Wall clock time and date at job start Tue Mar 31 2020 12:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 C 1.50701 * 109.46892 * 240.00474 * 2 1 3 5 5 H 1.08003 * 119.99561 * 239.99925 * 4 2 1 6 6 C 1.37874 * 120.00335 * 59.99933 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46972 * 60.00315 * 8 6 4 10 10 H 1.48502 * 109.47205 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47336 * 299.99813 * 8 6 4 12 12 C 1.52994 * 109.47208 * 120.00132 * 2 1 3 13 13 O 1.45202 * 109.46919 * 300.00395 * 12 2 1 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 2 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38262 * 119.94179 * 269.72262 * 17 16 14 19 19 C 1.38194 * 120.10924 * 179.77318 * 18 17 16 20 20 C 1.38703 * 120.06790 * 0.56861 * 19 18 17 21 21 C 1.38971 * 119.82257 * 359.61905 * 20 19 18 22 22 C 1.38195 * 119.94762 * 89.99580 * 17 16 14 23 23 O 1.36099 * 120.78437 * 180.26412 * 21 20 19 24 24 C 1.43177 * 116.71907 * 342.82007 * 23 21 20 25 25 C 1.53468 * 108.25133 * 46.15967 * 24 23 21 26 26 O 1.36110 * 119.39346 * 179.53374 * 20 19 18 27 27 H 1.08996 * 109.47459 * 300.00192 * 1 2 3 28 28 H 1.09001 * 109.46957 * 59.99663 * 1 2 3 29 29 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47128 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47549 * 299.99975 * 3 2 1 32 32 H 1.09005 * 109.47490 * 60.00171 * 3 2 1 33 33 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47242 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46797 * 59.99640 * 12 2 1 36 36 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 37 37 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 38 38 H 1.07994 * 119.94190 * 0.03367 * 18 17 16 39 39 H 1.08000 * 119.96462 * 180.29556 * 19 18 17 40 40 H 1.07996 * 119.96290 * 359.97438 * 22 17 16 41 41 H 1.09003 * 109.71125 * 165.85177 * 24 23 21 42 42 H 1.09003 * 109.70550 * 286.46884 * 24 23 21 43 43 H 1.08997 * 109.71075 * 59.94570 * 25 24 23 44 44 H 1.08999 * 109.71242 * 180.58122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1188 -4.0078 12 6 2.0400 -0.7212 1.2492 13 8 1.5559 -0.0368 2.4347 14 6 1.9170 -0.5466 3.6228 15 8 2.6142 -1.5324 3.6705 16 6 1.4475 0.1065 4.8971 17 6 1.9823 -0.6583 6.0803 18 6 1.2467 -1.6971 6.6202 19 6 1.7360 -2.4038 7.7023 20 6 2.9613 -2.0651 8.2570 21 6 3.6989 -1.0185 7.7168 22 6 3.2045 -0.3166 6.6274 23 8 4.9058 -0.6730 8.2422 24 6 5.1962 -1.1542 9.5591 25 6 4.8219 -2.6412 9.6208 26 8 3.4256 -2.7642 9.3285 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7089 1.1615 -3.4844 34 1 3.1300 -0.7216 1.2489 35 1 1.6766 -1.7489 1.2491 36 1 1.8107 1.1336 4.9341 37 1 0.3579 0.1053 4.9260 38 1 0.2902 -1.9593 6.1929 39 1 1.1616 -3.2179 8.1191 40 1 3.7752 0.4978 6.2063 41 1 6.2591 -1.0336 9.7685 42 1 4.6114 -0.5972 10.2912 43 1 5.4020 -3.1972 8.8843 44 1 5.0243 -3.0301 10.6187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184778918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:35 Heat of formation + Delta-G solvation = -158.538764 kcal Electronic energy + Delta-G solvation = -26519.561216 eV Core-core repulsion = 22594.903504 eV Total energy + Delta-G solvation = -3924.657712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26958 -41.40686 -39.14098 -38.26071 -38.08726 -36.54226 -33.69696 -33.19227 -31.89588 -30.54627 -28.56392 -27.54284 -27.40268 -26.85655 -25.44009 -23.85145 -22.44859 -21.23698 -20.68098 -19.60141 -18.67866 -18.29455 -18.24600 -17.72961 -17.35274 -17.15949 -16.51439 -16.39826 -16.03615 -15.43577 -15.40688 -15.22924 -14.97096 -14.88273 -14.66125 -14.53116 -13.89581 -13.53902 -13.39532 -13.10050 -13.07527 -12.98469 -12.79732 -12.64109 -12.59480 -12.30014 -12.13113 -12.07852 -12.00265 -11.68720 -11.55224 -11.47341 -11.24093 -11.13835 -10.72262 -10.38985 -9.64720 -9.07478 -8.03621 -6.21664 0.14494 0.28958 1.30365 1.44668 1.44842 1.52110 1.87337 2.04126 2.27713 2.45701 2.72336 3.19497 3.27525 3.59342 3.65193 3.92340 3.98975 4.06933 4.08299 4.26298 4.29108 4.31759 4.33641 4.47121 4.56033 4.59067 4.64275 4.65385 4.87600 4.89895 5.06215 5.07697 5.12007 5.22717 5.26156 5.39741 5.47872 5.59267 5.63498 5.66525 5.73769 5.87710 6.10801 6.20292 6.38120 6.38963 6.80237 6.88789 7.46121 8.95641 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.002317 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.178422 B =12083.326049 C =12274.184030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.098 3.902 13 O -0.352 6.352 14 C 0.452 3.548 15 O -0.545 6.545 16 C -0.062 4.062 17 C -0.077 4.077 18 C -0.101 4.101 19 C -0.120 4.120 20 C 0.039 3.961 21 C 0.035 3.965 22 C -0.112 4.112 23 O -0.327 6.327 24 C 0.014 3.986 25 C 0.013 3.987 26 O -0.321 6.321 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -1.954 26.024 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.177 4.177 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.025 3.975 13 O -0.268 6.268 14 C 0.296 3.704 15 O -0.436 6.436 16 C -0.099 4.099 17 C -0.078 4.078 18 C -0.119 4.119 19 C -0.139 4.139 20 C -0.006 4.006 21 C -0.009 4.009 22 C -0.131 4.131 23 O -0.242 6.242 24 C -0.060 4.060 25 C -0.061 4.061 26 O -0.236 6.236 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.274 -2.131 25.896 26.189 hybrid contribution 0.820 -0.733 -1.054 1.524 sum 4.095 -2.865 24.842 25.340 Atomic orbital electron populations 1.21620 0.96921 0.98622 1.00487 1.18262 0.93764 0.93248 0.88702 1.21630 0.97652 0.97952 1.00480 1.21184 1.32375 1.12474 0.91337 0.93497 1.25491 0.94999 0.95577 1.01087 1.69926 1.36643 1.23178 1.23894 0.85734 0.78629 0.78782 0.79186 1.20052 1.20583 1.20133 1.23184 0.97267 0.95122 0.81942 1.86506 1.69332 1.55873 1.15092 1.24426 0.77006 0.82314 0.86609 1.90646 1.37122 1.27326 1.88489 1.20394 1.05278 1.00658 0.83562 1.19164 0.94445 0.97854 0.96288 1.21100 1.01133 0.94312 0.95329 1.20669 0.94564 1.01782 0.96839 1.19097 0.96507 0.93116 0.91909 1.18933 0.88053 0.95970 0.97984 1.20454 0.95723 1.00907 0.95988 1.86282 1.31621 1.73018 1.33327 1.23971 1.05726 0.94441 0.81886 1.23957 0.79290 0.97183 1.05705 1.86272 1.27078 1.66287 1.43970 0.94480 0.91882 0.96176 0.96327 0.91834 0.94533 0.92808 0.93720 0.93471 0.84339 0.83461 0.82892 0.82982 0.84510 0.83064 0.89748 0.90893 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.11 71.98 0.58 -5.07 16 2 C 0.06 2.97 0.58 -52.93 -0.03 2.94 16 3 C -0.12 -5.72 8.11 71.98 0.58 -5.14 16 4 C -0.54 -29.02 8.01 25.60 0.21 -28.82 16 5 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -48.95 9.35 21.45 0.20 -48.74 16 8 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.10 4.40 4.26 71.98 0.31 4.70 16 13 O -0.35 -13.43 8.88 -51.41 -0.46 -13.89 16 14 C 0.45 15.07 7.95 71.23 0.57 15.63 16 15 O -0.55 -22.00 15.78 21.94 0.35 -21.65 16 16 C -0.06 -1.35 5.94 29.10 0.17 -1.18 16 17 C -0.08 -1.83 4.37 -19.87 -0.09 -1.92 16 18 C -0.10 -2.20 9.69 22.26 0.22 -1.98 16 19 C -0.12 -2.65 9.96 22.37 0.22 -2.43 16 20 C 0.04 0.94 6.49 22.56 0.15 1.08 16 21 C 0.04 0.91 6.49 22.56 0.15 1.05 16 22 C -0.11 -2.85 9.61 22.37 0.22 -2.64 16 23 O -0.33 -7.50 10.42 -82.45 -0.86 -8.36 16 24 C 0.01 0.18 7.26 72.14 0.52 0.71 16 25 C 0.01 0.17 7.26 72.14 0.52 0.70 16 26 O -0.32 -6.72 10.42 -82.57 -0.86 -7.58 16 27 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 28 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 32 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.04 2.06 8.13 -2.39 -0.02 2.04 16 35 H 0.05 2.15 8.13 -2.38 -0.02 2.13 16 36 H 0.14 2.36 8.08 -2.38 -0.02 2.34 16 37 H 0.15 2.29 8.08 -2.39 -0.02 2.28 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -68.90 363.97 6.13 -62.78 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.00 Total: 12.93 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.73 Total: -20.37 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.20 Total: -48.74 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -1.83 Total: -51.48 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.90 6.13 -62.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184778918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.764 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds