Wall clock time and date at job start Tue Mar 31 2020 12:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46920 * 2 1 4 4 C 1.50703 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.29026 * 124.91716 * 90.00042 * 4 3 2 6 6 C 1.31779 * 117.12312 * 180.02562 * 5 4 3 7 7 C 1.50708 * 122.74574 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47302 * 275.02317 * 7 6 5 9 9 C 1.46898 * 111.00453 * 287.98856 * 8 7 6 10 10 C 1.50700 * 109.46728 * 299.47088 * 9 8 7 11 11 H 1.08003 * 120.00455 * 4.75865 * 10 9 8 12 12 C 1.37884 * 119.99936 * 184.76924 * 10 9 8 13 13 N 1.31509 * 119.99626 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99785 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47411 * 90.00024 * 14 12 10 16 16 H 1.48505 * 109.46939 * 209.99672 * 14 12 10 17 17 H 1.48498 * 109.47216 * 329.99473 * 14 12 10 18 18 C 1.46903 * 111.00118 * 164.03000 * 8 7 6 19 19 C 1.50701 * 109.47218 * 190.00235 * 18 8 7 20 20 C 1.34508 * 125.78863 * 90.00165 * 19 18 8 21 21 C 1.41378 * 106.84213 * 180.02562 * 20 19 18 22 22 C 1.34515 * 106.83960 * 359.97438 * 21 20 19 23 23 O 1.34297 * 108.41889 * 0.02562 * 22 21 20 24 24 C 1.33633 * 114.50485 * 0.23270 * 6 5 4 25 25 S 1.70972 * 124.91641 * 270.00388 * 4 3 2 26 26 H 1.09002 * 109.47651 * 59.99700 * 1 2 3 27 27 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47145 * 300.00163 * 1 2 3 29 29 H 1.08999 * 109.46831 * 240.00429 * 2 1 3 30 30 H 1.08994 * 109.47381 * 120.00330 * 2 1 3 31 31 H 1.08999 * 109.47018 * 60.00544 * 3 2 1 32 32 H 1.08999 * 109.47582 * 299.99923 * 3 2 1 33 33 H 1.09001 * 109.47008 * 155.02563 * 7 6 5 34 34 H 1.09001 * 109.46932 * 35.02728 * 7 6 5 35 35 H 1.08996 * 109.47120 * 59.46509 * 9 8 7 36 36 H 1.08999 * 109.47612 * 179.46705 * 9 8 7 37 37 H 0.97003 * 119.99770 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46755 * 70.00078 * 18 8 7 39 39 H 1.09002 * 109.46914 * 310.00541 * 18 8 7 40 40 H 1.08003 * 126.58140 * 0.05584 * 20 19 18 41 41 H 1.08001 * 126.58046 * 180.02562 * 21 20 19 42 42 H 1.08004 * 125.78845 * 180.26005 * 22 21 20 43 43 H 1.08001 * 126.04298 * 179.76735 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2851 1.4428 -1.0589 6 6 5.5907 1.4423 -0.8808 7 6 6.5698 1.4418 -2.0265 8 7 6.7952 0.0621 -2.4775 9 6 7.5949 -0.6875 -1.4995 10 6 8.9357 -0.0206 -1.3303 11 1 9.1422 0.9123 -1.8337 12 6 9.8990 -0.6017 -0.5331 13 7 9.6474 -1.7376 0.0800 14 14 11.5612 0.2245 -0.3239 15 1 11.5119 1.1488 0.8373 16 1 12.6017 -0.8089 -0.0902 17 1 11.8914 0.9904 -1.5526 18 6 7.4273 0.0383 -3.8034 19 6 7.4195 -1.3706 -4.3384 20 6 6.4457 -1.9238 -5.0832 21 6 6.8465 -3.2507 -5.3615 22 6 8.0417 -3.4288 -4.7705 23 8 8.3837 -2.2867 -4.1521 24 6 5.9755 1.4367 0.3989 25 16 4.5262 1.4423 1.4009 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.5142 1.8754 -1.6975 34 1 6.1663 2.0318 -2.8494 35 1 7.0746 -0.7053 -0.5420 36 1 7.7389 -1.7082 -1.8538 37 1 10.3249 -2.1463 0.6412 38 1 8.4556 0.3904 -3.7220 39 1 6.8735 0.6876 -4.4816 40 1 5.5329 -1.4459 -5.4070 41 1 6.2987 -3.9809 -5.9386 42 1 8.6286 -4.3351 -4.7929 43 1 6.9948 1.4318 0.7560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176294988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:10 Heat of formation + Delta-G solvation = 55.240259 kcal Electronic energy + Delta-G solvation = -24606.002187 eV Core-core repulsion = 21165.660251 eV Total energy + Delta-G solvation = -3440.341936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88524 -39.54186 -36.76206 -35.04837 -32.60723 -32.27986 -31.09271 -29.55833 -27.51074 -27.31338 -25.94233 -24.17604 -23.00905 -21.54412 -21.07044 -20.58863 -19.50587 -19.25027 -17.26250 -16.75024 -16.24196 -15.65296 -15.15722 -14.95949 -14.87475 -14.61628 -14.11352 -13.90433 -13.82256 -13.36221 -13.03933 -12.73248 -12.47454 -12.19328 -12.15167 -12.00429 -11.95677 -11.61477 -11.37704 -11.29541 -11.06214 -10.99950 -10.89755 -10.74193 -10.55251 -10.32969 -10.05631 -9.68261 -9.30193 -9.20565 -8.92813 -8.44525 -8.29546 -7.86969 -7.25645 -6.04582 -4.13920 1.17759 1.79013 2.16650 2.37819 3.14219 3.23812 3.31829 3.32116 3.34003 3.70796 4.35386 4.37469 4.93439 4.98203 5.08111 5.19499 5.26492 5.37139 5.47733 5.53373 5.58093 5.59586 5.68079 5.71328 5.85333 5.90412 5.98557 6.01226 6.10249 6.19166 6.25361 6.28275 6.35281 6.40936 6.52511 6.70941 6.72518 7.08746 7.20150 7.51486 7.81889 7.88512 7.96141 8.15296 8.23227 8.27202 8.94849 9.52337 11.00677 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.004756 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.372676 B = 5885.975222 C = 7920.971606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.036 4.036 4 C 0.037 3.963 5 N -0.452 5.452 6 C 0.088 3.912 7 C 0.132 3.868 8 N -0.531 5.531 9 C 0.185 3.815 10 C -0.550 4.550 11 H 0.057 0.943 12 C 0.071 3.929 13 N -0.885 5.885 14 Si 0.884 3.116 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.136 3.864 19 C 0.030 3.970 20 C -0.217 4.217 21 C -0.223 4.223 22 C -0.051 4.051 23 O -0.156 6.156 24 C -0.222 4.222 25 S 0.079 5.921 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.192 0.808 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 4.061 -2.329 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.077 4.077 4 C -0.242 4.242 5 N -0.166 5.166 6 C -0.043 4.043 7 C 0.002 3.998 8 N -0.255 5.255 9 C 0.060 3.940 10 C -0.589 4.589 11 H 0.075 0.925 12 C -0.132 4.132 13 N -0.523 5.523 14 Si 0.712 3.288 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.008 3.992 19 C -0.022 4.022 20 C -0.237 4.237 21 C -0.242 4.242 22 C -0.120 4.120 23 O -0.051 6.051 24 C -0.361 4.361 25 S 0.332 5.668 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.209 0.791 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.934 3.760 -1.521 13.555 hybrid contribution 2.368 0.326 -0.405 2.424 sum -10.566 4.087 -1.927 11.491 Atomic orbital electron populations 1.21755 0.95351 1.01839 1.01740 1.21529 0.95728 0.95443 1.03189 1.20205 0.85514 0.98447 1.03554 1.26861 1.00914 1.05427 0.90991 1.66029 1.04853 1.14578 1.31166 1.20091 0.89391 1.00708 0.94136 1.20431 0.94940 0.91414 0.93057 1.62482 1.48798 1.11873 1.02325 1.19832 0.89876 0.94016 0.90324 1.21626 0.99650 1.08016 1.29617 0.92522 1.24890 0.98190 0.94638 0.95508 1.69950 1.34478 1.17314 1.30535 0.86727 0.84357 0.79289 0.78451 1.20696 1.21160 1.19903 1.20363 0.99981 0.87380 0.91492 1.22329 0.88197 0.92409 0.99235 1.21415 1.00999 0.95273 1.06047 1.21678 0.97855 0.97878 1.06784 1.23890 0.98415 0.89973 0.99682 1.84199 1.42593 1.19709 1.58549 1.26989 1.02722 1.10863 0.95531 1.83722 0.99230 1.69839 1.13964 0.92569 0.92517 0.92760 0.91017 0.91731 0.90241 0.89234 0.91409 0.91145 0.95201 0.94347 0.92856 0.91958 0.89769 0.84188 0.84368 0.79073 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.04 -0.41 5.80 -27.88 -0.16 -0.57 16 4 C 0.04 0.57 6.64 -13.46 -0.09 0.48 16 5 N -0.45 -8.21 10.53 -8.06 -0.08 -8.29 16 6 C 0.09 1.67 5.76 -84.22 -0.49 1.19 16 7 C 0.13 2.54 5.25 -4.97 -0.03 2.52 16 8 N -0.53 -11.35 4.65 -238.96 -1.11 -12.46 16 9 C 0.18 4.70 4.76 -4.98 -0.02 4.67 16 10 C -0.55 -14.42 7.34 -34.44 -0.25 -14.67 16 11 H 0.06 1.45 5.95 -52.48 -0.31 1.13 16 12 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 13 N -0.88 -25.59 13.29 55.43 0.74 -24.86 16 14 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.14 2.65 5.32 -4.97 -0.03 2.62 16 19 C 0.03 0.60 5.89 -35.63 -0.21 0.39 16 20 C -0.22 -3.90 10.81 -39.71 -0.43 -4.33 16 21 C -0.22 -3.66 10.91 -39.70 -0.43 -4.10 16 22 C -0.05 -0.89 12.09 29.42 0.36 -0.53 16 23 O -0.16 -3.36 9.94 5.74 0.06 -3.30 16 24 C -0.22 -4.09 10.00 29.12 0.29 -3.80 16 25 S 0.08 1.19 23.18 -107.50 -2.49 -1.30 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.35 6.08 -51.93 -0.32 1.04 16 34 H 0.07 1.21 7.81 -51.93 -0.41 0.81 16 35 H 0.03 0.82 6.65 -51.93 -0.35 0.48 16 36 H 0.04 1.10 6.63 -51.93 -0.34 0.76 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 39 H 0.08 1.38 7.86 -51.93 -0.41 0.97 16 40 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 41 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.19 2.58 8.06 -52.48 -0.42 2.15 16 43 H 0.18 3.48 8.06 -52.49 -0.42 3.06 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.80 369.42 -9.99 -40.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.26 Total: 4.62 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.38 Total: -16.67 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.46 Total: -45.61 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.80 -9.99 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176294988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.029 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds