Wall clock time and date at job start Tue Mar 31 2020 13:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 H 1.08996 * 109.47299 * 304.78275 * 3 2 1 5 5 C 1.50696 * 109.47222 * 184.77640 * 3 2 1 6 6 H 1.07995 * 120.00580 * 245.45576 * 5 3 2 7 7 C 1.37885 * 119.99714 * 65.45424 * 5 3 2 8 8 N 1.31510 * 120.00155 * 9.49098 * 7 5 3 9 9 Si 1.86799 * 119.99758 * 189.48763 * 7 5 3 10 10 H 1.48500 * 109.47016 * 84.99883 * 9 7 5 11 11 H 1.48504 * 109.47220 * 204.99449 * 9 7 5 12 12 H 1.48500 * 109.47335 * 324.99684 * 9 7 5 13 13 O 1.45202 * 109.46834 * 64.78066 * 3 2 1 14 14 C 1.34230 * 116.99778 * 270.00025 * 13 3 2 15 15 O 1.20826 * 120.00304 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99711 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.69645 * 300.55181 * 16 14 13 18 18 C 1.53408 * 109.72810 * 61.12240 * 16 14 13 19 19 O 1.42832 * 108.36594 * 184.41839 * 18 16 14 20 20 C 1.35855 * 117.85252 * 310.69428 * 19 18 16 21 21 C 1.39057 * 118.45163 * 197.23981 * 20 19 18 22 22 C 1.38457 * 120.17569 * 180.41934 * 21 20 19 23 23 O 1.35892 * 120.07947 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99903 * 180.02562 * 23 22 21 25 25 C 1.38794 * 119.83555 * 0.04038 * 22 21 20 26 26 C 1.38011 * 119.92730 * 359.90541 * 25 22 21 27 27 C 1.38420 * 121.79462 * 17.52240 * 20 19 18 28 28 C 1.50789 * 121.37731 * 359.18258 * 27 20 19 29 29 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46819 * 299.99784 * 1 2 3 31 31 H 1.09003 * 109.47285 * 59.99824 * 1 2 3 32 32 H 1.09002 * 109.47325 * 240.00108 * 2 1 3 33 33 H 1.09003 * 109.47285 * 120.00176 * 2 1 3 34 34 H 0.97000 * 119.99971 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.68586 * 304.13217 * 18 16 14 36 36 H 1.09005 * 109.68119 * 64.69117 * 18 16 14 37 37 H 1.08002 * 119.91176 * 0.44275 * 21 20 19 38 38 H 1.09000 * 109.47174 * 59.99675 * 24 23 22 39 39 H 1.09003 * 109.46928 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.47070 * 300.00016 * 24 23 22 41 41 H 1.08002 * 120.03617 * 179.97438 * 25 22 21 42 42 H 1.08000 * 119.79710 * 180.02562 * 26 25 22 43 43 H 1.08999 * 109.43537 * 138.06071 * 28 27 20 44 44 H 1.09004 * 109.43425 * 257.96742 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 3.5423 1.4441 -0.1183 6 1 4.1479 1.8094 0.6978 7 6 4.1437 0.9791 -1.2687 8 7 3.4144 0.7102 -2.3295 9 14 5.9945 0.7312 -1.3203 10 1 6.3299 -0.6081 -0.7735 11 1 6.4675 0.8250 -2.7249 12 1 6.6573 1.7796 -0.5037 13 8 1.6514 2.0932 1.2385 14 6 0.4682 2.7269 1.2487 15 8 -0.2198 2.7380 0.2555 16 6 -0.0021 3.4246 2.4989 17 1 -0.0760 2.7060 3.3149 18 6 0.9872 4.5349 2.8756 19 8 0.5708 5.1067 4.1165 20 6 -0.7312 5.4741 4.2409 21 6 -1.0786 6.3454 5.2674 22 6 -2.3965 6.7363 5.4323 23 8 -2.7337 7.5883 6.4359 24 6 -4.1124 7.9477 6.5460 25 6 -3.3724 6.2557 4.5704 26 6 -3.0260 5.3919 3.5513 27 6 -1.7078 5.0007 3.3817 28 6 -1.3703 4.0640 2.2492 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8376 0.3834 -3.1388 35 1 1.9873 4.1148 2.9823 36 1 0.9912 5.3016 2.1008 37 1 -0.3182 6.7184 5.9376 38 1 -4.7097 7.0509 6.7100 39 1 -4.2439 8.6309 7.3851 40 1 -4.4351 8.4360 5.6264 41 1 -4.4015 6.5582 4.6963 42 1 -3.7870 5.0195 2.8815 43 1 -2.1289 3.2840 2.1854 44 1 -1.3438 4.6216 1.3130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188074617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:22 Heat of formation + Delta-G solvation = -149.764361 kcal Electronic energy + Delta-G solvation = -26937.085107 eV Core-core repulsion = 23012.807882 eV Total energy + Delta-G solvation = -3924.277225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09194 -39.90712 -39.18439 -36.66341 -36.07024 -34.07409 -33.47268 -31.54113 -30.68598 -30.34990 -27.73026 -27.28580 -25.63685 -24.50453 -23.14015 -22.82999 -21.35014 -20.06422 -19.32377 -18.73007 -17.47741 -16.97738 -16.58449 -16.52780 -16.03157 -15.71224 -15.47564 -15.22933 -14.95691 -14.62449 -14.32616 -13.97016 -13.66152 -13.38252 -13.17244 -13.03024 -12.86966 -12.63101 -12.25531 -12.09218 -11.67728 -11.63316 -11.37566 -11.29275 -11.26688 -11.00628 -10.98987 -10.72176 -10.70042 -10.59151 -10.31015 -9.93034 -9.67519 -9.43656 -8.89968 -8.63971 -8.50523 -8.12976 -6.24597 -4.28651 1.19280 1.22687 2.70286 2.84513 3.23040 3.27958 3.30256 3.40224 3.48692 3.66464 4.29658 4.47919 4.56601 4.63405 4.77794 4.83491 4.83792 4.88534 5.02157 5.08706 5.09938 5.15178 5.38092 5.47593 5.57989 5.65484 5.78020 5.89506 6.00771 6.03952 6.10578 6.12110 6.18657 6.27804 6.34248 6.36912 6.77236 6.88191 7.06246 7.10632 7.12619 7.32204 7.52175 7.62466 7.81369 8.07095 8.54434 8.83782 9.35706 10.84330 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.002647 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.695695 B =10577.464041 C =11287.823455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.055 0.945 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.461 3.539 15 O -0.508 6.508 16 C -0.123 4.123 17 H 0.116 0.884 18 C 0.074 3.926 19 O -0.306 6.306 20 C 0.170 3.830 21 C -0.184 4.184 22 C 0.154 3.846 23 O -0.316 6.316 24 C 0.028 3.972 25 C -0.238 4.238 26 C -0.043 4.043 27 C -0.188 4.188 28 C -0.059 4.059 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 10.471 14.122 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.303 3.697 15 O -0.398 6.398 16 C -0.142 4.142 17 H 0.134 0.866 18 C -0.001 4.001 19 O -0.219 6.219 20 C 0.124 3.876 21 C -0.203 4.203 22 C 0.109 3.891 23 O -0.230 6.230 24 C -0.067 4.067 25 C -0.257 4.257 26 C -0.061 4.061 27 C -0.189 4.189 28 C -0.096 4.096 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.426 10.481 13.874 21.968 hybrid contribution 0.448 -0.430 -0.546 0.827 sum -12.977 10.051 13.328 21.144 Atomic orbital electron populations 1.21867 0.98085 0.99209 1.00961 1.21928 0.92964 0.99411 1.02352 1.20716 0.95184 0.88526 0.78854 0.92762 1.20973 0.89435 1.44002 1.01993 0.91257 1.24897 0.99137 0.95091 0.94602 1.69982 1.36085 1.43841 1.02237 0.86359 0.83986 0.78956 0.77285 1.20219 1.21070 1.19618 1.86471 1.33818 1.62215 1.44401 1.22740 0.81139 0.77234 0.88632 1.90623 1.55602 1.58404 1.35149 1.21662 0.96956 0.98635 0.96952 0.86591 1.23027 0.98568 0.94072 0.84396 1.86047 1.22819 1.76159 1.36851 1.18310 0.83413 0.92106 0.93737 1.19569 0.94724 1.03321 1.02704 1.18512 0.92885 0.90015 0.87739 1.86051 1.28011 1.60608 1.48292 1.23062 0.80318 1.00550 1.02740 1.21069 0.99178 1.05538 0.99922 1.20655 0.94869 0.94652 0.95908 1.19769 0.93718 1.04425 1.00959 1.20314 0.95133 0.97547 0.96569 0.94676 0.94768 0.92603 0.89205 0.93571 0.92340 0.85302 0.90777 0.84367 0.92554 0.88256 0.92560 0.85361 0.85276 0.89384 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.15 0.32 -2.70 16 2 C -0.13 -3.05 5.54 -26.73 -0.15 -3.20 16 3 C 0.22 5.61 2.12 -27.89 -0.06 5.55 16 4 H 0.05 1.55 7.10 -51.93 -0.37 1.19 16 5 C -0.53 -14.29 8.82 -34.44 -0.30 -14.59 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C 0.07 1.77 5.16 -17.82 -0.09 1.68 16 8 N -0.88 -24.75 12.16 55.43 0.67 -24.08 16 9 Si 0.91 20.68 29.55 -169.99 -5.02 15.66 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.35 -7.87 9.70 -39.26 -0.38 -8.25 16 14 C 0.46 8.92 5.70 36.00 0.21 9.13 16 15 O -0.51 -10.99 12.93 -18.75 -0.24 -11.23 16 16 C -0.12 -1.81 2.86 -91.53 -0.26 -2.07 16 17 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 18 C 0.07 1.03 6.29 37.37 0.23 1.26 16 19 O -0.31 -4.26 10.27 -19.29 -0.20 -4.46 16 20 C 0.17 2.28 6.47 -39.21 -0.25 2.02 16 21 C -0.18 -2.30 9.87 -39.20 -0.39 -2.68 16 22 C 0.15 1.75 6.68 -39.30 -0.26 1.48 16 23 O -0.32 -3.25 10.50 -19.40 -0.20 -3.45 16 24 C 0.03 0.17 9.81 101.05 0.99 1.16 16 25 C -0.24 -2.39 9.04 -39.46 -0.36 -2.75 16 26 C -0.04 -0.46 9.66 -39.55 -0.38 -0.84 16 27 C -0.19 -2.36 5.75 -104.40 -0.60 -2.96 16 28 C -0.06 -0.78 4.66 -27.81 -0.13 -0.91 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 31 H 0.05 1.23 7.78 -51.93 -0.40 0.83 16 32 H 0.09 2.31 6.81 -51.93 -0.35 1.96 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 35 H 0.13 1.74 8.07 -51.93 -0.42 1.32 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 41 H 0.13 0.96 6.31 -52.49 -0.33 0.62 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.28 7.69 -51.93 -0.40 0.88 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -30.37 359.67 -7.75 -38.13 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.31 Total: 2.70 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.49 Total: -10.42 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.67 Total: -24.08 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.02 Total: -27.40 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.37 -7.75 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188074617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.639 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds