Wall clock time and date at job start Tue Mar 31 2020 13:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.09003 * 109.47155 * 55.00129 * 3 2 1 5 5 C 1.50703 * 109.46953 * 175.00054 * 3 2 1 6 6 H 1.08004 * 119.99935 * 120.00465 * 5 3 2 7 7 C 1.37875 * 120.00266 * 299.99697 * 5 3 2 8 8 N 1.31509 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00183 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47245 * 120.00044 * 9 7 5 12 12 H 1.48502 * 109.47221 * 240.00514 * 9 7 5 13 13 O 1.45201 * 109.47204 * 295.00104 * 3 2 1 14 14 C 1.34231 * 116.99858 * 89.99806 * 13 3 2 15 15 O 1.20822 * 119.99951 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99728 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.69701 * 60.00147 * 16 14 13 18 18 C 1.53405 * 109.70144 * 299.43477 * 16 14 13 19 19 O 1.42819 * 108.38698 * 175.54411 * 18 16 14 20 20 C 1.35952 * 117.87265 * 49.12011 * 19 18 16 21 21 C 1.39137 * 118.43746 * 162.88428 * 20 19 18 22 22 C 1.37942 * 120.29078 * 179.76118 * 21 20 19 23 23 C 1.38719 * 119.90369 * 359.97438 * 22 21 20 24 24 O 1.35989 * 120.06744 * 180.02562 * 23 22 21 25 25 C 1.42899 * 116.99776 * 0.02720 * 24 23 22 26 26 C 1.38529 * 119.86055 * 0.09173 * 23 22 21 27 27 C 1.38350 * 121.78296 * 342.81803 * 20 19 18 28 28 C 1.50869 * 121.42213 * 0.53902 * 27 20 19 29 29 H 1.09005 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 299.99801 * 1 2 3 31 31 H 1.08995 * 109.47729 * 60.00213 * 1 2 3 32 32 H 1.09004 * 109.47301 * 240.00199 * 2 1 3 33 33 H 1.09004 * 109.47716 * 119.99974 * 2 1 3 34 34 H 0.97006 * 120.00003 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.68577 * 295.27005 * 18 16 14 36 36 H 1.08997 * 109.68312 * 55.78389 * 18 16 14 37 37 H 1.08000 * 119.84869 * 359.74799 * 21 20 19 38 38 H 1.08003 * 120.04514 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.46732 * 179.97438 * 25 24 23 40 40 H 1.08993 * 109.47183 * 299.99410 * 25 24 23 41 41 H 1.08998 * 109.47511 * 59.99999 * 25 24 23 42 42 H 1.08003 * 119.86115 * 179.97438 * 26 23 22 43 43 H 1.09000 * 109.49002 * 222.01284 * 28 27 20 44 44 H 1.09004 * 109.43619 * 102.11207 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.5986 1.5473 0.1947 11 1 6.3990 1.6168 2.6101 12 1 6.4970 -0.5175 1.4628 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2559 15 8 -0.2190 2.7377 -0.2652 16 6 0.0068 3.4216 -2.5086 17 1 -0.0735 2.7001 -3.3217 18 6 1.0051 4.5220 -2.8904 19 8 0.5937 5.0920 -4.1336 20 6 -0.7070 5.4665 -4.2616 21 6 -1.0479 6.3348 -5.2940 22 6 -2.3570 6.7357 -5.4622 23 6 -3.3388 6.2714 -4.5991 24 8 -4.6305 6.6641 -4.7622 25 6 -4.9057 7.5562 -5.8440 26 6 -3.0004 5.4080 -3.5700 27 6 -1.6859 5.0071 -3.3987 28 6 -1.3559 4.0732 -2.2606 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0617 2.9495 35 1 1.0155 5.2921 -2.1190 36 1 2.0019 4.0935 -2.9945 37 1 -0.2841 6.6965 -5.9664 38 1 -2.6173 7.4094 -6.2651 39 1 -5.9705 7.7888 -5.8612 40 1 -4.3348 8.4751 -5.7114 41 1 -4.6219 7.0848 -6.7849 42 1 -3.7647 5.0468 -2.8978 43 1 -2.1207 3.2996 -2.1916 44 1 -1.3246 4.6356 -1.3274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187902281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:12 Heat of formation + Delta-G solvation = -164.072046 kcal Electronic energy + Delta-G solvation = -26967.541167 eV Core-core repulsion = 23042.643514 eV Total energy + Delta-G solvation = -3924.897653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17588 -41.23568 -40.14513 -37.82009 -37.41521 -35.57349 -35.27258 -33.36243 -31.92009 -30.93159 -29.34718 -28.05761 -26.83345 -25.92218 -24.91074 -23.69686 -22.72810 -21.60141 -20.77744 -19.12615 -18.97800 -18.65001 -18.33159 -17.87044 -17.27220 -17.04337 -16.61234 -16.38639 -16.10325 -15.54177 -15.45943 -15.13335 -14.84011 -14.58971 -14.38595 -14.26841 -14.10174 -13.92731 -13.69965 -13.38286 -13.29505 -13.10336 -12.87813 -12.82505 -12.68031 -12.53160 -12.18220 -12.13351 -12.07008 -11.76819 -11.67037 -11.45831 -11.35592 -11.18298 -10.82580 -10.53155 -9.89661 -8.75118 -8.27417 -6.43712 0.19034 0.40685 1.23877 1.42387 1.42875 1.56131 1.83441 2.25181 2.40474 2.43425 2.67678 3.02651 3.34450 3.45982 3.66266 3.76335 3.87981 3.96505 4.11753 4.25006 4.34890 4.36826 4.39180 4.43993 4.46027 4.51327 4.54322 4.63426 4.76051 4.78854 4.82841 4.86208 4.90513 4.99587 5.08199 5.20433 5.29618 5.34229 5.38296 5.51467 5.53074 5.66826 5.96633 6.11213 6.27119 6.50998 6.60700 6.93898 7.27521 8.79421 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.002679 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.311353 B =10450.768651 C =11184.050268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.273 1.273 13 O -0.358 6.358 14 C 0.460 3.540 15 O -0.533 6.533 16 C -0.110 4.110 17 H 0.131 0.869 18 C 0.078 3.922 19 O -0.312 6.312 20 C 0.071 3.929 21 C -0.107 4.107 22 C -0.168 4.168 23 C 0.092 3.908 24 O -0.336 6.336 25 C 0.017 3.983 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.270 0.730 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 12.710 -16.942 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.199 1.199 13 O -0.274 6.274 14 C 0.303 3.697 15 O -0.423 6.423 16 C -0.129 4.129 17 H 0.149 0.851 18 C 0.003 3.997 19 O -0.226 6.226 20 C 0.027 3.973 21 C -0.125 4.125 22 C -0.186 4.186 23 C 0.047 3.953 24 O -0.251 6.251 25 C -0.077 4.077 26 C -0.147 4.147 27 C -0.120 4.120 28 C -0.095 4.095 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.155 0.845 43 H 0.114 0.886 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.598 12.564 -16.481 24.253 hybrid contribution 0.721 -0.315 0.837 1.148 sum -11.877 12.249 -15.645 23.149 Atomic orbital electron populations 1.21718 0.96270 1.00635 1.00143 1.21879 0.94477 0.98174 1.02384 1.20409 0.94592 0.89270 0.78547 0.97288 1.21357 0.90475 1.39781 1.06808 0.91395 1.25778 1.04065 0.93977 0.94463 1.70015 1.37307 1.38004 1.09909 0.85189 0.77949 0.78236 0.78379 1.18683 1.20293 1.19864 1.86461 1.35530 1.62795 1.42657 1.23582 0.79835 0.76366 0.89877 1.90612 1.55742 1.59114 1.36854 1.21679 0.97683 0.99021 0.94536 0.85098 1.22886 0.98102 0.93656 0.85055 1.86053 1.23693 1.76964 1.35893 1.18932 0.83192 0.97566 0.97654 1.20645 0.97270 0.96572 0.98042 1.21313 0.91767 1.03878 1.01674 1.18916 0.84164 0.96446 0.95794 1.86065 1.23336 1.63439 1.52226 1.23355 1.04029 0.92256 0.88075 1.20206 0.95378 1.00052 0.99091 1.19536 0.93149 1.00821 0.98515 1.20336 0.94793 0.97854 0.96556 0.92087 0.94471 0.94349 0.93539 0.89573 0.92089 0.91047 0.85359 0.82929 0.81814 0.86559 0.91544 0.91479 0.84458 0.88560 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.57 71.98 0.62 -5.00 16 2 C -0.13 -6.50 5.49 30.59 0.17 -6.33 16 3 C 0.22 11.93 2.25 29.85 0.07 12.00 16 4 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 5 C -0.55 -30.31 8.90 25.60 0.23 -30.08 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.47 16 9 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 O -0.36 -16.41 9.68 -51.43 -0.50 -16.91 16 14 C 0.46 18.25 5.71 71.23 0.41 18.66 16 15 O -0.53 -23.87 12.94 21.98 0.28 -23.59 16 16 C -0.11 -3.25 2.86 -11.38 -0.03 -3.28 16 17 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 18 C 0.08 2.14 6.28 72.12 0.45 2.60 16 19 O -0.31 -8.24 10.27 -93.01 -0.96 -9.19 16 20 C 0.07 1.76 6.47 22.51 0.15 1.91 16 21 C -0.11 -2.11 9.93 22.42 0.22 -1.89 16 22 C -0.17 -2.85 9.03 22.31 0.20 -2.65 16 23 C 0.09 1.89 6.68 22.45 0.15 2.04 16 24 O -0.34 -6.28 10.50 -93.43 -0.98 -7.26 16 25 C 0.02 0.16 9.81 113.37 1.11 1.27 16 26 C -0.13 -2.98 9.60 22.40 0.22 -2.76 16 27 C -0.12 -2.99 5.75 -19.72 -0.11 -3.10 16 28 C -0.06 -1.58 4.66 29.93 0.14 -1.44 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.25 16 30 H 0.04 1.69 7.80 -2.39 -0.02 1.68 16 31 H 0.04 1.56 6.06 -2.39 -0.01 1.55 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 4.69 5.95 -2.38 -0.01 4.67 16 34 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.13 3.45 8.06 -2.39 -0.02 3.43 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.16 1.66 6.31 -2.91 -0.02 1.65 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 41 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 Total: -1.00 -66.10 358.29 5.55 -60.55 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.01 Total: 20.18 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 4.43 Total: -16.70 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.24 Total: -51.47 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -2.15 Total: -56.95 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.10 5.55 -60.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187902281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.526 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds