Wall clock time and date at job start Tue Mar 31 2020 13:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 H 1.08996 * 109.47299 * 304.78275 * 3 2 1 5 5 C 1.50696 * 109.47222 * 184.77640 * 3 2 1 6 6 H 1.07995 * 120.00580 * 245.45576 * 5 3 2 7 7 C 1.37885 * 119.99714 * 65.45424 * 5 3 2 8 8 N 1.31510 * 120.00155 * 9.49098 * 7 5 3 9 9 Si 1.86799 * 119.99758 * 189.48763 * 7 5 3 10 10 H 1.48500 * 109.47016 * 84.99883 * 9 7 5 11 11 H 1.48504 * 109.47220 * 204.99449 * 9 7 5 12 12 H 1.48500 * 109.47335 * 324.99684 * 9 7 5 13 13 O 1.45202 * 109.46834 * 64.78066 * 3 2 1 14 14 C 1.34230 * 116.99778 * 270.00025 * 13 3 2 15 15 O 1.20826 * 120.00304 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99711 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.69645 * 300.55181 * 16 14 13 18 18 C 1.53408 * 109.72810 * 61.12240 * 16 14 13 19 19 O 1.42832 * 108.36594 * 184.41839 * 18 16 14 20 20 C 1.35855 * 117.85252 * 310.69428 * 19 18 16 21 21 C 1.39057 * 118.45163 * 197.23981 * 20 19 18 22 22 C 1.38457 * 120.17569 * 180.41934 * 21 20 19 23 23 O 1.35892 * 120.07947 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99903 * 180.02562 * 23 22 21 25 25 C 1.38794 * 119.83555 * 0.04038 * 22 21 20 26 26 C 1.38011 * 119.92730 * 359.90541 * 25 22 21 27 27 C 1.38420 * 121.79462 * 17.52240 * 20 19 18 28 28 C 1.50789 * 121.37731 * 359.18258 * 27 20 19 29 29 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46819 * 299.99784 * 1 2 3 31 31 H 1.09003 * 109.47285 * 59.99824 * 1 2 3 32 32 H 1.09002 * 109.47325 * 240.00108 * 2 1 3 33 33 H 1.09003 * 109.47285 * 120.00176 * 2 1 3 34 34 H 0.97000 * 119.99971 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.68586 * 304.13217 * 18 16 14 36 36 H 1.09005 * 109.68119 * 64.69117 * 18 16 14 37 37 H 1.08002 * 119.91176 * 0.44275 * 21 20 19 38 38 H 1.09000 * 109.47174 * 59.99675 * 24 23 22 39 39 H 1.09003 * 109.46928 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.47070 * 300.00016 * 24 23 22 41 41 H 1.08002 * 120.03617 * 179.97438 * 25 22 21 42 42 H 1.08000 * 119.79710 * 180.02562 * 26 25 22 43 43 H 1.08999 * 109.43537 * 138.06071 * 28 27 20 44 44 H 1.09004 * 109.43425 * 257.96742 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9805 -0.8440 5 6 3.5423 1.4441 -0.1183 6 1 4.1479 1.8094 0.6978 7 6 4.1437 0.9791 -1.2687 8 7 3.4144 0.7102 -2.3295 9 14 5.9945 0.7312 -1.3203 10 1 6.3299 -0.6081 -0.7735 11 1 6.4675 0.8250 -2.7249 12 1 6.6573 1.7796 -0.5037 13 8 1.6514 2.0932 1.2385 14 6 0.4682 2.7269 1.2487 15 8 -0.2198 2.7380 0.2555 16 6 -0.0021 3.4246 2.4989 17 1 -0.0760 2.7060 3.3149 18 6 0.9872 4.5349 2.8756 19 8 0.5708 5.1067 4.1165 20 6 -0.7312 5.4741 4.2409 21 6 -1.0786 6.3454 5.2674 22 6 -2.3965 6.7363 5.4323 23 8 -2.7337 7.5883 6.4359 24 6 -4.1124 7.9477 6.5460 25 6 -3.3724 6.2557 4.5704 26 6 -3.0260 5.3919 3.5513 27 6 -1.7078 5.0007 3.3817 28 6 -1.3703 4.0640 2.2492 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8376 0.3834 -3.1388 35 1 1.9873 4.1148 2.9823 36 1 0.9912 5.3016 2.1008 37 1 -0.3182 6.7184 5.9376 38 1 -4.7097 7.0509 6.7100 39 1 -4.2439 8.6309 7.3851 40 1 -4.4351 8.4360 5.6264 41 1 -4.4015 6.5582 4.6963 42 1 -3.7870 5.0195 2.8815 43 1 -2.1289 3.2840 2.1854 44 1 -1.3438 4.6216 1.3130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188074617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:21 Heat of formation + Delta-G solvation = -166.114188 kcal Electronic energy + Delta-G solvation = -26937.794089 eV Core-core repulsion = 23012.807882 eV Total energy + Delta-G solvation = -3924.986207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.19394 -41.24743 -40.21254 -37.80321 -37.54181 -35.52655 -35.15423 -33.44565 -31.59064 -31.32011 -29.34024 -28.23761 -26.66145 -25.88524 -24.86710 -23.74464 -22.75450 -21.62829 -20.73172 -19.59278 -19.06057 -18.53233 -17.97471 -17.59306 -17.21366 -16.95647 -16.64891 -16.41638 -16.13608 -16.02193 -15.49300 -15.26535 -14.87031 -14.60981 -14.47515 -14.32577 -14.12279 -13.82877 -13.47564 -13.35640 -13.21875 -13.12131 -12.87302 -12.83627 -12.62072 -12.48222 -12.20856 -12.15141 -12.06800 -11.80712 -11.63404 -11.55107 -11.46116 -11.21312 -10.83325 -10.55466 -9.54440 -9.02083 -8.30382 -6.42983 0.31564 0.33112 1.24445 1.42112 1.44017 1.53802 1.78425 2.01318 2.40384 2.59646 2.73048 3.01413 3.34407 3.48573 3.70105 3.77037 3.95992 3.98206 4.14216 4.17175 4.34638 4.35885 4.36743 4.42208 4.44869 4.49877 4.52468 4.59843 4.73947 4.79945 4.83802 4.90455 4.94057 5.06920 5.14579 5.18639 5.25444 5.32827 5.42758 5.48428 5.52386 5.60374 5.88386 6.10996 6.26980 6.43047 6.61484 6.94972 7.27313 8.78896 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.002647 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.695695 B =10577.464041 C =11287.823455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.223 3.777 4 H 0.014 0.986 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.975 3.025 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.359 6.359 14 C 0.460 3.540 15 O -0.532 6.532 16 C -0.111 4.111 17 H 0.131 0.869 18 C 0.078 3.922 19 O -0.312 6.312 20 C 0.149 3.851 21 C -0.200 4.200 22 C 0.153 3.847 23 O -0.332 6.332 24 C 0.017 3.983 25 C -0.230 4.230 26 C -0.041 4.041 27 C -0.198 4.198 28 C -0.052 4.052 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.097 0.903 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.754 10.850 15.614 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.170 3.830 4 H 0.032 0.968 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.189 1.189 13 O -0.275 6.275 14 C 0.303 3.697 15 O -0.422 6.422 16 C -0.131 4.131 17 H 0.149 0.851 18 C 0.003 3.997 19 O -0.226 6.226 20 C 0.104 3.896 21 C -0.219 4.219 22 C 0.107 3.893 23 O -0.246 6.246 24 C -0.077 4.077 25 C -0.249 4.249 26 C -0.059 4.059 27 C -0.199 4.199 28 C -0.089 4.089 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.177 0.823 42 H 0.170 0.830 43 H 0.115 0.885 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.647 10.877 15.390 23.869 hybrid contribution 0.678 -0.425 -0.937 1.233 sum -13.969 10.452 14.453 22.655 Atomic orbital electron populations 1.21728 0.95907 1.00874 1.00384 1.21782 0.94875 0.97977 1.01456 1.20398 0.94551 0.89202 0.78817 0.96823 1.21286 0.90467 1.44657 1.02355 0.91428 1.25773 1.03871 0.94384 0.93988 1.70097 1.38089 1.44276 1.02785 0.85316 0.78154 0.79248 0.77462 1.19232 1.20589 1.18919 1.86459 1.35575 1.62788 1.42705 1.23584 0.79813 0.76399 0.89864 1.90612 1.55933 1.59093 1.36540 1.21698 0.97946 0.98811 0.94599 0.85123 1.22950 0.98328 0.93749 0.84697 1.86036 1.23626 1.76404 1.36500 1.18503 0.83183 0.93166 0.94725 1.19694 0.95694 1.03716 1.02809 1.18639 0.92687 0.89902 0.88097 1.86043 1.30607 1.60144 1.47806 1.23405 0.78346 1.01675 1.04258 1.21394 1.00372 1.04343 0.98742 1.20947 0.94475 0.94246 0.96252 1.19750 0.94565 1.04892 1.00738 1.20250 0.94272 0.97779 0.96550 0.91818 0.94037 0.94400 0.91552 0.92807 0.92106 0.85273 0.90843 0.84493 0.91328 0.86267 0.91420 0.82332 0.82973 0.88476 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.56 71.98 0.62 -4.87 16 2 C -0.12 -5.92 5.54 30.59 0.17 -5.76 16 3 C 0.22 11.77 2.12 29.85 0.06 11.84 16 4 H 0.01 0.84 7.10 -2.39 -0.02 0.82 16 5 C -0.55 -30.50 8.82 25.60 0.23 -30.28 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 7 C 0.02 1.10 5.16 84.66 0.44 1.54 16 8 N -0.92 -52.34 12.16 21.45 0.26 -52.08 16 9 Si 0.97 42.46 29.55 68.60 2.03 44.48 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 O -0.36 -16.33 9.70 -51.41 -0.50 -16.83 16 14 C 0.46 18.05 5.70 71.24 0.41 18.46 16 15 O -0.53 -23.50 12.93 21.96 0.28 -23.22 16 16 C -0.11 -3.25 2.86 -11.38 -0.03 -3.28 16 17 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 18 C 0.08 2.17 6.29 72.12 0.45 2.62 16 19 O -0.31 -8.69 10.27 -91.93 -0.94 -9.64 16 20 C 0.15 3.92 6.47 22.51 0.15 4.06 16 21 C -0.20 -4.87 9.87 22.52 0.22 -4.65 16 22 C 0.15 3.19 6.68 22.46 0.15 3.34 16 23 O -0.33 -6.16 10.50 -92.33 -0.97 -7.13 16 24 C 0.02 0.15 9.81 113.37 1.11 1.27 16 25 C -0.23 -3.95 9.04 22.35 0.20 -3.75 16 26 C -0.04 -0.78 9.66 22.29 0.22 -0.57 16 27 C -0.20 -4.75 5.75 -19.72 -0.11 -4.86 16 28 C -0.05 -1.33 4.66 29.90 0.14 -1.19 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.04 1.64 6.06 -2.39 -0.01 1.62 16 31 H 0.04 1.69 7.78 -2.39 -0.02 1.67 16 32 H 0.07 3.50 6.81 -2.39 -0.02 3.48 16 33 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.13 3.53 8.07 -2.39 -0.02 3.52 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 39 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 41 H 0.16 1.70 6.31 -2.91 -0.02 1.68 16 42 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 2.23 7.69 -2.38 -0.02 2.21 16 Total: -1.00 -66.70 359.67 5.58 -61.13 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.01 Total: 19.37 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.41 Total: -16.09 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.26 Total: -52.08 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -2.13 Total: -56.81 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.70 5.58 -61.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188074617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.987 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds