Wall clock time and date at job start Tue Mar 31 2020 12:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47728 * 2 1 4 4 C 1.52995 * 109.47421 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47300 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00298 * 270.00176 * 5 4 3 7 7 C 1.50696 * 109.47189 * 269.99842 * 6 5 4 8 8 H 1.07998 * 120.00410 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99815 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00123 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99983 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46826 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46657 * 120.00352 * 11 9 7 14 14 H 1.48491 * 109.47442 * 240.00465 * 11 9 7 15 15 C 1.34780 * 120.00074 * 90.00437 * 5 4 3 16 16 S 1.71203 * 120.00271 * 180.02562 * 15 5 4 17 17 N 1.34776 * 119.99886 * 359.97438 * 15 5 4 18 18 C 1.34780 * 120.00311 * 180.02562 * 17 15 5 19 19 O 1.21524 * 119.99283 * 0.02562 * 18 17 15 20 20 C 1.47769 * 119.99951 * 180.02562 * 18 17 15 21 21 C 1.39615 * 120.14226 * 180.02562 * 20 18 17 22 22 C 1.37948 * 119.84619 * 179.97438 * 21 20 18 23 23 C 1.38369 * 120.14900 * 359.97438 * 22 21 20 24 24 C 1.38367 * 120.30176 * 0.02562 * 23 22 21 25 25 C 1.37945 * 120.14551 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46760 * 300.00273 * 1 2 3 28 28 H 1.08996 * 109.46900 * 59.99603 * 1 2 3 29 29 H 1.08998 * 109.47016 * 239.99704 * 2 1 3 30 30 H 1.09001 * 109.47335 * 120.00563 * 2 1 3 31 31 H 1.09008 * 109.46715 * 60.00141 * 3 2 1 32 32 H 1.08996 * 109.47254 * 300.00180 * 3 2 1 33 33 H 1.08999 * 109.47159 * 60.00426 * 4 3 2 34 34 H 1.08996 * 109.47211 * 300.00399 * 4 3 2 35 35 H 1.09001 * 109.46754 * 30.00212 * 6 5 4 36 36 H 1.09006 * 109.46833 * 149.99654 * 6 5 4 37 37 H 0.96995 * 119.99626 * 179.97438 * 10 9 7 38 38 H 0.96997 * 119.99989 * 0.02562 * 17 15 5 39 39 H 1.07998 * 120.08035 * 359.69992 * 21 20 18 40 40 H 1.08000 * 119.92562 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.84801 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.92878 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.07609 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3033 3.5134 -1.2690 7 6 5.7267 3.2763 -1.7033 8 1 6.3835 2.6724 -1.0947 9 6 6.1905 3.8302 -2.8776 10 7 5.3908 4.5660 -3.6185 11 14 7.9551 3.5369 -3.4157 12 1 8.6423 2.6823 -2.4144 13 1 7.9635 2.8567 -4.7357 14 1 8.6621 4.8381 -3.5249 15 6 4.2828 3.4595 1.1670 16 16 4.8530 5.0738 1.1663 17 7 4.0572 2.8250 2.3344 18 6 4.2810 3.4611 3.5014 19 8 4.6857 4.6070 3.5008 20 6 4.0342 2.7652 4.7814 21 6 4.2644 3.4214 5.9920 22 6 4.0315 2.7661 7.1833 23 6 3.5701 1.4616 7.1802 24 6 3.3398 0.8054 5.9841 25 6 3.5687 1.4489 4.7856 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6768 1.9563 -0.8899 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9286 0.8908 35 1 3.6227 3.1289 -2.0286 36 1 4.1362 4.5827 -1.1392 37 1 5.7172 4.9559 -4.4444 38 1 3.7338 1.9105 2.3348 39 1 4.6283 4.4383 5.9958 40 1 4.2088 3.2727 8.1205 41 1 3.3898 0.9531 8.1158 42 1 2.9794 -0.2127 5.9887 43 1 3.3889 0.9355 3.8526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225894384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:21 Heat of formation + Delta-G solvation = 0.378036 kcal Electronic energy + Delta-G solvation = -24414.097269 eV Core-core repulsion = 20971.376328 eV Total energy + Delta-G solvation = -3442.720940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15934 -40.13751 -39.13667 -36.42729 -35.83885 -34.50416 -32.38786 -31.89078 -30.76949 -29.41136 -26.63104 -25.47412 -24.67002 -23.48832 -22.57418 -22.18453 -21.93276 -19.84689 -18.82352 -18.66101 -17.70254 -16.98878 -16.82879 -16.54066 -16.28724 -16.20653 -15.66287 -15.51382 -15.29017 -14.90920 -14.44719 -14.37366 -14.03964 -13.92117 -13.61764 -13.54067 -13.22531 -12.88171 -12.75499 -12.65539 -12.39717 -12.34534 -12.17359 -12.14023 -12.03868 -11.84388 -11.72726 -11.63099 -11.48876 -10.62898 -10.44208 -9.97940 -9.95119 -8.90986 -8.22135 -7.62085 -6.33479 -0.36384 0.22423 0.41120 0.87253 1.35750 1.41130 1.47162 1.52252 1.80527 2.12954 2.40423 2.87254 3.11307 3.40381 3.66771 3.79216 3.85846 3.99633 4.06527 4.22202 4.24432 4.38174 4.45173 4.48660 4.51776 4.66224 4.73484 4.81208 4.89861 4.96123 5.03364 5.05658 5.15504 5.24563 5.28377 5.34105 5.39505 5.46693 5.48237 5.50741 5.66419 5.82061 5.94130 5.97848 6.14776 6.70577 6.85516 7.33138 8.85962 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011528 B = 0.004108 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.358449 B = 6813.838126 C = 8414.553625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.132 4.132 4 C 0.078 3.922 5 N -0.519 5.519 6 C 0.252 3.748 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.018 3.982 10 N -0.921 5.921 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.267 1.267 14 H -0.288 1.288 15 C 0.551 3.449 16 S -0.674 6.674 17 N -0.628 5.628 18 C 0.527 3.473 19 O -0.460 6.460 20 C -0.151 4.151 21 C -0.078 4.078 22 C -0.127 4.127 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.089 4.089 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.267 0.733 38 H 0.424 0.576 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 -18.926 19.372 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.171 4.171 4 C -0.046 4.046 5 N -0.221 5.221 6 C 0.131 3.869 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.182 4.182 10 N -0.561 5.561 11 Si 0.787 3.213 12 H -0.194 1.194 13 H -0.192 1.192 14 H -0.214 1.214 15 C 0.192 3.808 16 S -0.542 6.542 17 N -0.277 5.277 18 C 0.312 3.688 19 O -0.328 6.328 20 C -0.155 4.155 21 C -0.097 4.097 22 C -0.145 4.145 23 C -0.103 4.103 24 C -0.138 4.138 25 C -0.107 4.107 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.268 0.732 39 H 0.136 0.864 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.845 -17.098 19.101 27.461 hybrid contribution 0.657 -0.340 -0.973 1.222 sum -9.188 -17.437 18.128 26.779 Atomic orbital electron populations 1.21765 0.95203 1.02413 1.01641 1.21449 0.96387 0.93592 1.03774 1.22041 0.92630 0.99855 1.02566 1.22409 0.96021 0.80306 1.05848 1.48082 1.54973 1.14239 1.04855 1.19423 0.96512 0.94158 0.76791 1.21343 0.96905 1.32261 1.06114 0.93113 1.25639 1.01661 0.94406 0.96484 1.70029 1.37408 1.33889 1.14740 0.85452 0.79689 0.77765 0.78383 1.19426 1.19161 1.21437 1.21758 0.83385 0.93350 0.82288 1.93416 1.63650 1.02664 1.94433 1.43016 1.62256 1.18203 1.04248 1.19307 0.78601 0.86863 0.84004 1.91295 1.37983 1.17312 1.86205 1.19791 1.08174 0.96633 0.90939 1.21368 0.96419 1.00116 0.91791 1.21455 0.99514 0.95913 0.97604 1.21884 0.94510 0.93924 0.99950 1.21542 0.99430 1.01687 0.91122 1.21570 0.96430 0.91957 1.00754 0.91151 0.92514 0.93771 0.91227 0.89233 0.91727 0.92685 0.87773 0.87860 0.94073 0.94516 0.92441 0.73236 0.86393 0.83037 0.82014 0.81663 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.11 -1.56 5.93 30.59 0.18 -1.38 16 3 C -0.13 -2.77 5.54 30.59 0.17 -2.60 16 4 C 0.08 2.00 5.17 86.38 0.45 2.45 16 5 N -0.52 -20.57 2.46 -714.19 -1.75 -22.33 16 6 C 0.25 12.91 4.92 85.63 0.42 13.33 16 7 C -0.53 -29.44 9.39 25.60 0.24 -29.20 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.02 1.02 5.46 84.65 0.46 1.48 16 10 N -0.92 -55.05 13.29 21.45 0.28 -54.77 16 11 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 15 C 0.55 23.40 7.65 179.05 1.37 24.77 16 16 S -0.67 -38.17 25.01 -56.49 -1.41 -39.59 16 17 N -0.63 -19.52 5.05 -315.86 -1.60 -21.12 16 18 C 0.53 17.84 7.70 86.76 0.67 18.50 16 19 O -0.46 -20.79 13.10 -3.79 -0.05 -20.83 16 20 C -0.15 -3.56 5.87 -20.09 -0.12 -3.68 16 21 C -0.08 -1.73 9.60 22.53 0.22 -1.51 16 22 C -0.13 -1.79 10.03 22.23 0.22 -1.57 16 23 C -0.08 -0.80 10.04 22.33 0.22 -0.58 16 24 C -0.12 -1.13 10.03 22.23 0.22 -0.91 16 25 C -0.09 -1.28 9.54 22.53 0.21 -1.06 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 34 H 0.10 1.83 6.37 -2.39 -0.02 1.81 16 35 H 0.04 2.10 8.07 -2.39 -0.02 2.08 16 36 H 0.04 2.23 6.58 -2.38 -0.02 2.21 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.42 8.60 4.46 -92.71 -0.41 8.18 16 39 H 0.12 3.03 7.65 -2.91 -0.02 3.00 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.15 1.27 6.41 -2.91 -0.02 1.25 16 Total: -1.00 -87.07 371.44 3.75 -83.32 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.60 Total: 11.18 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 5.66 Total: 16.73 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -3.07 Total: -98.21 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -38.17 SS G_CDS: -1.41 Total: -39.59 kcal Total: -87.07 3.75 -83.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225894384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.694 kcal (2) G-P(sol) polarization free energy of solvation -87.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds