Wall clock time and date at job start Tue Mar 31 2020 13:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08996 * 109.46743 * 304.99993 * 3 2 1 5 5 C 1.50706 * 109.47026 * 184.99987 * 3 2 1 6 6 H 1.07995 * 120.00028 * 239.99639 * 5 3 2 7 7 C 1.37878 * 119.99767 * 59.99941 * 5 3 2 8 8 N 1.31510 * 120.00391 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99615 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47482 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47372 * 119.99784 * 9 7 5 12 12 H 1.48506 * 109.47053 * 239.99690 * 9 7 5 13 13 O 1.42893 * 109.47210 * 65.00042 * 3 2 1 14 14 C 1.34937 * 116.99903 * 269.99825 * 13 3 2 15 15 O 1.21643 * 119.99688 * 0.02562 * 14 13 3 16 16 C 1.41779 * 119.99839 * 179.97438 * 14 13 3 17 17 C 1.35099 * 119.99701 * 179.97438 * 16 14 13 18 18 C 1.46960 * 119.99758 * 180.02562 * 17 16 14 19 19 C 1.39968 * 120.09693 * 0.02562 * 18 17 16 20 20 C 1.37735 * 119.97441 * 179.97438 * 19 18 17 21 21 C 1.38871 * 120.17437 * 359.97438 * 20 19 18 22 22 O 1.35825 * 119.90202 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99836 * 0.02562 * 22 21 20 24 24 C 1.39444 * 120.19631 * 0.02562 * 21 20 19 25 25 O 1.35994 * 119.98987 * 179.97438 * 24 21 20 26 26 C 1.42899 * 117.00072 * 179.97438 * 25 24 21 27 27 C 1.38081 * 120.02164 * 359.97438 * 24 21 20 28 28 H 1.08995 * 109.47044 * 60.00060 * 1 2 3 29 29 H 1.09003 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47178 * 300.00060 * 1 2 3 31 31 H 1.09003 * 109.46924 * 239.99452 * 2 1 3 32 32 H 1.09006 * 109.47113 * 119.99487 * 2 1 3 33 33 H 0.96996 * 120.00342 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.00249 * 0.02562 * 16 14 13 35 35 H 1.07998 * 120.00049 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.01947 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.91465 * 179.71951 * 20 19 18 38 38 H 1.08996 * 109.47146 * 299.99549 * 23 22 21 39 39 H 1.09000 * 109.46707 * 60.00153 * 23 22 21 40 40 H 1.08997 * 109.46812 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47116 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.46892 * 299.99855 * 26 25 24 43 43 H 1.08995 * 109.47496 * 60.00015 * 26 25 24 44 44 H 1.08002 * 120.08879 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8799 -1.3811 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6092 13 8 1.6620 2.0814 1.2210 14 6 0.4726 2.7185 1.2363 15 8 -0.2240 2.7301 0.2391 16 6 0.0344 3.3735 2.4149 17 6 -1.1561 4.0118 2.4301 18 6 -1.6101 4.6912 3.6516 19 6 -0.8103 4.6787 4.8002 20 6 -1.2380 5.3167 5.9435 21 6 -2.4614 5.9737 5.9602 22 8 -2.8779 6.6006 7.0908 23 6 -2.0073 6.5436 8.2225 24 6 -3.2639 5.9907 4.8199 25 8 -4.4614 6.6349 4.8411 26 6 -5.2314 6.6126 3.6375 27 6 -2.8431 5.3537 3.6693 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0620 -2.9494 34 1 0.6527 3.3628 3.3003 35 1 -1.7743 4.0229 1.5445 36 1 0.1418 4.1689 4.7902 37 1 -0.6222 5.3025 6.8306 38 1 -1.8479 5.5034 8.5062 39 1 -1.0513 7.0017 7.9688 40 1 -2.4589 7.0820 9.0557 41 1 -6.1605 7.1619 3.7903 42 1 -4.6622 7.0789 2.8333 43 1 -5.4588 5.5806 3.3706 44 1 -3.4640 5.3659 2.7857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187999108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:50 Heat of formation + Delta-G solvation = -139.054723 kcal Electronic energy + Delta-G solvation = -26017.413250 eV Core-core repulsion = 22093.600430 eV Total energy + Delta-G solvation = -3923.812820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67395 -41.40006 -39.47857 -38.55377 -37.69005 -35.45834 -34.55899 -33.30242 -31.56177 -30.82315 -29.36308 -28.11648 -28.08544 -25.94069 -24.86984 -23.38696 -22.79390 -21.71328 -20.52055 -19.54466 -18.99887 -18.62536 -17.88797 -17.77048 -17.13246 -17.06698 -16.95851 -16.32532 -16.16459 -15.78946 -15.62381 -15.42694 -14.98933 -14.72593 -14.24563 -14.02044 -13.76662 -13.54683 -13.33947 -13.28164 -13.19660 -13.09818 -12.82622 -12.80972 -12.54474 -12.43847 -12.25244 -12.12264 -12.09240 -11.99990 -11.75113 -11.44419 -11.29334 -10.84437 -10.76907 -10.49525 -9.70768 -8.71260 -8.25792 -6.42498 -0.67310 0.27983 0.80480 1.42217 1.42734 1.56739 2.12836 2.19316 2.28695 2.30727 2.50236 2.74157 3.03597 3.62039 3.66912 3.92861 4.04635 4.16010 4.19241 4.29354 4.38777 4.39067 4.40095 4.41479 4.43385 4.43658 4.57608 4.61182 4.74209 4.77609 4.85991 4.86533 4.96052 5.08588 5.18201 5.23890 5.26153 5.42958 5.52532 5.52975 5.54881 5.69677 6.01294 6.04732 6.16985 6.53044 6.63112 7.05186 7.30275 8.81317 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002337 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.498493 B =11979.085096 C =12761.865864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.271 1.271 12 H -0.276 1.276 13 O -0.356 6.356 14 C 0.481 3.519 15 O -0.552 6.552 16 C -0.211 4.211 17 C 0.020 3.980 18 C -0.091 4.091 19 C -0.088 4.088 20 C -0.174 4.174 21 C 0.105 3.895 22 O -0.326 6.326 23 C 0.014 3.986 24 C 0.077 3.923 25 O -0.327 6.327 26 C 0.015 3.985 27 C -0.143 4.143 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.270 0.730 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 11.889 19.118 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.166 3.834 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.196 1.196 12 H -0.202 1.202 13 O -0.273 6.273 14 C 0.331 3.669 15 O -0.447 6.447 16 C -0.230 4.230 17 C 0.002 3.998 18 C -0.091 4.091 19 C -0.106 4.106 20 C -0.192 4.192 21 C 0.059 3.941 22 O -0.239 6.239 23 C -0.080 4.080 24 C 0.031 3.969 25 O -0.241 6.241 26 C -0.079 4.079 27 C -0.161 4.161 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.058 11.988 18.847 26.393 hybrid contribution 0.917 -0.341 -0.910 1.336 sum -13.141 11.648 17.937 25.102 Atomic orbital electron populations 1.21705 0.96294 1.00502 1.00101 1.21886 0.94478 0.98296 1.02211 1.19948 0.94594 0.89420 0.79393 0.97794 1.21383 0.90569 1.39792 1.06833 0.91705 1.25820 1.04260 0.93926 0.94392 1.70023 1.37345 1.38019 1.09891 0.85165 0.77740 0.78316 0.78359 1.18776 1.19646 1.20181 1.86166 1.35925 1.63191 1.41996 1.20622 0.79899 0.76851 0.89499 1.90794 1.55834 1.60440 1.37646 1.21383 0.99982 1.04308 0.97314 1.22433 0.93120 0.87957 0.96330 1.18632 0.95487 1.01407 0.93586 1.21479 1.00103 0.97788 0.91217 1.21286 0.95453 1.01396 1.01062 1.18782 0.93225 0.96050 0.86060 1.86113 1.47419 1.70663 1.19754 1.23428 0.94910 1.03553 0.86096 1.18291 0.87573 0.98273 0.92744 1.86141 1.28282 1.70928 1.38795 1.23367 0.95889 1.03253 0.85371 1.21411 0.97347 0.99621 0.97762 0.94549 0.92066 0.94442 0.89700 0.93680 0.92090 0.82277 0.84787 0.83110 0.81519 0.91266 0.91298 0.86398 0.86228 0.91804 0.91743 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.55 71.98 0.62 -5.19 16 2 C -0.13 -6.75 5.48 30.59 0.17 -6.59 16 3 C 0.22 12.33 2.22 29.85 0.07 12.40 16 4 H 0.00 0.27 7.11 -2.39 -0.02 0.25 16 5 C -0.55 -31.74 8.89 25.60 0.23 -31.51 16 6 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.91 -53.12 11.29 21.45 0.24 -52.88 16 9 Si 0.98 43.40 29.54 68.60 2.03 45.43 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 O -0.36 -17.68 9.68 -58.53 -0.57 -18.25 16 14 C 0.48 20.75 6.11 68.70 0.42 21.17 16 15 O -0.55 -26.46 13.23 19.37 0.26 -26.20 16 16 C -0.21 -6.57 9.33 22.42 0.21 -6.36 16 17 C 0.02 0.53 9.41 23.83 0.22 0.75 16 18 C -0.09 -1.98 5.87 -20.15 -0.12 -2.10 16 19 C -0.09 -1.66 9.40 22.57 0.21 -1.45 16 20 C -0.17 -2.90 9.01 22.30 0.20 -2.70 16 21 C 0.11 2.14 6.71 22.71 0.15 2.29 16 22 O -0.33 -6.31 10.27 -77.55 -0.80 -7.11 16 23 C 0.01 0.14 9.81 113.37 1.11 1.25 16 24 C 0.08 1.65 6.69 22.52 0.15 1.80 16 25 O -0.33 -6.86 10.27 -79.46 -0.82 -7.68 16 26 C 0.02 0.19 9.81 113.37 1.11 1.31 16 27 C -0.14 -2.86 8.78 22.66 0.20 -2.66 16 28 H 0.04 1.73 7.75 -2.39 -0.02 1.71 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.61 6.05 -2.39 -0.01 1.60 16 31 H 0.08 4.77 5.95 -2.39 -0.01 4.76 16 32 H 0.04 2.23 8.14 -2.38 -0.02 2.22 16 33 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.16 4.04 6.06 -2.91 -0.02 4.02 16 35 H 0.13 3.58 7.45 -2.91 -0.02 3.56 16 36 H 0.15 2.42 6.15 -2.91 -0.02 2.40 16 37 H 0.17 1.74 6.27 -2.91 -0.02 1.73 16 38 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 39 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 43 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 44 H 0.16 2.49 6.28 -2.91 -0.02 2.47 16 Total: -1.00 -73.75 365.35 6.76 -66.98 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.02 Total: 15.95 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.40 Total: -16.25 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.24 Total: -52.88 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.92 Total: -59.23 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -73.75 6.76 -66.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187999108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.072 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds