Wall clock time and date at job start Tue Mar 31 2020 12:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47728 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47300 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00298 * 270.00176 * 5 4 3 7 7 C 1.50696 * 109.47189 * 269.99842 * 6 5 4 8 8 H 1.07998 * 120.00410 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99815 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00123 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99983 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46826 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46657 * 120.00352 * 11 9 7 14 14 H 1.48491 * 109.47442 * 240.00465 * 11 9 7 15 15 C 1.34780 * 120.00074 * 90.00437 * 5 4 3 16 16 S 1.71203 * 120.00271 * 180.02562 * 15 5 4 17 17 N 1.34776 * 119.99886 * 359.97438 * 15 5 4 18 18 C 1.34780 * 120.00311 * 180.02562 * 17 15 5 19 19 O 1.21524 * 119.99283 * 0.02562 * 18 17 15 20 20 C 1.47769 * 119.99951 * 180.02562 * 18 17 15 21 21 C 1.39615 * 120.14226 * 180.02562 * 20 18 17 22 22 C 1.37948 * 119.84619 * 179.97438 * 21 20 18 23 23 C 1.38369 * 120.14900 * 359.97438 * 22 21 20 24 24 C 1.38367 * 120.30176 * 0.02562 * 23 22 21 25 25 C 1.37945 * 120.14551 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46760 * 300.00273 * 1 2 3 28 28 H 1.08996 * 109.46900 * 59.99603 * 1 2 3 29 29 H 1.08998 * 109.47016 * 239.99704 * 2 1 3 30 30 H 1.09001 * 109.47335 * 120.00563 * 2 1 3 31 31 H 1.09008 * 109.46715 * 60.00141 * 3 2 1 32 32 H 1.08996 * 109.47254 * 300.00180 * 3 2 1 33 33 H 1.08999 * 109.47159 * 60.00426 * 4 3 2 34 34 H 1.08996 * 109.47211 * 300.00399 * 4 3 2 35 35 H 1.09001 * 109.46754 * 30.00212 * 6 5 4 36 36 H 1.09006 * 109.46833 * 149.99654 * 6 5 4 37 37 H 0.96995 * 119.99626 * 179.97438 * 10 9 7 38 38 H 0.96997 * 119.99989 * 0.02562 * 17 15 5 39 39 H 1.07998 * 120.08035 * 359.69992 * 21 20 18 40 40 H 1.08000 * 119.92562 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.84801 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.92878 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.07609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3033 3.5134 -1.2690 7 6 5.7267 3.2763 -1.7033 8 1 6.3835 2.6724 -1.0947 9 6 6.1905 3.8302 -2.8776 10 7 5.3908 4.5660 -3.6185 11 14 7.9551 3.5369 -3.4157 12 1 8.6423 2.6823 -2.4144 13 1 7.9635 2.8567 -4.7357 14 1 8.6621 4.8381 -3.5249 15 6 4.2828 3.4595 1.1670 16 16 4.8530 5.0738 1.1663 17 7 4.0572 2.8250 2.3344 18 6 4.2810 3.4611 3.5014 19 8 4.6857 4.6070 3.5008 20 6 4.0342 2.7652 4.7814 21 6 4.2644 3.4214 5.9920 22 6 4.0315 2.7661 7.1833 23 6 3.5701 1.4616 7.1802 24 6 3.3398 0.8054 5.9841 25 6 3.5687 1.4489 4.7856 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6768 1.9563 -0.8899 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9286 0.8908 35 1 3.6227 3.1289 -2.0286 36 1 4.1362 4.5827 -1.1392 37 1 5.7172 4.9559 -4.4444 38 1 3.7338 1.9105 2.3348 39 1 4.6283 4.4383 5.9958 40 1 4.2088 3.2727 8.1205 41 1 3.3898 0.9531 8.1158 42 1 2.9794 -0.2127 5.9887 43 1 3.3889 0.9355 3.8526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225894384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:22 Heat of formation + Delta-G solvation = 21.435738 kcal Electronic energy + Delta-G solvation = -24413.184138 eV Core-core repulsion = 20971.376328 eV Total energy + Delta-G solvation = -3441.807810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81286 -39.02961 -37.90196 -35.24865 -34.38388 -32.57017 -31.51483 -31.19320 -29.58083 -27.59186 -25.27119 -24.19491 -23.22180 -22.69183 -21.49356 -20.95583 -20.72955 -18.61907 -17.35879 -16.76512 -16.51073 -15.78235 -15.47017 -15.32966 -15.16095 -14.67201 -14.54885 -14.33033 -13.96713 -13.84379 -13.66977 -13.19586 -12.95210 -12.79945 -12.47955 -11.97110 -11.91062 -11.56229 -11.39095 -11.33867 -11.28695 -11.20023 -10.91132 -10.75894 -10.70074 -10.34212 -10.17899 -10.07257 -9.80773 -9.30156 -9.22351 -8.69483 -8.45562 -6.94959 -6.07384 -5.65470 -4.11510 0.58874 1.07618 1.77144 2.50950 2.93353 3.16288 3.30269 3.39631 3.41934 3.62687 3.70908 4.42300 4.46017 4.49658 4.63074 4.71899 4.77050 4.84869 4.93778 5.04264 5.06829 5.20028 5.28613 5.40170 5.47530 5.49067 5.62227 5.65163 5.68478 5.81494 5.92320 6.00114 6.02667 6.07868 6.09902 6.15083 6.21969 6.58133 6.67020 6.91479 7.32978 7.45027 7.80967 7.87802 8.10929 8.15979 8.87251 9.51645 11.00990 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.004108 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.358449 B = 6813.838126 C = 8414.553625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.089 3.911 5 N -0.528 5.528 6 C 0.236 3.764 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.900 3.100 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.281 1.281 15 C 0.515 3.485 16 S -0.538 6.538 17 N -0.651 5.651 18 C 0.529 3.471 19 O -0.407 6.407 20 C -0.127 4.127 21 C -0.058 4.058 22 C -0.126 4.126 23 C -0.099 4.099 24 C -0.126 4.126 25 C -0.093 4.093 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.398 0.602 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.494 -13.864 17.085 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.179 4.179 4 C -0.038 4.038 5 N -0.234 5.234 6 C 0.117 3.883 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.135 4.135 10 N -0.527 5.527 11 Si 0.727 3.273 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.207 1.207 15 C 0.163 3.837 16 S -0.403 6.403 17 N -0.299 5.299 18 C 0.311 3.689 19 O -0.273 6.273 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.144 4.144 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.238 0.762 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.852 -11.932 16.780 22.412 hybrid contribution 0.481 -1.733 -0.408 1.844 sum -8.371 -13.665 16.372 22.909 Atomic orbital electron populations 1.21757 0.95632 1.01489 1.02044 1.21459 0.96114 0.96063 1.02259 1.22095 0.94856 0.97505 1.03428 1.21899 0.94239 0.83949 1.03708 1.48131 1.56461 1.12222 1.06542 1.19971 0.97427 0.95893 0.74978 1.21152 0.96018 1.32537 1.06224 0.92485 1.24828 0.97786 0.94626 0.96241 1.69926 1.35597 1.32977 1.14242 0.86414 0.84576 0.78200 0.78066 1.19888 1.21083 1.20665 1.22485 0.85144 0.95363 0.80691 1.93137 1.57320 0.96599 1.93265 1.43153 1.63292 1.17444 1.06020 1.18434 0.80470 0.87178 0.82854 1.91317 1.35639 1.14748 1.85617 1.20152 1.04324 0.94975 0.93688 1.21334 0.95237 1.00463 0.90628 1.21186 1.00036 0.95065 0.98084 1.21380 0.97229 0.94821 0.98250 1.21083 1.00911 1.00267 0.92128 1.21298 0.97634 0.93635 0.98574 0.92761 0.92857 0.92482 0.91360 0.92119 0.92121 0.90334 0.87928 0.91938 0.94157 0.90371 0.92641 0.76234 0.84227 0.85179 0.85587 0.85393 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.14 -1.62 5.54 -26.74 -0.15 -1.77 16 4 C 0.09 1.24 5.17 -4.05 -0.02 1.22 16 5 N -0.53 -10.39 2.46 -177.09 -0.43 -10.82 16 6 C 0.24 5.81 4.92 -5.20 -0.03 5.78 16 7 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 11 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.52 10.66 7.65 -86.92 -0.66 9.99 16 16 S -0.54 -14.10 25.01 -107.50 -2.69 -16.79 16 17 N -0.65 -10.33 5.05 -13.80 -0.07 -10.40 16 18 C 0.53 8.76 7.70 -12.36 -0.10 8.66 16 19 O -0.41 -8.54 13.10 5.34 0.07 -8.47 16 20 C -0.13 -1.57 5.87 -104.97 -0.62 -2.18 16 21 C -0.06 -0.65 9.60 -39.17 -0.38 -1.02 16 22 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 23 C -0.10 -0.72 10.04 -39.49 -0.40 -1.12 16 24 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 25 C -0.09 -0.86 9.54 -39.18 -0.37 -1.23 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 34 H 0.06 0.69 6.37 -51.93 -0.33 0.36 16 35 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.40 4.66 4.46 -40.82 -0.18 4.48 16 39 H 0.14 1.63 7.65 -52.49 -0.40 1.23 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.86 6.41 -52.48 -0.34 0.53 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -35.61 371.44 -11.74 -47.35 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.20 Total: 1.08 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -3.72 Total: 0.73 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.23 Total: -46.31 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -14.10 SS G_CDS: -2.69 Total: -16.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.61 -11.74 -47.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225894384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.787 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds