Wall clock time and date at job start Tue Mar 31 2020 12:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.53007 * 109.46878 * 239.99788 * 2 1 3 5 5 C 1.50702 * 109.46761 * 60.00236 * 4 2 1 6 6 H 1.07997 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00223 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46621 * 60.00072 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46996 * 300.00160 * 9 7 5 13 13 C 1.53005 * 109.47086 * 120.00215 * 2 1 3 14 14 O 1.45203 * 109.46655 * 300.00016 * 13 2 1 15 15 C 1.34755 * 116.99512 * 180.02562 * 14 13 2 16 16 O 1.21505 * 120.00034 * 359.97438 * 15 14 13 17 17 C 1.47406 * 119.99874 * 179.97438 * 15 14 13 18 18 C 1.39829 * 120.14609 * 359.97438 * 17 15 14 19 19 C 1.37723 * 119.94719 * 179.97438 * 18 17 15 20 20 C 1.38511 * 120.33609 * 0.07732 * 19 18 17 21 21 C 1.38582 * 120.42126 * 0.27942 * 20 19 18 22 22 C 1.38996 * 119.91298 * 359.32155 * 21 20 19 23 23 O 1.35802 * 120.87369 * 180.56901 * 22 21 20 24 24 C 1.43172 * 116.74257 * 342.99566 * 23 22 21 25 25 C 1.53470 * 108.25202 * 46.15890 * 24 23 22 26 26 O 1.36149 * 119.36407 * 179.97438 * 21 20 19 27 27 H 1.08997 * 109.47102 * 300.00190 * 1 2 3 28 28 H 1.08997 * 109.46833 * 59.99990 * 1 2 3 29 29 H 1.08998 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47188 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47227 * 299.99768 * 3 2 1 32 32 H 1.08997 * 109.47240 * 59.99895 * 3 2 1 33 33 H 1.09000 * 109.46920 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47222 * 300.00005 * 4 2 1 35 35 H 0.96995 * 120.00065 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47071 * 179.97438 * 13 2 1 37 37 H 1.09006 * 109.47013 * 59.99910 * 13 2 1 38 38 H 1.07997 * 120.02592 * 359.97000 * 18 17 15 39 39 H 1.07996 * 119.83632 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.78500 * 179.97438 * 20 19 18 41 41 H 1.08994 * 109.70990 * 165.85235 * 24 23 22 42 42 H 1.09003 * 109.70658 * 286.47258 * 24 23 22 43 43 H 1.08997 * 109.70835 * 60.02229 * 25 24 23 44 44 H 1.09006 * 109.70866 * 180.60047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6280 -1.5505 -3.8527 9 14 1.2479 0.3985 -5.2572 10 1 1.7420 1.7990 -5.2571 11 1 1.7439 -0.3008 -6.4697 12 1 -0.2371 0.3975 -5.2573 13 6 2.0401 -0.7213 1.2493 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6275 16 8 2.6194 -1.5399 3.6755 17 6 1.4647 0.0942 4.8740 18 6 0.6584 1.2355 4.8223 19 6 0.2362 1.8324 5.9894 20 6 0.6076 1.3091 7.2169 21 6 1.4123 0.1830 7.2852 22 6 1.8395 -0.4356 6.1160 23 8 2.6190 -1.5467 6.1602 24 6 3.2768 -1.8233 7.4015 25 6 2.2548 -1.6577 8.5344 26 8 1.7648 -0.3129 8.5032 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2491 34 1 1.6767 -1.7490 -1.2493 35 1 2.8623 -1.8819 -4.7336 36 1 3.1301 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2492 38 1 0.3669 1.6485 3.8679 39 1 -0.3868 2.7136 5.9474 40 1 0.2718 1.7847 8.1266 41 1 3.6574 -2.8446 7.3962 42 1 4.1007 -1.1241 7.5446 43 1 1.4284 -2.3532 8.3885 44 1 2.7344 -1.8529 9.4936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195092377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:52 Heat of formation + Delta-G solvation = -162.238676 kcal Electronic energy + Delta-G solvation = -26967.729122 eV Core-core repulsion = 23042.910970 eV Total energy + Delta-G solvation = -3924.818152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.46614 -41.30722 -38.94858 -38.57214 -38.14028 -36.80833 -34.40533 -32.31477 -32.19462 -29.51740 -29.29571 -28.03418 -27.94294 -26.00945 -25.47597 -24.64747 -22.09958 -21.99676 -20.07960 -19.80077 -18.81021 -18.37676 -18.26482 -17.93919 -17.46516 -16.93148 -16.50408 -16.41959 -16.07895 -15.66978 -15.37378 -15.23043 -15.13932 -15.00568 -14.69055 -14.22098 -14.04281 -13.90710 -13.76150 -13.16115 -12.96060 -12.89880 -12.75618 -12.63575 -12.30416 -12.26639 -12.22468 -12.08343 -11.99037 -11.88649 -11.83622 -11.39181 -11.36391 -11.01494 -10.89949 -10.51341 -9.85741 -9.20320 -8.14791 -6.22940 -0.44299 0.21663 1.43099 1.46080 1.47634 1.52473 1.56426 1.97463 2.20019 2.44999 2.64394 3.16477 3.19625 3.52332 3.70435 3.86188 3.89825 3.93087 3.93497 4.13997 4.19261 4.22387 4.31698 4.41194 4.53791 4.57913 4.59453 4.65097 4.74978 4.94240 5.03942 5.06972 5.10031 5.14708 5.30366 5.41221 5.43143 5.46626 5.51368 5.54084 5.57537 5.75304 5.81819 5.87728 6.27254 6.28307 6.71663 6.90770 7.44694 8.97882 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.002573 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.669439 B =10881.155402 C =11605.674074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.119 4.119 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.290 1.290 12 H -0.266 1.266 13 C 0.091 3.909 14 O -0.338 6.338 15 C 0.499 3.501 16 O -0.530 6.530 17 C -0.152 4.152 18 C -0.055 4.055 19 C -0.117 4.117 20 C -0.070 4.070 21 C 0.023 3.977 22 C 0.092 3.908 23 O -0.310 6.310 24 C 0.005 3.995 25 C 0.020 3.980 26 O -0.311 6.311 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.069 0.931 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 6.725 28.364 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.176 4.176 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.190 1.190 13 C 0.017 3.983 14 O -0.254 6.254 15 C 0.345 3.655 16 O -0.421 6.421 17 C -0.154 4.154 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.022 4.022 22 C 0.045 3.955 23 O -0.223 6.223 24 C -0.070 4.070 25 C -0.054 4.054 26 O -0.226 6.226 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.188 0.812 41 H 0.162 0.838 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.440 6.256 28.248 29.272 hybrid contribution 0.618 -0.865 -1.286 1.669 sum -3.822 5.391 26.962 27.760 Atomic orbital electron populations 1.21647 0.93290 1.00844 1.01835 1.20628 0.97278 0.96604 0.90816 1.21645 0.99597 0.94536 1.01836 1.18987 0.94426 0.94305 0.92003 1.21508 1.30688 1.12218 0.90829 0.90805 1.25968 0.95561 0.95859 1.02762 1.70117 1.38641 1.24989 1.24272 0.85550 0.79013 0.78752 0.78053 1.19045 1.21595 1.19034 1.23136 0.98131 0.95383 0.81616 1.86494 1.69437 1.55300 1.14152 1.21417 0.77360 0.81875 0.84837 1.90836 1.36568 1.26385 1.88262 1.18604 1.08852 1.00781 0.87159 1.21606 0.92880 0.91191 1.01686 1.21340 1.00985 1.01638 0.89523 1.21161 0.93581 0.93184 1.00876 1.18936 1.01510 0.98573 0.83163 1.19128 0.94208 0.89316 0.92805 1.86537 1.59396 1.39405 1.36985 1.24079 0.95036 1.05865 0.81993 1.23921 0.97852 0.81297 1.02372 1.86302 1.80436 1.30921 1.24974 0.91202 0.92291 0.94540 0.94539 0.92293 0.91200 0.99363 0.99364 0.93076 0.92812 0.92823 0.82327 0.80150 0.81155 0.83803 0.89965 0.90191 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.08 71.98 0.58 -3.85 16 2 C -0.05 -2.19 0.61 -52.18 -0.03 -2.23 16 3 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.17 7.65 25.60 0.20 -27.97 16 6 H 0.07 3.78 5.68 -2.91 -0.02 3.76 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.09 3.63 4.33 71.98 0.31 3.94 16 14 O -0.34 -11.72 8.13 -56.66 -0.46 -12.18 16 15 C 0.50 17.71 7.89 70.24 0.55 18.27 16 16 O -0.53 -22.30 14.89 26.90 0.40 -21.90 16 17 C -0.15 -4.27 5.88 -20.02 -0.12 -4.39 16 18 C -0.06 -1.10 9.61 22.53 0.22 -0.89 16 19 C -0.12 -1.56 10.02 22.21 0.22 -1.33 16 20 C -0.07 -1.01 9.95 22.42 0.22 -0.78 16 21 C 0.02 0.47 6.49 22.53 0.15 0.62 16 22 C 0.09 2.47 6.51 22.91 0.15 2.62 16 23 O -0.31 -8.82 8.42 -64.33 -0.54 -9.36 16 24 C 0.00 0.08 7.26 72.14 0.52 0.60 16 25 C 0.02 0.25 7.26 72.14 0.52 0.77 16 26 O -0.31 -5.48 10.42 -82.99 -0.86 -6.34 16 27 H 0.07 2.18 7.68 -2.39 -0.02 2.16 16 28 H 0.06 2.27 6.62 -2.39 -0.02 2.25 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.27 6.62 -2.39 -0.02 2.25 16 32 H 0.07 2.18 7.68 -2.39 -0.02 2.16 16 33 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.16 2.80 7.61 -2.91 -0.02 2.78 16 39 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.16 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -75.70 362.83 6.51 -69.19 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.00 Total: 8.07 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.66 Total: -16.05 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.47 Total: -49.79 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -75.70 6.51 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195092377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.049 kcal (2) G-P(sol) polarization free energy of solvation -75.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds