Wall clock time and date at job start Tue Mar 31 2020 12:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46961 * 2 1 4 4 C 1.52998 * 109.46782 * 240.00323 * 2 1 3 5 5 S 1.81396 * 109.47086 * 120.00082 * 2 1 3 6 6 C 1.76194 * 103.00112 * 60.00067 * 5 2 1 7 7 C 1.39136 * 119.65024 * 179.72583 * 6 5 2 8 8 C 1.39562 * 118.92112 * 180.29741 * 7 6 5 9 9 C 1.48005 * 120.88853 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00006 * 335.24934 * 9 8 7 11 11 N 1.34778 * 120.00544 * 155.24579 * 9 8 7 12 12 C 1.36804 * 119.99434 * 6.40206 * 11 9 8 13 13 H 1.07994 * 120.00528 * 309.05797 * 12 11 9 14 14 C 1.39104 * 119.99598 * 129.05817 * 12 11 9 15 15 N 1.31318 * 120.00117 * 342.41326 * 14 12 11 16 16 Si 1.86800 * 119.99853 * 162.41042 * 14 12 11 17 17 H 1.48498 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46966 * 119.99917 * 16 14 12 19 19 H 1.48493 * 109.47332 * 240.00281 * 16 14 12 20 20 C 1.46500 * 120.00433 * 186.40776 * 11 9 8 21 21 C 1.53000 * 117.49907 * 179.17572 * 20 11 9 22 22 C 1.52997 * 117.49877 * 110.55271 * 20 11 9 23 23 C 1.40133 * 118.22870 * 359.97438 * 8 7 6 24 24 C 1.37901 * 119.17772 * 359.97438 * 23 8 7 25 25 N 1.31939 * 121.01722 * 0.02681 * 24 23 8 26 26 H 1.08999 * 109.47111 * 300.00014 * 1 2 3 27 27 H 1.09004 * 109.47334 * 59.99788 * 1 2 3 28 28 H 1.08991 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47270 * 300.00251 * 3 2 1 31 31 H 1.08999 * 109.47219 * 60.00053 * 3 2 1 32 32 H 1.09002 * 109.47265 * 299.99429 * 4 2 1 33 33 H 1.09000 * 109.47342 * 60.00357 * 4 2 1 34 34 H 1.09008 * 109.46486 * 180.02562 * 4 2 1 35 35 H 1.07998 * 120.53970 * 0.24941 * 7 6 5 36 36 H 0.97005 * 120.00257 * 185.05329 * 15 14 12 37 37 H 1.08994 * 115.54471 * 324.87937 * 20 11 9 38 38 H 1.09007 * 117.49722 * 359.97438 * 21 20 11 39 39 H 1.09001 * 117.50055 * 145.01779 * 21 20 11 40 40 H 1.09002 * 117.50084 * 214.97554 * 22 20 11 41 41 H 1.09002 * 117.49972 * 359.97438 * 22 20 11 42 42 H 1.08004 * 120.41253 * 180.02562 * 23 8 7 43 43 H 1.08005 * 119.49768 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8551 1.4811 6 6 1.4575 -2.4726 1.3091 7 6 1.7186 -3.4349 2.2795 8 6 1.1798 -4.7130 2.1249 9 6 1.4302 -5.7699 3.1302 10 8 2.4201 -5.7172 3.8339 11 7 0.5607 -6.7908 3.2658 12 6 -0.4816 -6.9223 2.3895 13 1 -1.1282 -6.0809 2.1892 14 6 -0.7085 -8.1400 1.7566 15 7 0.2411 -9.0462 1.7164 16 14 -2.3641 -8.4863 0.9637 17 1 -3.2552 -7.3124 1.1457 18 1 -2.1744 -8.7430 -0.4865 19 1 -2.9786 -9.6783 1.6013 20 6 0.7317 -7.7594 4.3515 21 6 -0.2993 -8.8843 4.4635 22 6 -0.2990 -7.7426 5.4820 23 6 0.3953 -4.9689 0.9923 24 6 0.1842 -3.9582 0.0782 25 7 0.7090 -2.7607 0.2555 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.3291 -3.1969 3.1381 36 1 0.1094 -9.8648 1.2129 37 1 1.7633 -7.9938 4.6141 38 1 -1.1051 -8.9034 3.7296 39 1 0.0539 -9.8591 4.7999 40 1 0.0544 -7.9664 6.4886 41 1 -1.1040 -7.0106 5.4183 42 1 -0.0394 -5.9455 0.8376 43 1 -0.4199 -4.1497 -0.7963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272293947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:47 Heat of formation + Delta-G solvation = 44.124068 kcal Electronic energy + Delta-G solvation = -24965.058217 eV Core-core repulsion = 21524.234247 eV Total energy + Delta-G solvation = -3440.823970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89878 -38.42231 -36.29650 -36.08613 -33.62761 -32.01969 -31.30594 -30.64552 -27.34494 -27.22182 -25.54932 -24.28001 -23.10090 -21.47863 -21.08066 -20.51181 -19.60925 -18.04694 -16.91081 -16.17654 -15.77160 -15.30489 -15.17744 -14.83707 -14.38527 -14.21659 -14.17729 -13.85361 -13.76706 -13.63353 -13.05812 -12.83781 -12.52269 -12.24567 -12.16764 -12.08120 -11.68438 -11.53435 -11.39135 -11.11990 -11.04663 -10.98235 -10.90503 -10.54501 -10.49657 -9.91632 -9.85793 -9.51540 -9.36380 -9.21365 -9.12691 -9.00544 -8.57206 -7.44717 -7.23086 -6.58991 -4.38327 1.41690 1.54925 1.70604 2.42932 2.94615 3.07269 3.09514 3.67903 3.86292 4.31299 4.44122 4.62342 4.77150 4.78045 4.96970 5.05878 5.12963 5.48351 5.51820 5.56841 5.57866 5.70603 5.75057 5.80992 5.86027 5.88087 5.96869 5.99083 6.00273 6.01265 6.09882 6.16068 6.38987 6.41201 6.46958 6.53427 6.71657 6.90775 6.96754 7.11559 7.15602 7.27292 7.84658 8.09797 8.15000 8.78151 9.22816 9.69264 10.41656 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.003874 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.850398 B = 7225.388333 C = 8192.854176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.131 4.131 4 C -0.149 4.149 5 S -0.094 6.094 6 C 0.103 3.897 7 C -0.107 4.107 8 C -0.038 4.038 9 C 0.522 3.478 10 O -0.590 6.590 11 N -0.400 5.400 12 C -0.366 4.366 13 H 0.094 0.906 14 C 0.060 3.940 15 N -0.832 5.832 16 Si 0.900 3.100 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.274 1.274 20 C 0.108 3.892 21 C -0.146 4.146 22 C -0.214 4.214 23 C -0.133 4.133 24 C 0.079 3.921 25 N -0.481 5.481 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.274 0.726 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.193 0.807 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 10.689 -4.300 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.190 4.190 4 C -0.207 4.207 5 S 0.146 5.854 6 C -0.145 4.145 7 C -0.134 4.134 8 C -0.050 4.050 9 C 0.311 3.689 10 O -0.475 6.475 11 N -0.117 5.117 12 C -0.494 4.494 13 H 0.111 0.889 14 C -0.151 4.151 15 N -0.463 5.463 16 Si 0.725 3.275 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.199 1.199 20 C 0.003 3.997 21 C -0.184 4.184 22 C -0.253 4.253 23 C -0.155 4.155 24 C -0.079 4.079 25 N -0.195 5.195 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.209 0.791 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.868 11.621 -3.729 12.236 hybrid contribution -1.477 -1.552 -0.825 2.296 sum -2.346 10.070 -4.554 11.298 Atomic orbital electron populations 1.22225 0.92272 1.04888 1.01338 1.22671 0.99299 0.97098 0.95415 1.21723 1.01530 0.93126 1.02578 1.22224 1.00759 1.02872 0.94872 1.85330 1.65370 1.02687 1.32024 1.22494 0.99960 0.97712 0.94343 1.21675 1.00216 0.92009 0.99507 1.20295 0.95643 0.93278 0.95820 1.18172 0.82959 0.83995 0.83749 1.90637 1.28574 1.79483 1.48775 1.42553 1.23680 1.21852 1.23605 1.19362 1.08138 0.98944 1.22927 0.88858 1.25514 0.97862 0.96023 0.95666 1.69942 1.31307 1.08820 1.36277 0.86303 0.82580 0.79491 0.79175 1.18609 1.20055 1.19935 1.21207 0.94523 0.94642 0.89363 1.23026 1.02846 0.92047 1.00472 1.23363 1.04024 1.03447 0.94425 1.24020 0.95390 1.03782 0.92270 1.22752 0.97942 0.88339 0.98883 1.67645 1.09667 1.22161 1.20020 0.92661 0.92550 0.89254 0.91904 0.91127 0.91920 0.89295 0.92536 0.92627 0.84430 0.91522 0.87613 0.87473 0.90367 0.90074 0.89437 0.79086 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.27 37.16 0.31 -1.51 16 2 C -0.03 -0.43 0.86 -90.62 -0.08 -0.50 16 3 C -0.13 -1.28 8.48 37.16 0.32 -0.96 16 4 C -0.15 -1.83 8.27 37.16 0.31 -1.52 16 5 S -0.09 -1.41 20.85 -107.50 -2.24 -3.65 16 6 C 0.10 1.81 6.67 -16.97 -0.11 1.70 16 7 C -0.11 -2.12 9.42 -38.75 -0.36 -2.48 16 8 C -0.04 -0.81 5.73 -104.69 -0.60 -1.41 16 9 C 0.52 12.82 7.51 -12.26 -0.09 12.73 16 10 O -0.59 -15.77 16.50 5.31 0.09 -15.68 16 11 N -0.40 -9.61 2.72 -108.74 -0.30 -9.91 16 12 C -0.37 -8.36 5.29 -15.01 -0.08 -8.44 16 13 H 0.09 2.08 6.35 -52.49 -0.33 1.75 16 14 C 0.06 1.34 2.85 -17.45 -0.05 1.29 16 15 N -0.83 -19.94 11.90 55.50 0.66 -19.27 16 16 Si 0.90 17.21 29.30 -169.99 -4.98 12.23 16 17 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 C 0.11 2.45 5.55 -67.93 -0.38 2.08 16 21 C -0.15 -3.02 8.43 -26.73 -0.23 -3.24 16 22 C -0.21 -4.17 10.41 -26.73 -0.28 -4.45 16 23 C -0.13 -2.57 8.05 -38.99 -0.31 -2.88 16 24 C 0.08 1.32 11.16 -17.63 -0.20 1.12 16 25 N -0.48 -8.04 4.61 -12.17 -0.06 -8.10 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.27 5.43 -51.93 -0.28 0.99 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.27 5.44 -51.93 -0.28 0.99 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.14 2.71 7.92 -52.49 -0.42 2.29 16 36 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 37 H 0.11 2.51 7.82 -51.93 -0.41 2.11 16 38 H 0.11 2.35 5.13 -51.92 -0.27 2.09 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.19 3.90 4.51 -52.48 -0.24 3.67 16 43 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -26.45 354.55 -9.33 -35.78 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.01 Total: 11.75 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.84 Total: -8.49 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.31 Total: -37.28 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -4.98 Total: 12.23 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.24 Total: -3.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.45 -9.33 -35.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272293947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.904 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds