406.078335 eV Core-core repulsion = 19964.443032 eV Total energy + Delta-G solvation = -3441.635303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.29666 -39.25863 -38.63855 -36.72711 -35.27940 -34.16888 -32.53681 -29.93705 -28.94254 -27.90459 -27.52081 -25.89914 -25.65741 -23.94070 -23.11085 -22.36378 -20.07663 -19.51669 -19.07281 -18.33047 -17.75349 -17.68783 -16.73903 -16.56876 -16.56395 -15.70171 -15.60571 -15.12174 -14.90983 -14.59082 -14.32595 -14.12228 -14.07391 -13.86798 -13.64322 -13.37060 -13.19425 -13.01654 -12.80424 -12.68654 -12.42870 -12.34238 -12.25687 -12.13162 -11.87801 -11.78343 -11.59200 -11.38608 -10.88760 -10.80190 -10.63807 -10.50433 -9.55073 -9.34179 -9.14495 -8.13673 -6.20179 -0.61601 0.31052 0.64977 1.00011 1.39894 1.41176 1.45729 1.53244 1.82752 1.95054 2.43984 2.79869 3.20225 3.35176 3.78619 3.87500 4.14050 4.16752 4.20613 4.30995 4.37750 4.47176 4.55712 4.59651 4.74753 4.76529 4.80933 4.84077 4.95556 5.01902 5.07044 5.12815 5.20488 5.21002 5.27602 5.41311 5.51627 5.54088 5.57836 5.64360 5.87193 5.93205 6.03033 6.37464 6.47451 6.63848 6.94866 7.46838 8.98734 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.002159 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.607705 B =12965.610692 C =13495.166031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.106 4.106 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.064 0.936 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.084 3.916 14 N -0.683 5.683 15 C 0.142 3.858 16 C -0.019 4.019 17 C -0.049 4.049 18 O -0.196 6.196 19 C 0.246 3.754 20 C -0.173 4.173 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.194 4.194 24 S 0.172 5.828 25 N -0.486 5.486 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.059 0.941 32 H -0.016 1.016 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.345 0.655 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.259 0.741 41 H 0.160 0.840 42 H 0.179 0.821 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 8.507 29.915 31.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.082 0.918 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.045 4.045 14 N -0.316 5.316 15 C 0.013 3.987 16 C -0.140 4.140 17 C -0.121 4.121 18 O -0.083 6.083 19 C 0.041 3.959 20 C -0.291 4.291 21 C -0.121 4.121 22 C -0.173 4.173 23 C -0.331 4.331 24 S 0.437 5.563 25 N -0.216 5.216 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.002 0.998 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.165 0.835 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.275 0.725 41 H 0.178 0.822 42 H 0.196 0.804 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.891 9.291 28.652 30.259 hybrid contribution -2.159 -1.354 -0.345 2.572 sum -5.050 7.937 28.306 29.828 Atomic orbital electron populations 1.21677 0.94524 1.00708 1.00993 1.20482 0.95925 0.95739 0.93311 1.21492 0.99034 0.95709 1.00132 1.19007 0.94083 0.94179 0.92493 1.21637 1.30126 1.11783 0.91483 0.91769 1.25918 0.95794 0.95962 1.02556 1.70115 1.38888 1.24885 1.23937 0.85525 0.78096 0.78791 0.79414 1.18617 1.20938 1.20682 1.21822 0.99212 0.94614 0.88808 1.60392 1.16768 1.54084 1.00396 1.20133 1.00517 0.94003 0.84072 1.21786 0.95784 0.95984 1.00478 1.25661 1.01162 0.96506 0.88749 1.84549 1.42897 1.34769 1.46080 1.22728 0.84488 0.93498 0.95140 1.21616 1.05032 1.00349 1.02072 1.21007 1.00500 0.97669 0.92897 1.20314 0.97261 0.96505 1.03197 1.26514 1.01326 1.05557 0.99722 1.84768 1.21519 1.21150 1.28844 1.70706 1.30101 1.13528 1.07315 0.91808 0.93551 0.93777 0.95280 0.94259 0.92169 0.99781 0.99247 0.93183 0.92555 0.95125 0.83510 0.90642 0.90961 0.72546 0.82236 0.80365 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 2 C -0.05 -2.18 0.60 -52.19 -0.03 -2.21 16 3 C -0.11 -4.28 8.06 71.98 0.58 -3.70 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.60 7.65 25.60 0.20 -28.40 16 6 H 0.06 3.47 5.68 -2.91 -0.02 3.45 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.08 2.88 4.65 86.30 0.40 3.28 16 14 N -0.68 -19.69 5.70 -517.92 -2.95 -22.65 16 15 C 0.14 3.50 6.22 85.56 0.53 4.03 16 16 C -0.02 -0.48 6.61 41.33 0.27 -0.20 16 17 C -0.05 -0.94 12.08 66.96 0.81 -0.13 16 18 O -0.20 -4.41 10.79 -10.76 -0.12 -4.52 16 19 C 0.25 6.33 8.08 87.04 0.70 7.03 16 20 C -0.17 -3.66 6.46 24.09 0.16 -3.51 16 21 C -0.09 -1.28 10.15 21.67 0.22 -1.06 16 22 C -0.14 -1.48 10.15 21.12 0.21 -1.26 16 23 C -0.19 -2.07 11.21 66.79 0.75 -1.32 16 24 S 0.17 3.15 23.30 -56.49 -1.32 1.83 16 25 N -0.49 -14.35 11.33 -293.48 -3.33 -17.67 16 26 H 0.06 1.90 6.57 -2.38 -0.02 1.88 16 27 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 31 H 0.06 2.20 7.60 -2.39 -0.02 2.18 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.34 9.07 6.76 -89.70 -0.61 8.47 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.26 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 43 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -71.91 370.10 0.97 -70.94 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.41 Total: 11.29 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 5.95 Total: -28.94 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -5.99 Total: -97.56 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.12 Total: -4.52 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Total: -71.91 0.97 -70.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174307618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.357 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds