Wall clock time and date at job start Tue Mar 31 2020 12:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46920 * 2 1 4 4 C 1.50703 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.29026 * 124.91716 * 90.00042 * 4 3 2 6 6 C 1.31779 * 117.12312 * 180.02562 * 5 4 3 7 7 C 1.50708 * 122.74574 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47302 * 275.02317 * 7 6 5 9 9 C 1.46898 * 111.00453 * 287.98856 * 8 7 6 10 10 C 1.50700 * 109.46728 * 299.47088 * 9 8 7 11 11 H 1.08003 * 120.00455 * 4.75865 * 10 9 8 12 12 C 1.37884 * 119.99936 * 184.76924 * 10 9 8 13 13 N 1.31509 * 119.99626 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99785 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47411 * 90.00024 * 14 12 10 16 16 H 1.48505 * 109.46939 * 209.99672 * 14 12 10 17 17 H 1.48498 * 109.47216 * 329.99473 * 14 12 10 18 18 C 1.46903 * 111.00118 * 164.03000 * 8 7 6 19 19 C 1.50701 * 109.47218 * 190.00235 * 18 8 7 20 20 C 1.34508 * 125.78863 * 90.00165 * 19 18 8 21 21 C 1.41378 * 106.84213 * 180.02562 * 20 19 18 22 22 C 1.34515 * 106.83960 * 359.97438 * 21 20 19 23 23 O 1.34297 * 108.41889 * 0.02562 * 22 21 20 24 24 C 1.33633 * 114.50485 * 0.23270 * 6 5 4 25 25 S 1.70972 * 124.91641 * 270.00388 * 4 3 2 26 26 H 1.09002 * 109.47651 * 59.99700 * 1 2 3 27 27 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47145 * 300.00163 * 1 2 3 29 29 H 1.08999 * 109.46831 * 240.00429 * 2 1 3 30 30 H 1.08994 * 109.47381 * 120.00330 * 2 1 3 31 31 H 1.08999 * 109.47018 * 60.00544 * 3 2 1 32 32 H 1.08999 * 109.47582 * 299.99923 * 3 2 1 33 33 H 1.09001 * 109.47008 * 155.02563 * 7 6 5 34 34 H 1.09001 * 109.46932 * 35.02728 * 7 6 5 35 35 H 1.08996 * 109.47120 * 59.46509 * 9 8 7 36 36 H 1.08999 * 109.47612 * 179.46705 * 9 8 7 37 37 H 0.97003 * 119.99770 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46755 * 70.00078 * 18 8 7 39 39 H 1.09002 * 109.46914 * 310.00541 * 18 8 7 40 40 H 1.08003 * 126.58140 * 0.05584 * 20 19 18 41 41 H 1.08001 * 126.58046 * 180.02562 * 21 20 19 42 42 H 1.08004 * 125.78845 * 180.26005 * 22 21 20 43 43 H 1.08001 * 126.04298 * 179.76735 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.2851 1.4428 -1.0589 6 6 5.5907 1.4423 -0.8808 7 6 6.5698 1.4418 -2.0265 8 7 6.7952 0.0621 -2.4775 9 6 7.5949 -0.6875 -1.4995 10 6 8.9357 -0.0206 -1.3303 11 1 9.1422 0.9123 -1.8337 12 6 9.8990 -0.6017 -0.5331 13 7 9.6474 -1.7376 0.0800 14 14 11.5612 0.2245 -0.3239 15 1 11.5119 1.1488 0.8373 16 1 12.6017 -0.8089 -0.0902 17 1 11.8914 0.9904 -1.5526 18 6 7.4273 0.0383 -3.8034 19 6 7.4195 -1.3706 -4.3384 20 6 6.4457 -1.9238 -5.0832 21 6 6.8465 -3.2507 -5.3615 22 6 8.0417 -3.4288 -4.7705 23 8 8.3837 -2.2867 -4.1521 24 6 5.9755 1.4367 0.3989 25 16 4.5262 1.4423 1.4009 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 7.5142 1.8754 -1.6975 34 1 6.1663 2.0318 -2.8494 35 1 7.0746 -0.7053 -0.5420 36 1 7.7389 -1.7082 -1.8538 37 1 10.3249 -2.1463 0.6412 38 1 8.4556 0.3904 -3.7220 39 1 6.8735 0.6876 -4.4816 40 1 5.5329 -1.4459 -5.4070 41 1 6.2987 -3.9809 -5.9386 42 1 8.6286 -4.3351 -4.7929 43 1 6.9948 1.4318 0.7560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176294988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:09 Heat of formation + Delta-G solvation = 36.608670 kcal Electronic energy + Delta-G solvation = -24606.810113 eV Core-core repulsion = 21165.660251 eV Total energy + Delta-G solvation = -3441.149862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.32865 -40.91660 -38.40978 -36.02716 -34.61435 -33.77266 -32.39432 -30.96291 -29.27571 -28.50636 -27.45396 -26.00341 -24.26489 -22.84681 -22.44706 -21.88682 -21.04928 -20.62059 -18.87581 -18.29209 -17.87569 -17.22429 -16.74866 -16.40305 -16.13047 -15.91624 -15.61396 -15.54155 -15.12869 -14.64187 -14.43938 -14.20881 -13.77039 -13.56215 -13.54916 -13.42993 -13.18614 -12.92235 -12.78923 -12.74371 -12.67303 -12.49563 -12.25535 -12.10715 -12.04643 -11.93044 -11.70209 -11.58588 -10.70746 -10.58410 -10.51377 -10.23399 -9.64700 -9.30123 -9.02781 -8.13165 -6.30976 -0.14864 0.50788 0.83134 0.94431 1.34708 1.36650 1.45652 1.77556 1.93028 2.34786 2.37177 3.13452 3.17402 3.54606 3.92275 3.96220 4.13271 4.15097 4.24647 4.29042 4.36345 4.40983 4.54539 4.60639 4.66130 4.69611 4.77392 4.83147 4.92279 4.98274 5.00814 5.13602 5.17979 5.23932 5.28629 5.31646 5.38006 5.40311 5.47073 5.76234 5.77714 5.99632 6.19204 6.39001 6.45482 6.86686 6.92337 7.39297 8.90234 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.004756 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.372676 B = 5885.975222 C = 7920.971606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.036 4.036 4 C 0.043 3.957 5 N -0.479 5.479 6 C 0.077 3.923 7 C 0.134 3.866 8 N -0.532 5.532 9 C 0.211 3.789 10 C -0.546 4.546 11 H 0.061 0.939 12 C 0.020 3.980 13 N -0.923 5.923 14 Si 0.948 3.052 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.138 3.862 19 C -0.008 4.008 20 C -0.211 4.211 21 C -0.219 4.219 22 C -0.063 4.063 23 O -0.196 6.196 24 C -0.257 4.257 25 S 0.131 5.869 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.001 0.999 36 H 0.000 1.000 37 H 0.262 0.738 38 H 0.043 0.957 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.174 0.826 42 H 0.223 0.777 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.168 4.793 -2.802 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.077 4.077 4 C -0.236 4.236 5 N -0.194 5.194 6 C -0.054 4.054 7 C 0.004 3.996 8 N -0.256 5.256 9 C 0.085 3.915 10 C -0.585 4.585 11 H 0.079 0.921 12 C -0.180 4.180 13 N -0.563 5.563 14 Si 0.774 3.226 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.192 1.192 18 C 0.010 3.990 19 C -0.059 4.059 20 C -0.231 4.231 21 C -0.238 4.238 22 C -0.130 4.130 23 O -0.092 6.092 24 C -0.397 4.397 25 S 0.385 5.615 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.136 0.864 40 H 0.178 0.822 41 H 0.191 0.809 42 H 0.240 0.760 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.730 4.514 -1.999 15.535 hybrid contribution 2.799 0.053 -0.270 2.813 sum -11.931 4.567 -2.269 12.975 Atomic orbital electron populations 1.21717 0.93008 1.02472 1.02907 1.21503 0.97710 0.94736 1.01758 1.20453 0.82585 0.99124 1.05515 1.27661 1.02618 1.02687 0.90593 1.66065 1.04396 1.16519 1.32429 1.20089 0.90079 1.01154 0.94115 1.20434 0.94795 0.90221 0.94154 1.62392 1.47929 1.12911 1.02349 1.19295 0.89850 0.92630 0.89754 1.21841 0.99992 1.07862 1.28827 0.92088 1.25677 1.01825 0.95164 0.95345 1.70086 1.35675 1.18930 1.31619 0.85707 0.79865 0.78310 0.78747 1.19743 1.21239 1.19169 1.20453 0.99227 0.88325 0.90959 1.22550 0.89280 0.92828 1.01229 1.21768 1.00802 0.95914 1.04574 1.22092 0.97490 0.97847 1.06344 1.24691 0.99479 0.89861 0.99009 1.84157 1.43913 1.21229 1.59945 1.26951 1.03555 1.12486 0.96671 1.83431 0.96739 1.68786 1.12508 0.91889 0.92222 0.91095 0.93468 0.92232 0.87240 0.88245 0.92698 0.88903 0.98082 0.98180 0.92930 0.93904 0.86418 0.82212 0.80866 0.76024 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16 3 C -0.04 -0.73 5.80 29.85 0.17 -0.56 16 4 C 0.04 1.27 6.64 88.52 0.59 1.86 16 5 N -0.48 -17.23 10.53 -179.40 -1.89 -19.12 16 6 C 0.08 2.99 5.76 41.52 0.24 3.23 16 7 C 0.13 5.27 5.25 85.56 0.45 5.71 16 8 N -0.53 -23.41 4.65 -909.94 -4.23 -27.64 16 9 C 0.21 11.27 4.76 85.56 0.41 11.67 16 10 C -0.55 -29.69 7.34 25.60 0.19 -29.50 16 11 H 0.06 3.20 5.95 -2.91 -0.02 3.19 16 12 C 0.02 1.09 5.46 84.66 0.46 1.56 16 13 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 14 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 C 0.14 5.46 5.32 85.56 0.45 5.91 16 19 C -0.01 -0.34 5.89 24.83 0.15 -0.20 16 20 C -0.21 -7.33 10.81 22.19 0.24 -7.09 16 21 C -0.22 -6.82 10.91 22.19 0.24 -6.58 16 22 C -0.06 -2.16 12.09 66.97 0.81 -1.35 16 23 O -0.20 -8.68 9.94 -2.37 -0.02 -8.70 16 24 C -0.26 -9.79 10.00 66.77 0.67 -9.12 16 25 S 0.13 3.85 23.18 -56.49 -1.31 2.54 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 2.27 6.08 -2.39 -0.01 2.26 16 34 H 0.09 3.17 7.81 -2.39 -0.02 3.15 16 35 H 0.00 0.06 6.65 -2.39 -0.02 0.05 16 36 H 0.00 0.00 6.63 -2.39 -0.02 -0.01 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.04 1.84 6.62 -2.39 -0.02 1.82 16 39 H 0.12 3.76 7.86 -2.39 -0.02 3.74 16 40 H 0.16 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.22 5.73 8.06 -2.91 -0.02 5.71 16 43 H 0.16 6.67 8.06 -2.91 -0.02 6.65 16 Total: -1.00 -69.40 369.42 1.82 -67.57 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 1.00 Total: 22.56 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.96 Total: -27.99 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -5.83 Total: -101.84 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.02 Total: -8.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.31 Total: 2.54 kcal Total: -69.40 1.82 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176294988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.182 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds