Wall clock time and date at job start Tue Mar 31 2020 12:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.53007 * 109.46878 * 239.99788 * 2 1 3 5 5 C 1.50702 * 109.46761 * 60.00236 * 4 2 1 6 6 H 1.07997 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46621 * 60.00072 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46996 * 300.00160 * 9 7 5 13 13 C 1.53005 * 109.47086 * 120.00215 * 2 1 3 14 14 O 1.45203 * 109.46655 * 300.00016 * 13 2 1 15 15 C 1.34755 * 116.99512 * 180.02562 * 14 13 2 16 16 O 1.21505 * 120.00034 * 359.97438 * 15 14 13 17 17 C 1.47406 * 119.99874 * 179.97438 * 15 14 13 18 18 C 1.39829 * 120.14609 * 359.97438 * 17 15 14 19 19 C 1.37723 * 119.94719 * 179.97438 * 18 17 15 20 20 C 1.38511 * 120.33609 * 0.07732 * 19 18 17 21 21 C 1.38582 * 120.42126 * 0.27942 * 20 19 18 22 22 C 1.38996 * 119.91298 * 359.32155 * 21 20 19 23 23 O 1.35802 * 120.87369 * 180.56901 * 22 21 20 24 24 C 1.43172 * 116.74257 * 342.99566 * 23 22 21 25 25 C 1.53470 * 108.25202 * 46.15890 * 24 23 22 26 26 O 1.36149 * 119.36407 * 179.97438 * 21 20 19 27 27 H 1.08997 * 109.47102 * 300.00190 * 1 2 3 28 28 H 1.08997 * 109.46833 * 59.99990 * 1 2 3 29 29 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47188 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47227 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47240 * 59.99895 * 3 2 1 33 33 H 1.09000 * 109.46920 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47222 * 300.00005 * 4 2 1 35 35 H 0.96995 * 120.00065 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47071 * 179.97438 * 13 2 1 37 37 H 1.09006 * 109.47013 * 59.99910 * 13 2 1 38 38 H 1.07997 * 120.02592 * 359.97000 * 18 17 15 39 39 H 1.07996 * 119.83632 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.78500 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.70990 * 165.85235 * 24 23 22 42 42 H 1.09003 * 109.70658 * 286.47258 * 24 23 22 43 43 H 1.08997 * 109.70835 * 60.02229 * 25 24 23 44 44 H 1.09006 * 109.70866 * 180.60047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6280 -1.5505 -3.8527 9 14 1.2479 0.3985 -5.2572 10 1 1.7420 1.7990 -5.2571 11 1 1.7439 -0.3008 -6.4697 12 1 -0.2371 0.3975 -5.2573 13 6 2.0401 -0.7213 1.2493 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6275 16 8 2.6194 -1.5399 3.6755 17 6 1.4647 0.0942 4.8740 18 6 0.6584 1.2355 4.8223 19 6 0.2362 1.8324 5.9894 20 6 0.6076 1.3091 7.2169 21 6 1.4123 0.1830 7.2852 22 6 1.8395 -0.4356 6.1160 23 8 2.6190 -1.5467 6.1602 24 6 3.2768 -1.8233 7.4015 25 6 2.2548 -1.6577 8.5344 26 8 1.7648 -0.3129 8.5032 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2491 34 1 1.6767 -1.7490 -1.2493 35 1 2.8623 -1.8819 -4.7336 36 1 3.1301 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 0.3669 1.6485 3.8679 39 1 -0.3868 2.7136 5.9474 40 1 0.2718 1.7847 8.1266 41 1 3.6574 -2.8446 7.3962 42 1 4.1007 -1.1241 7.5446 43 1 1.4284 -2.3532 8.3885 44 1 2.7344 -1.8529 9.4936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195092377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:52 Heat of formation + Delta-G solvation = -143.699318 kcal Electronic energy + Delta-G solvation = -26966.925195 eV Core-core repulsion = 23042.910970 eV Total energy + Delta-G solvation = -3924.014225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64693 -39.98610 -37.91977 -37.63545 -36.87010 -35.24614 -32.32924 -31.56483 -31.34979 -28.76608 -27.32180 -26.49798 -26.37408 -25.10417 -24.38402 -22.85397 -21.29187 -20.89773 -19.08920 -18.25134 -17.89714 -17.35673 -16.85360 -16.28209 -16.09438 -15.76112 -15.62701 -15.24020 -14.96698 -14.56972 -14.50633 -14.22385 -13.75332 -13.55593 -13.31056 -13.06113 -12.56403 -12.34162 -12.27043 -12.04589 -12.02809 -11.50055 -11.42865 -11.21445 -11.01948 -10.93156 -10.83508 -10.56477 -10.38788 -10.22783 -10.20936 -10.10506 -9.69231 -9.18651 -9.01233 -8.92874 -8.40798 -8.34455 -5.98801 -3.99930 0.48516 1.00093 2.55711 2.71827 2.84786 2.93482 3.34095 3.38961 3.40850 3.54138 3.85142 4.29871 4.44518 4.46727 4.53078 4.68299 4.78812 4.88461 5.00565 5.11004 5.21182 5.36766 5.37102 5.55852 5.56795 5.71391 5.78199 5.87063 6.05490 6.12189 6.23840 6.26530 6.41776 6.54660 6.54711 6.68058 6.74148 6.86624 7.04820 7.14462 7.14899 7.17040 7.63495 7.75658 7.99491 8.07200 8.41931 9.04272 9.62935 11.12868 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.002573 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.669439 B =10881.155402 C =11605.674074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.081 3.919 14 O -0.347 6.347 15 C 0.501 3.499 16 O -0.491 6.491 17 C -0.120 4.120 18 C -0.055 4.055 19 C -0.132 4.132 20 C -0.082 4.082 21 C 0.031 3.969 22 C 0.112 3.888 23 O -0.273 6.273 24 C 0.015 3.985 25 C 0.019 3.981 26 O -0.306 6.306 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 4.087 26.286 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 O -0.264 6.264 15 C 0.345 3.655 16 O -0.380 6.380 17 C -0.122 4.122 18 C -0.074 4.074 19 C -0.150 4.150 20 C -0.100 4.100 21 C -0.013 4.013 22 C 0.064 3.936 23 O -0.185 6.185 24 C -0.061 4.061 25 C -0.056 4.056 26 O -0.221 6.221 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.544 3.597 26.145 26.513 hybrid contribution 0.006 -0.012 -0.806 0.806 sum -2.537 3.585 25.338 25.716 Atomic orbital electron populations 1.21713 0.94829 1.00950 1.00785 1.20813 0.96140 0.96200 0.92670 1.21711 1.00046 0.95734 1.00786 1.19123 0.96379 0.95297 0.89420 1.21117 1.31229 1.12106 0.90302 0.92116 1.25016 0.95302 0.95101 0.99101 1.69957 1.36917 1.23087 1.23577 0.86679 0.79175 0.79762 0.82508 1.20271 1.21412 1.20264 1.23501 0.98934 0.95936 0.80808 1.86518 1.69590 1.55798 1.14467 1.20714 0.78232 0.82298 0.84303 1.90865 1.34622 1.24556 1.87944 1.18582 1.06120 0.98832 0.88626 1.21406 0.93600 0.92255 1.00095 1.20915 1.01945 1.01288 0.90836 1.20669 0.95462 0.94552 0.99363 1.18695 1.01170 0.98001 0.83479 1.18888 0.93594 0.88920 0.92168 1.86605 1.58846 1.38889 1.34149 1.23754 0.94721 1.04666 0.82955 1.23677 0.98133 0.82480 1.01329 1.86316 1.80407 1.29610 1.25727 0.94181 0.91598 0.93779 0.93785 0.91597 0.94182 0.96353 0.96351 0.92973 0.91630 0.91624 0.83151 0.84091 0.84281 0.85674 0.90212 0.90286 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 2 C -0.06 -1.19 0.61 -154.50 -0.09 -1.28 16 3 C -0.13 -2.39 8.08 37.15 0.30 -2.09 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.77 7.65 -34.44 -0.26 -14.03 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.08 1.56 4.33 37.16 0.16 1.72 16 14 O -0.35 -6.01 8.13 -40.64 -0.33 -6.34 16 15 C 0.50 8.64 7.89 34.46 0.27 8.91 16 16 O -0.49 -9.78 14.89 -26.68 -0.40 -10.18 16 17 C -0.12 -1.69 5.88 -104.86 -0.62 -2.31 16 18 C -0.06 -0.61 9.61 -39.18 -0.38 -0.99 16 19 C -0.13 -1.14 10.02 -39.67 -0.40 -1.53 16 20 C -0.08 -0.74 9.95 -39.35 -0.39 -1.13 16 21 C 0.03 0.35 6.49 -39.17 -0.25 0.09 16 22 C 0.11 1.49 6.51 -38.59 -0.25 1.24 16 23 O -0.27 -3.76 8.42 -47.36 -0.40 -4.16 16 24 C 0.01 0.12 7.26 37.40 0.27 0.40 16 25 C 0.02 0.13 7.26 37.40 0.27 0.41 16 26 O -0.31 -3.02 10.42 -33.04 -0.34 -3.36 16 27 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 28 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 32 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.29 362.83 -7.96 -41.25 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.39 Total: -2.64 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.28 Total: -10.45 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.47 Total: -24.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.29 -7.96 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195092377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.454 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds