Wall clock time and date at job start Tue Mar 31 2020 13:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.09003 * 109.47155 * 55.00129 * 3 2 1 5 5 C 1.50703 * 109.46953 * 175.00054 * 3 2 1 6 6 H 1.08004 * 119.99935 * 120.00465 * 5 3 2 7 7 C 1.37875 * 120.00266 * 299.99697 * 5 3 2 8 8 N 1.31509 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00183 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47245 * 120.00044 * 9 7 5 12 12 H 1.48502 * 109.47221 * 240.00514 * 9 7 5 13 13 O 1.45201 * 109.47204 * 295.00104 * 3 2 1 14 14 C 1.34231 * 116.99858 * 89.99806 * 13 3 2 15 15 O 1.20822 * 119.99951 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99728 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.69701 * 60.00147 * 16 14 13 18 18 C 1.53405 * 109.70144 * 299.43477 * 16 14 13 19 19 O 1.42819 * 108.38698 * 175.54411 * 18 16 14 20 20 C 1.35952 * 117.87265 * 49.12011 * 19 18 16 21 21 C 1.39137 * 118.43746 * 162.88428 * 20 19 18 22 22 C 1.37942 * 120.29078 * 179.76118 * 21 20 19 23 23 C 1.38719 * 119.90369 * 359.97438 * 22 21 20 24 24 O 1.35989 * 120.06744 * 180.02562 * 23 22 21 25 25 C 1.42899 * 116.99776 * 0.02720 * 24 23 22 26 26 C 1.38529 * 119.86055 * 0.09173 * 23 22 21 27 27 C 1.38350 * 121.78296 * 342.81803 * 20 19 18 28 28 C 1.50869 * 121.42213 * 0.53902 * 27 20 19 29 29 H 1.09005 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47729 * 60.00213 * 1 2 3 32 32 H 1.09004 * 109.47301 * 240.00199 * 2 1 3 33 33 H 1.09004 * 109.47716 * 119.99974 * 2 1 3 34 34 H 0.97006 * 120.00003 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.68577 * 295.27005 * 18 16 14 36 36 H 1.08997 * 109.68312 * 55.78389 * 18 16 14 37 37 H 1.08000 * 119.84869 * 359.74799 * 21 20 19 38 38 H 1.08003 * 120.04514 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46732 * 179.97438 * 25 24 23 40 40 H 1.08993 * 109.47183 * 299.99410 * 25 24 23 41 41 H 1.08998 * 109.47511 * 59.99999 * 25 24 23 42 42 H 1.08003 * 119.86115 * 179.97438 * 26 23 22 43 43 H 1.09000 * 109.49002 * 222.01284 * 28 27 20 44 44 H 1.09004 * 109.43619 * 102.11207 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.5986 1.5473 0.1947 11 1 6.3990 1.6168 2.6101 12 1 6.4970 -0.5175 1.4628 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7377 -0.2652 16 6 0.0068 3.4216 -2.5086 17 1 -0.0735 2.7001 -3.3217 18 6 1.0051 4.5220 -2.8904 19 8 0.5937 5.0920 -4.1336 20 6 -0.7070 5.4665 -4.2616 21 6 -1.0479 6.3348 -5.2940 22 6 -2.3570 6.7357 -5.4622 23 6 -3.3388 6.2714 -4.5991 24 8 -4.6305 6.6641 -4.7622 25 6 -4.9057 7.5562 -5.8440 26 6 -3.0004 5.4080 -3.5700 27 6 -1.6859 5.0071 -3.3987 28 6 -1.3559 4.0732 -2.2606 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0617 2.9495 35 1 1.0155 5.2921 -2.1190 36 1 2.0019 4.0935 -2.9945 37 1 -0.2841 6.6965 -5.9664 38 1 -2.6173 7.4094 -6.2651 39 1 -5.9705 7.7888 -5.8612 40 1 -4.3348 8.4751 -5.7114 41 1 -4.6219 7.0848 -6.7849 42 1 -3.7647 5.0468 -2.8978 43 1 -2.1207 3.2996 -2.1916 44 1 -1.3246 4.6356 -1.3274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187902281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:12 Heat of formation + Delta-G solvation = -147.920005 kcal Electronic energy + Delta-G solvation = -26966.840762 eV Core-core repulsion = 23042.643514 eV Total energy + Delta-G solvation = -3924.197248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06873 -39.87618 -39.13702 -36.54196 -36.07524 -34.17605 -33.53934 -31.47306 -30.87372 -30.07834 -27.52166 -27.30590 -25.78618 -24.55191 -23.14101 -22.80257 -21.31151 -20.05824 -19.33421 -18.05510 -17.86576 -17.20231 -16.90627 -16.56915 -15.97016 -15.59827 -15.50254 -15.16640 -14.67309 -14.51263 -14.27127 -13.86323 -13.54801 -13.33691 -13.20007 -13.07968 -12.90088 -12.82016 -12.20193 -12.14248 -11.86834 -11.54889 -11.36974 -11.22016 -11.16858 -11.09478 -10.99442 -10.70362 -10.64563 -10.44506 -10.31339 -9.84774 -9.65726 -9.42253 -9.00815 -8.85392 -8.50128 -7.85939 -6.22663 -4.29985 1.05891 1.30181 2.81947 2.99880 3.20939 3.23236 3.28252 3.32342 3.48584 3.62561 4.28869 4.49781 4.53798 4.59013 4.71057 4.79523 4.85580 4.92877 5.05030 5.09764 5.11640 5.16452 5.40345 5.47393 5.59209 5.71851 5.74193 5.78989 5.90116 6.00595 6.13598 6.18703 6.24878 6.28949 6.37055 6.41819 6.81835 6.91108 7.10862 7.11613 7.19144 7.39058 7.57176 7.68567 7.88380 8.10518 8.54655 8.82629 9.35557 10.84078 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.002679 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.311353 B =10450.768651 C =11184.050268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.509 6.509 16 C -0.122 4.122 17 H 0.117 0.883 18 C 0.074 3.926 19 O -0.309 6.309 20 C 0.096 3.904 21 C -0.108 4.108 22 C -0.177 4.177 23 C 0.093 3.907 24 O -0.319 6.319 25 C 0.028 3.972 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.064 4.064 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 11.694 -14.792 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.269 6.269 14 C 0.303 3.697 15 O -0.398 6.398 16 C -0.141 4.141 17 H 0.135 0.865 18 C -0.001 4.001 19 O -0.223 6.223 20 C 0.051 3.949 21 C -0.127 4.127 22 C -0.195 4.195 23 C 0.049 3.951 24 O -0.233 6.233 25 C -0.067 4.067 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.101 4.101 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.111 0.889 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.330 11.532 -14.309 22.131 hybrid contribution 0.803 -0.102 0.229 0.841 sum -11.528 11.430 -14.080 21.489 Atomic orbital electron populations 1.21860 0.98375 0.99086 1.00683 1.22026 0.92631 0.99331 1.03449 1.20728 0.95113 0.88804 0.78473 0.93442 1.21069 0.89580 1.39039 1.06265 0.91222 1.24888 0.99278 0.94731 0.95067 1.69895 1.35339 1.37764 1.09490 0.86233 0.83845 0.77919 0.78241 1.19444 1.20756 1.20703 1.86473 1.33814 1.62241 1.44363 1.22725 0.81163 0.77207 0.88629 1.90622 1.55392 1.58403 1.35418 1.21654 0.96801 0.98748 0.96943 0.86538 1.22969 0.98449 0.94059 0.84612 1.86059 1.23037 1.76783 1.36442 1.18649 0.83606 0.96185 0.96441 1.20352 0.96262 0.97478 0.98613 1.20982 0.92670 1.04336 1.01546 1.18779 0.83322 0.96950 0.96076 1.86076 1.23945 1.62666 1.50609 1.23020 1.02475 0.92428 0.88766 1.20104 0.95616 0.99328 0.98278 1.19653 0.92603 1.00434 0.98615 1.20417 0.95585 0.97691 0.96439 0.94754 0.92791 0.95032 0.93918 0.87273 0.92399 0.91029 0.85476 0.84820 0.84987 0.88395 0.92761 0.92761 0.84757 0.88919 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.57 37.15 0.32 -2.74 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.68 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.16 8.90 -34.44 -0.31 -14.47 16 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.60 11.29 55.43 0.63 -23.97 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 O -0.35 -7.90 9.68 -39.26 -0.38 -8.28 16 14 C 0.46 8.96 5.71 36.00 0.21 9.17 16 15 O -0.51 -11.04 12.94 -18.75 -0.24 -11.28 16 16 C -0.12 -1.81 2.86 -91.53 -0.26 -2.07 16 17 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 18 C 0.07 1.02 6.28 37.37 0.23 1.26 16 19 O -0.31 -4.24 10.27 -19.59 -0.20 -4.44 16 20 C 0.10 1.25 6.47 -39.21 -0.25 1.00 16 21 C -0.11 -1.20 9.93 -39.36 -0.39 -1.59 16 22 C -0.18 -1.76 9.03 -39.51 -0.36 -2.11 16 23 C 0.09 1.05 6.68 -39.30 -0.26 0.79 16 24 O -0.32 -3.32 10.50 -19.71 -0.21 -3.52 16 25 C 0.03 0.17 9.81 101.05 0.99 1.17 16 26 C -0.11 -1.37 9.60 -39.38 -0.38 -1.75 16 27 C -0.11 -1.44 5.75 -104.40 -0.60 -2.04 16 28 C -0.06 -0.87 4.66 -27.76 -0.13 -1.00 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 31 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.71 8.06 -51.93 -0.42 1.30 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.13 0.95 6.31 -52.48 -0.33 0.61 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 41 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 42 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.35 7.71 -51.93 -0.40 0.95 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -30.25 358.29 -7.79 -38.04 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.27 Total: 3.07 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.49 Total: -10.65 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.03 Total: -27.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.25 -7.79 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.875 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds