Wall clock time and date at job start Tue Mar 31 2020 13:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47534 * 2 1 4 4 H 1.09002 * 109.46447 * 305.00086 * 3 2 1 5 5 C 1.50690 * 109.47453 * 184.99851 * 3 2 1 6 6 H 1.07994 * 120.00532 * 239.99652 * 5 3 2 7 7 C 1.37880 * 120.00082 * 59.99928 * 5 3 2 8 8 N 1.31522 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00465 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46681 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47227 * 119.99574 * 9 7 5 12 12 H 1.48497 * 109.47128 * 240.00196 * 9 7 5 13 13 O 1.45195 * 109.46920 * 64.99608 * 3 2 1 14 14 C 1.34228 * 117.00519 * 270.00429 * 13 3 2 15 15 O 1.20835 * 119.99706 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00586 * 180.02562 * 14 13 3 17 17 H 1.08994 * 109.68726 * 299.44971 * 16 14 13 18 18 C 1.53412 * 109.69506 * 59.99913 * 16 14 13 19 19 O 1.42823 * 108.36402 * 184.43694 * 18 16 14 20 20 C 1.35947 * 117.83937 * 310.68146 * 19 18 16 21 21 C 1.39132 * 118.43061 * 197.29244 * 20 19 18 22 22 C 1.37948 * 120.28537 * 180.17039 * 21 20 19 23 23 C 1.38715 * 119.89830 * 0.53326 * 22 21 20 24 24 O 1.35985 * 120.06807 * 179.63822 * 23 22 21 25 25 C 1.42901 * 116.99650 * 359.72889 * 24 23 22 26 26 C 1.38537 * 119.86861 * 359.37024 * 23 22 21 27 27 C 1.38352 * 121.77519 * 17.54036 * 20 19 18 28 28 C 1.50769 * 121.40558 * 359.18178 * 27 20 19 29 29 H 1.09002 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46845 * 300.00341 * 1 2 3 31 31 H 1.09005 * 109.47091 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.47573 * 239.99585 * 2 1 3 33 33 H 1.09005 * 109.47091 * 119.99956 * 2 1 3 34 34 H 0.96995 * 120.00372 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.68729 * 64.71170 * 18 16 14 36 36 H 1.09008 * 109.71478 * 304.17263 * 18 16 14 37 37 H 1.08001 * 119.85660 * 0.41739 * 21 20 19 38 38 H 1.07999 * 120.04938 * 180.28516 * 22 21 20 39 39 H 1.08999 * 109.47144 * 59.99816 * 25 24 23 40 40 H 1.09005 * 109.47329 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.47352 * 299.99791 * 25 24 23 42 42 H 1.07997 * 119.86145 * 180.25525 * 26 23 22 43 43 H 1.09001 * 109.43475 * 138.04898 * 28 27 20 44 44 H 1.09003 * 109.43298 * 257.90024 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5987 1.5473 -0.1948 11 1 6.4971 -0.5176 -1.4629 12 1 6.3990 1.6166 -2.6102 13 8 1.6559 2.0917 1.2406 14 6 0.4728 2.7254 1.2559 15 8 -0.2188 2.7378 0.2652 16 6 0.0074 3.4226 2.5083 17 1 -0.0818 2.6999 3.3193 18 6 1.0133 4.5139 2.8967 19 8 0.6007 5.0846 4.1393 20 6 -0.6965 5.4729 4.2599 21 6 -1.0339 6.3446 5.2905 22 6 -2.3394 6.7607 5.4504 23 6 -3.3226 6.2998 4.5873 24 8 -4.6119 6.7019 4.7463 25 6 -4.8839 7.5958 5.8275 26 6 -2.9876 5.4334 3.5595 27 6 -1.6759 5.0210 3.3935 28 6 -1.3488 4.0860 2.2569 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0611 -2.9499 35 1 1.0334 5.2854 2.1270 36 1 2.0062 4.0773 3.0048 37 1 -0.2697 6.7003 5.9657 38 1 -2.5962 7.4410 6.2489 39 1 -4.3058 8.5106 5.6969 40 1 -5.9468 7.8370 5.8410 41 1 -4.6066 7.1221 6.7692 42 1 -3.7525 5.0779 2.8851 43 1 -2.1199 3.3190 2.1849 44 1 -1.3099 4.6487 1.3241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187902258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:09 Heat of formation + Delta-G solvation = -147.957997 kcal Electronic energy + Delta-G solvation = -26967.381100 eV Core-core repulsion = 23043.182205 eV Total energy + Delta-G solvation = -3924.198895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07040 -39.87528 -39.13734 -36.54167 -36.07454 -34.17872 -33.53862 -31.47253 -30.87402 -30.07836 -27.52148 -27.30643 -25.78570 -24.55142 -23.14136 -22.80272 -21.31122 -20.06036 -19.33470 -18.05374 -17.86531 -17.20268 -16.90557 -16.56974 -15.96983 -15.59922 -15.49969 -15.16638 -14.67105 -14.51363 -14.27124 -13.86530 -13.54892 -13.33833 -13.19989 -13.07828 -12.90040 -12.82019 -12.20202 -12.14110 -11.87007 -11.54849 -11.37051 -11.21984 -11.17122 -11.09117 -10.99450 -10.70335 -10.64428 -10.44524 -10.31332 -9.84762 -9.65649 -9.42244 -9.00721 -8.85434 -8.50057 -7.85961 -6.22654 -4.29997 1.05862 1.30145 2.81984 2.99964 3.20938 3.23350 3.28249 3.32333 3.48629 3.62514 4.28865 4.49902 4.53874 4.59047 4.71097 4.79560 4.85568 4.92973 5.05073 5.09710 5.11708 5.16442 5.40342 5.47404 5.59343 5.71898 5.74251 5.79026 5.90222 6.00601 6.13599 6.18658 6.24916 6.28965 6.37116 6.41822 6.81844 6.91115 7.10864 7.11604 7.19124 7.39060 7.57204 7.68564 7.88383 8.10516 8.54672 8.82658 9.35525 10.84091 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.002679 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.495098 B =10447.685048 C =11178.915130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.509 6.509 16 C -0.122 4.122 17 H 0.117 0.883 18 C 0.074 3.926 19 O -0.309 6.309 20 C 0.096 3.904 21 C -0.108 4.108 22 C -0.177 4.177 23 C 0.093 3.907 24 O -0.319 6.319 25 C 0.028 3.972 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.065 4.065 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 11.734 14.781 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.269 6.269 14 C 0.303 3.697 15 O -0.398 6.398 16 C -0.141 4.141 17 H 0.135 0.865 18 C -0.001 4.001 19 O -0.223 6.223 20 C 0.051 3.949 21 C -0.127 4.127 22 C -0.195 4.195 23 C 0.049 3.951 24 O -0.233 6.233 25 C -0.067 4.067 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.101 4.101 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.111 0.889 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.295 11.572 14.297 22.125 hybrid contribution 0.803 -0.101 -0.231 0.841 sum -11.492 11.472 14.067 21.484 Atomic orbital electron populations 1.21861 0.98372 0.99085 1.00685 1.22027 0.92633 0.99331 1.03446 1.20725 0.95110 0.88805 0.78475 0.93441 1.21066 0.89582 1.39029 1.06268 0.91220 1.24893 0.99275 0.94733 0.95064 1.69897 1.35335 1.37794 1.09470 0.86233 0.83845 0.77920 0.78241 1.19444 1.20702 1.20757 1.86469 1.33808 1.62244 1.44366 1.22730 0.81161 0.77209 0.88627 1.90626 1.55385 1.58427 1.35409 1.21648 0.96813 0.98744 0.96918 0.86537 1.22974 0.98353 0.94145 0.84629 1.86063 1.23399 1.76509 1.36352 1.18649 0.83680 0.96128 0.96449 1.20353 0.96329 0.97381 0.98633 1.20982 0.92709 1.04240 1.01612 1.18780 0.83369 0.96875 0.96095 1.86076 1.24156 1.62451 1.50612 1.23021 1.02495 0.92385 0.88789 1.20106 0.95667 0.99272 0.98290 1.19633 0.92621 1.00402 0.98619 1.20392 0.95692 0.97615 0.96445 0.94752 0.95038 0.92784 0.87279 0.93919 0.92398 0.91030 0.85465 0.84820 0.84987 0.92769 0.88394 0.92752 0.84756 0.88920 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 37.16 0.32 -2.74 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.68 2.25 -27.89 -0.06 5.61 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.16 8.90 -34.44 -0.31 -14.47 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.60 11.30 55.43 0.63 -23.97 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.35 -7.90 9.66 -39.25 -0.38 -8.28 16 14 C 0.46 8.96 5.72 36.01 0.21 9.17 16 15 O -0.51 -11.04 12.95 -18.76 -0.24 -11.28 16 16 C -0.12 -1.80 2.86 -91.53 -0.26 -2.06 16 17 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 18 C 0.07 1.02 6.28 37.37 0.23 1.25 16 19 O -0.31 -4.24 10.27 -19.57 -0.20 -4.44 16 20 C 0.10 1.25 6.47 -39.21 -0.25 0.99 16 21 C -0.11 -1.20 9.93 -39.36 -0.39 -1.59 16 22 C -0.18 -1.76 9.03 -39.51 -0.36 -2.12 16 23 C 0.09 1.05 6.68 -39.29 -0.26 0.79 16 24 O -0.32 -3.32 10.50 -19.69 -0.21 -3.52 16 25 C 0.03 0.17 9.81 101.05 0.99 1.17 16 26 C -0.11 -1.37 9.60 -39.37 -0.38 -1.75 16 27 C -0.11 -1.43 5.75 -104.45 -0.60 -2.03 16 28 C -0.06 -0.87 4.65 -27.82 -0.13 -1.00 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 31 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 32 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.72 8.05 -51.92 -0.42 1.30 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 0.95 6.31 -52.49 -0.33 0.62 16 39 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.28 7.68 -51.93 -0.40 -0.12 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.35 7.71 -51.93 -0.40 0.95 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -30.25 358.27 -7.79 -38.04 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.27 Total: 3.07 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.49 Total: -10.65 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.03 Total: -27.53 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.25 -7.79 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.915 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds