Wall clock time and date at job start Tue Mar 31 2020 13:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08996 * 109.46743 * 304.99993 * 3 2 1 5 5 C 1.50706 * 109.47026 * 184.99987 * 3 2 1 6 6 H 1.07995 * 120.00028 * 239.99639 * 5 3 2 7 7 C 1.37878 * 119.99767 * 59.99941 * 5 3 2 8 8 N 1.31510 * 120.00391 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99615 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47482 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47372 * 119.99784 * 9 7 5 12 12 H 1.48506 * 109.47053 * 239.99690 * 9 7 5 13 13 O 1.42893 * 109.47210 * 65.00042 * 3 2 1 14 14 C 1.34937 * 116.99903 * 269.99825 * 13 3 2 15 15 O 1.21643 * 119.99688 * 0.02562 * 14 13 3 16 16 C 1.41779 * 119.99839 * 179.97438 * 14 13 3 17 17 C 1.35099 * 119.99701 * 179.97438 * 16 14 13 18 18 C 1.46960 * 119.99758 * 180.02562 * 17 16 14 19 19 C 1.39968 * 120.09693 * 0.02562 * 18 17 16 20 20 C 1.37735 * 119.97441 * 179.97438 * 19 18 17 21 21 C 1.38871 * 120.17437 * 359.97438 * 20 19 18 22 22 O 1.35825 * 119.90202 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99836 * 0.02562 * 22 21 20 24 24 C 1.39444 * 120.19631 * 0.02562 * 21 20 19 25 25 O 1.35994 * 119.98987 * 179.97438 * 24 21 20 26 26 C 1.42899 * 117.00072 * 179.97438 * 25 24 21 27 27 C 1.38081 * 120.02164 * 359.97438 * 24 21 20 28 28 H 1.08995 * 109.47044 * 60.00060 * 1 2 3 29 29 H 1.09003 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47178 * 300.00060 * 1 2 3 31 31 H 1.09003 * 109.46924 * 239.99452 * 2 1 3 32 32 H 1.09006 * 109.47113 * 119.99487 * 2 1 3 33 33 H 0.96996 * 120.00342 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.00249 * 0.02562 * 16 14 13 35 35 H 1.07998 * 120.00049 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.01947 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.91465 * 179.71951 * 20 19 18 38 38 H 1.08996 * 109.47146 * 299.99549 * 23 22 21 39 39 H 1.09000 * 109.46707 * 60.00153 * 23 22 21 40 40 H 1.08997 * 109.46812 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47116 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.46892 * 299.99855 * 26 25 24 43 43 H 1.08995 * 109.47496 * 60.00015 * 26 25 24 44 44 H 1.08002 * 120.08879 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8799 -1.3811 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6092 13 8 1.6620 2.0814 1.2210 14 6 0.4726 2.7185 1.2363 15 8 -0.2240 2.7301 0.2391 16 6 0.0344 3.3735 2.4149 17 6 -1.1561 4.0118 2.4301 18 6 -1.6101 4.6912 3.6516 19 6 -0.8103 4.6787 4.8002 20 6 -1.2380 5.3167 5.9435 21 6 -2.4614 5.9737 5.9602 22 8 -2.8779 6.6006 7.0908 23 6 -2.0073 6.5436 8.2225 24 6 -3.2639 5.9907 4.8199 25 8 -4.4614 6.6349 4.8411 26 6 -5.2314 6.6126 3.6375 27 6 -2.8431 5.3537 3.6693 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0620 -2.9494 34 1 0.6527 3.3628 3.3003 35 1 -1.7743 4.0229 1.5445 36 1 0.1418 4.1689 4.7902 37 1 -0.6222 5.3025 6.8306 38 1 -1.8479 5.5034 8.5062 39 1 -1.0513 7.0017 7.9688 40 1 -2.4589 7.0820 9.0557 41 1 -6.1605 7.1619 3.7903 42 1 -4.6622 7.0789 2.8333 43 1 -5.4588 5.5806 3.3706 44 1 -3.4640 5.3659 2.7857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187999108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:51 Heat of formation + Delta-G solvation = -120.406093 kcal Electronic energy + Delta-G solvation = -26016.604585 eV Core-core repulsion = 22093.600430 eV Total energy + Delta-G solvation = -3923.004155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83976 -39.74089 -38.75824 -37.58958 -35.99728 -33.52218 -33.34343 -31.32543 -30.75938 -29.91613 -27.66123 -27.54291 -27.05574 -24.59413 -23.11948 -22.47691 -21.63065 -19.96837 -19.11635 -18.72518 -17.54639 -17.16697 -16.72591 -16.49716 -16.37317 -15.54306 -15.45909 -15.24409 -15.05426 -14.80261 -14.58500 -14.46482 -13.50350 -13.13671 -13.04283 -12.83401 -12.61990 -12.45872 -12.23409 -12.01703 -11.67749 -11.56676 -11.49105 -11.45578 -11.35638 -11.17199 -11.11986 -10.95154 -10.62223 -10.26030 -9.85691 -9.78699 -9.63673 -9.31389 -8.86600 -8.73299 -8.41905 -7.83199 -6.15736 -4.22538 0.38728 1.07212 1.88941 2.93304 2.97217 3.24650 3.31548 3.36466 3.41836 3.79858 3.84108 4.34627 4.43661 4.61578 4.66996 4.78900 4.83846 4.87862 4.90738 5.00703 5.02845 5.16239 5.16519 5.22372 5.23812 5.35105 5.77742 5.81084 5.87263 6.00800 6.25974 6.30713 6.32468 6.43511 6.50440 6.54117 6.73121 6.91510 7.00411 7.21039 7.25746 7.29179 7.65140 7.78010 7.98367 8.19810 8.67697 8.94503 9.42906 10.91148 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002337 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.498493 B =11979.085096 C =12761.865864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.216 3.784 4 H 0.046 0.954 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.345 6.345 14 C 0.484 3.516 15 O -0.520 6.520 16 C -0.177 4.177 17 C -0.025 4.025 18 C -0.066 4.066 19 C -0.093 4.093 20 C -0.175 4.175 21 C 0.107 3.893 22 O -0.306 6.306 23 C 0.025 3.975 24 C 0.095 3.905 25 O -0.308 6.308 26 C 0.024 3.976 27 C -0.150 4.150 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 11.289 17.105 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.163 3.837 4 H 0.063 0.937 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.261 6.261 14 C 0.331 3.669 15 O -0.413 6.413 16 C -0.196 4.196 17 C -0.043 4.043 18 C -0.066 4.066 19 C -0.111 4.111 20 C -0.193 4.193 21 C 0.061 3.939 22 O -0.219 6.219 23 C -0.070 4.070 24 C 0.050 3.950 25 O -0.222 6.222 26 C -0.071 4.071 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.090 11.379 16.813 24.712 hybrid contribution 1.143 -0.321 -0.428 1.262 sum -12.947 11.057 16.385 23.630 Atomic orbital electron populations 1.21859 0.98438 0.98916 1.00735 1.22037 0.92587 0.99548 1.03270 1.20262 0.95068 0.88896 0.79518 0.93660 1.21097 0.89709 1.38741 1.06155 0.91346 1.24892 0.99169 0.94834 0.95120 1.69900 1.35234 1.37942 1.09489 0.86252 0.84046 0.77847 0.78186 1.19501 1.20743 1.20794 1.86190 1.33982 1.62392 1.43551 1.19808 0.81287 0.77608 0.88221 1.90816 1.55351 1.59024 1.36084 1.21549 0.98119 1.01534 0.98392 1.22325 0.94830 0.91256 0.95912 1.18693 0.94391 0.99709 0.93842 1.21241 0.99930 0.98496 0.91466 1.21015 0.95683 1.02273 1.00375 1.18453 0.92965 0.96619 0.85818 1.86129 1.45906 1.70862 1.19031 1.23104 0.94682 1.02217 0.87021 1.18063 0.87000 0.97660 0.92278 1.86164 1.28224 1.70865 1.36907 1.23103 0.95456 1.02282 0.86252 1.21263 0.97675 1.00645 0.97262 0.92813 0.94904 0.94961 0.87461 0.94068 0.92506 0.84663 0.84445 0.84427 0.84308 0.92517 0.92495 0.88171 0.88143 0.92492 0.92497 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.55 37.16 0.32 -2.85 16 2 C -0.14 -3.44 5.48 -26.73 -0.15 -3.58 16 3 C 0.22 5.80 2.22 -27.88 -0.06 5.74 16 4 H 0.05 1.35 7.11 -51.93 -0.37 0.98 16 5 C -0.52 -14.64 8.89 -34.44 -0.31 -14.95 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.24 11.29 55.43 0.63 -24.62 16 9 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 O -0.35 -8.31 9.68 -41.14 -0.40 -8.71 16 14 C 0.48 10.17 6.11 32.08 0.20 10.36 16 15 O -0.52 -11.99 13.23 -19.37 -0.26 -12.25 16 16 C -0.18 -2.78 9.33 -39.35 -0.37 -3.15 16 17 C -0.02 -0.33 9.41 -37.17 -0.35 -0.68 16 18 C -0.07 -0.77 5.87 -105.06 -0.62 -1.39 16 19 C -0.09 -0.99 9.40 -39.12 -0.37 -1.36 16 20 C -0.17 -1.69 9.01 -39.53 -0.36 -2.05 16 21 C 0.11 1.20 6.71 -38.90 -0.26 0.93 16 22 O -0.31 -3.25 10.27 -33.87 -0.35 -3.60 16 23 C 0.02 0.15 9.81 101.05 0.99 1.14 16 24 C 0.10 1.10 6.69 -39.19 -0.26 0.83 16 25 O -0.31 -3.41 10.27 -34.40 -0.35 -3.77 16 26 C 0.02 0.17 9.81 101.05 0.99 1.16 16 27 C -0.15 -1.61 8.78 -38.99 -0.34 -1.96 16 28 H 0.05 1.25 7.75 -51.93 -0.40 0.85 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.69 6.05 -51.93 -0.31 0.37 16 31 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.14 1.80 6.06 -52.49 -0.32 1.48 16 35 H 0.14 1.86 7.45 -52.49 -0.39 1.47 16 36 H 0.14 1.29 6.15 -52.49 -0.32 0.96 16 37 H 0.14 0.97 6.27 -52.49 -0.33 0.64 16 38 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 39 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 43 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 44 H 0.14 1.24 6.28 -52.49 -0.33 0.91 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -33.11 365.35 -7.19 -40.30 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.91 Total: 1.20 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.04 Total: -10.17 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.63 Total: -24.62 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.36 Total: -28.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.11 -7.19 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187999108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.105 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds