Wall clock time and date at job start Tue Mar 31 2020 13:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47534 * 2 1 4 4 H 1.09002 * 109.46447 * 305.00086 * 3 2 1 5 5 C 1.50690 * 109.47453 * 184.99851 * 3 2 1 6 6 H 1.07994 * 120.00532 * 239.99652 * 5 3 2 7 7 C 1.37880 * 120.00082 * 59.99928 * 5 3 2 8 8 N 1.31522 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00465 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46681 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47227 * 119.99574 * 9 7 5 12 12 H 1.48497 * 109.47128 * 240.00196 * 9 7 5 13 13 O 1.45195 * 109.46920 * 64.99608 * 3 2 1 14 14 C 1.34228 * 117.00519 * 270.00429 * 13 3 2 15 15 O 1.20835 * 119.99706 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00586 * 180.02562 * 14 13 3 17 17 H 1.08994 * 109.68726 * 299.44971 * 16 14 13 18 18 C 1.53412 * 109.69506 * 59.99913 * 16 14 13 19 19 O 1.42823 * 108.36402 * 184.43694 * 18 16 14 20 20 C 1.35947 * 117.83937 * 310.68146 * 19 18 16 21 21 C 1.39132 * 118.43061 * 197.29244 * 20 19 18 22 22 C 1.37948 * 120.28537 * 180.17039 * 21 20 19 23 23 C 1.38715 * 119.89830 * 0.53326 * 22 21 20 24 24 O 1.35985 * 120.06807 * 179.63822 * 23 22 21 25 25 C 1.42901 * 116.99650 * 359.72889 * 24 23 22 26 26 C 1.38537 * 119.86861 * 359.37024 * 23 22 21 27 27 C 1.38352 * 121.77519 * 17.54036 * 20 19 18 28 28 C 1.50769 * 121.40558 * 359.18178 * 27 20 19 29 29 H 1.09002 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46845 * 300.00341 * 1 2 3 31 31 H 1.09005 * 109.47091 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.47573 * 239.99585 * 2 1 3 33 33 H 1.09005 * 109.47091 * 119.99956 * 2 1 3 34 34 H 0.96995 * 120.00372 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.68729 * 64.71170 * 18 16 14 36 36 H 1.09008 * 109.71478 * 304.17263 * 18 16 14 37 37 H 1.08001 * 119.85660 * 0.41739 * 21 20 19 38 38 H 1.07999 * 120.04938 * 180.28516 * 22 21 20 39 39 H 1.08999 * 109.47144 * 59.99816 * 25 24 23 40 40 H 1.09005 * 109.47329 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.47352 * 299.99791 * 25 24 23 42 42 H 1.07997 * 119.86145 * 180.25525 * 26 23 22 43 43 H 1.09001 * 109.43475 * 138.04898 * 28 27 20 44 44 H 1.09003 * 109.43298 * 257.90024 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5987 1.5473 -0.1948 11 1 6.4971 -0.5176 -1.4629 12 1 6.3990 1.6166 -2.6102 13 8 1.6559 2.0917 1.2406 14 6 0.4728 2.7254 1.2559 15 8 -0.2188 2.7378 0.2652 16 6 0.0074 3.4226 2.5083 17 1 -0.0818 2.6999 3.3193 18 6 1.0133 4.5139 2.8967 19 8 0.6007 5.0846 4.1393 20 6 -0.6965 5.4729 4.2599 21 6 -1.0339 6.3446 5.2905 22 6 -2.3394 6.7607 5.4504 23 6 -3.3226 6.2998 4.5873 24 8 -4.6119 6.7019 4.7463 25 6 -4.8839 7.5958 5.8275 26 6 -2.9876 5.4334 3.5595 27 6 -1.6759 5.0210 3.3935 28 6 -1.3488 4.0860 2.2569 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0611 -2.9499 35 1 1.0334 5.2854 2.1270 36 1 2.0062 4.0773 3.0048 37 1 -0.2697 6.7003 5.9657 38 1 -2.5962 7.4410 6.2489 39 1 -4.3058 8.5106 5.6969 40 1 -5.9468 7.8370 5.8410 41 1 -4.6066 7.1221 6.7692 42 1 -3.7525 5.0779 2.8851 43 1 -2.1199 3.3190 2.1849 44 1 -1.3099 4.6487 1.3241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187902258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:09 Heat of formation + Delta-G solvation = -164.108984 kcal Electronic energy + Delta-G solvation = -26968.081460 eV Core-core repulsion = 23043.182205 eV Total energy + Delta-G solvation = -3924.899255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17691 -41.23538 -40.14591 -37.81897 -37.41535 -35.57335 -35.27440 -33.36158 -31.92144 -30.93161 -29.34762 -28.05746 -26.83349 -25.92106 -24.91132 -23.69708 -22.72867 -21.60190 -20.77911 -19.12502 -18.97773 -18.64950 -18.33114 -17.87156 -17.27260 -17.04194 -16.61148 -16.38566 -16.10281 -15.54336 -15.45713 -15.13608 -14.83996 -14.59017 -14.38688 -14.26954 -14.10215 -13.92737 -13.69767 -13.38229 -13.29541 -13.10296 -12.87690 -12.82505 -12.68275 -12.53206 -12.18223 -12.13326 -12.06922 -11.76807 -11.66862 -11.45803 -11.35696 -11.18205 -10.82580 -10.53095 -9.89583 -8.75155 -8.27409 -6.43707 0.18985 0.40630 1.23892 1.42400 1.42868 1.56137 1.83473 2.25336 2.40442 2.43427 2.67670 3.02608 3.34425 3.46189 3.66345 3.76387 3.88042 3.96512 4.11775 4.25101 4.34867 4.36857 4.39129 4.44009 4.45986 4.51432 4.54333 4.63489 4.76040 4.78888 4.82866 4.86207 4.90520 4.99612 5.08213 5.20427 5.29599 5.34219 5.38284 5.51509 5.53112 5.66843 5.96631 6.11242 6.27098 6.50981 6.60752 6.93917 7.27507 8.79439 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.002679 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.495098 B =10447.685048 C =11178.915130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.277 1.277 13 O -0.358 6.358 14 C 0.460 3.540 15 O -0.533 6.533 16 C -0.110 4.110 17 H 0.131 0.869 18 C 0.078 3.922 19 O -0.312 6.312 20 C 0.071 3.929 21 C -0.107 4.107 22 C -0.168 4.168 23 C 0.092 3.908 24 O -0.336 6.336 25 C 0.017 3.983 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.059 4.059 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.270 0.730 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 12.756 16.930 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.203 1.203 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.423 6.423 16 C -0.129 4.129 17 H 0.149 0.851 18 C 0.003 3.997 19 O -0.226 6.226 20 C 0.026 3.974 21 C -0.125 4.125 22 C -0.186 4.186 23 C 0.047 3.953 24 O -0.251 6.251 25 C -0.077 4.077 26 C -0.147 4.147 27 C -0.120 4.120 28 C -0.095 4.095 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.114 0.886 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.556 12.610 16.469 24.247 hybrid contribution 0.719 -0.314 -0.838 1.148 sum -11.837 12.296 15.631 23.144 Atomic orbital electron populations 1.21720 0.96270 1.00634 1.00142 1.21880 0.94477 0.98177 1.02382 1.20405 0.94590 0.89269 0.78548 0.97292 1.21355 0.90475 1.39772 1.06810 0.91389 1.25784 1.04065 0.93978 0.94460 1.70017 1.37307 1.38032 1.09889 0.85189 0.77948 0.78238 0.78379 1.18678 1.19861 1.20298 1.86458 1.35521 1.62795 1.42657 1.23587 0.79836 0.76368 0.89873 1.90615 1.55738 1.59138 1.36847 1.21673 0.97693 0.99016 0.94516 0.85086 1.22891 0.98000 0.93752 0.85067 1.86057 1.24051 1.76694 1.35799 1.18931 0.83272 0.97503 0.97662 1.20646 0.97333 0.96473 0.98070 1.21313 0.91801 1.03805 1.01721 1.18916 0.84208 0.96376 0.95811 1.86065 1.23550 1.63220 1.52230 1.23356 1.04052 0.92208 0.88100 1.20208 0.95432 0.99992 0.99103 1.19517 0.93169 1.00789 0.98522 1.20311 0.94911 0.97769 0.96559 0.92085 0.94356 0.94467 0.89581 0.93536 0.92089 0.91056 0.85347 0.82927 0.81813 0.91546 0.86557 0.91476 0.84458 0.88563 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.57 71.98 0.62 -5.00 16 2 C -0.13 -6.50 5.49 30.59 0.17 -6.33 16 3 C 0.22 11.94 2.25 29.85 0.07 12.00 16 4 H 0.01 0.55 7.16 -2.39 -0.02 0.54 16 5 C -0.55 -30.30 8.90 25.60 0.23 -30.07 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 0.92 5.29 84.65 0.45 1.36 16 8 N -0.91 -51.72 11.30 21.45 0.24 -51.48 16 9 Si 0.98 42.38 29.54 68.60 2.03 44.40 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 O -0.36 -16.40 9.66 -51.40 -0.50 -16.90 16 14 C 0.46 18.25 5.72 71.24 0.41 18.66 16 15 O -0.53 -23.89 12.95 21.94 0.28 -23.60 16 16 C -0.11 -3.24 2.86 -11.38 -0.03 -3.27 16 17 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 18 C 0.08 2.14 6.28 72.12 0.45 2.59 16 19 O -0.31 -8.24 10.27 -92.95 -0.95 -9.19 16 20 C 0.07 1.75 6.47 22.51 0.15 1.90 16 21 C -0.11 -2.11 9.93 22.42 0.22 -1.88 16 22 C -0.17 -2.86 9.03 22.31 0.20 -2.65 16 23 C 0.09 1.89 6.68 22.46 0.15 2.04 16 24 O -0.34 -6.28 10.50 -93.38 -0.98 -7.26 16 25 C 0.02 0.16 9.81 113.37 1.11 1.27 16 26 C -0.13 -2.98 9.60 22.40 0.22 -2.76 16 27 C -0.12 -2.98 5.75 -19.75 -0.11 -3.09 16 28 C -0.06 -1.59 4.65 29.89 0.14 -1.45 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.04 1.56 6.06 -2.39 -0.01 1.55 16 31 H 0.04 1.70 7.80 -2.38 -0.02 1.68 16 32 H 0.09 4.68 5.95 -2.39 -0.01 4.67 16 33 H 0.05 2.21 8.14 -2.38 -0.02 2.20 16 34 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.13 3.45 8.05 -2.38 -0.02 3.43 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 1.66 6.31 -2.91 -0.02 1.65 16 39 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 40 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.46 7.68 -2.39 -0.02 0.44 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 Total: -1.00 -66.10 358.27 5.56 -60.55 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.01 Total: 20.18 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.43 Total: -16.69 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.24 Total: -51.48 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -2.15 Total: -56.96 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.10 5.56 -60.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.563 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds