Wall clock time and date at job start Tue Mar 31 2020 12:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46961 * 2 1 4 4 C 1.52998 * 109.46782 * 240.00323 * 2 1 3 5 5 S 1.81396 * 109.47086 * 120.00082 * 2 1 3 6 6 C 1.76194 * 103.00112 * 60.00067 * 5 2 1 7 7 C 1.39136 * 119.65024 * 179.72583 * 6 5 2 8 8 C 1.39562 * 118.92112 * 180.29741 * 7 6 5 9 9 C 1.48005 * 120.88853 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00006 * 335.24934 * 9 8 7 11 11 N 1.34778 * 120.00544 * 155.24579 * 9 8 7 12 12 C 1.36804 * 119.99434 * 6.40206 * 11 9 8 13 13 H 1.07994 * 120.00528 * 309.05797 * 12 11 9 14 14 C 1.39104 * 119.99598 * 129.05817 * 12 11 9 15 15 N 1.31318 * 120.00117 * 342.41326 * 14 12 11 16 16 Si 1.86800 * 119.99853 * 162.41042 * 14 12 11 17 17 H 1.48498 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46966 * 119.99917 * 16 14 12 19 19 H 1.48493 * 109.47332 * 240.00281 * 16 14 12 20 20 C 1.46500 * 120.00433 * 186.40776 * 11 9 8 21 21 C 1.53000 * 117.49907 * 179.17572 * 20 11 9 22 22 C 1.52997 * 117.49877 * 110.55271 * 20 11 9 23 23 C 1.40133 * 118.22870 * 359.97438 * 8 7 6 24 24 C 1.37901 * 119.17772 * 359.97438 * 23 8 7 25 25 N 1.31939 * 121.01722 * 0.02681 * 24 23 8 26 26 H 1.08999 * 109.47111 * 300.00014 * 1 2 3 27 27 H 1.09004 * 109.47334 * 59.99788 * 1 2 3 28 28 H 1.08991 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47270 * 300.00251 * 3 2 1 31 31 H 1.08999 * 109.47219 * 60.00053 * 3 2 1 32 32 H 1.09002 * 109.47265 * 299.99429 * 4 2 1 33 33 H 1.09000 * 109.47342 * 60.00357 * 4 2 1 34 34 H 1.09008 * 109.46486 * 180.02562 * 4 2 1 35 35 H 1.07998 * 120.53970 * 0.24941 * 7 6 5 36 36 H 0.97005 * 120.00257 * 185.05329 * 15 14 12 37 37 H 1.08994 * 115.54471 * 324.87937 * 20 11 9 38 38 H 1.09007 * 117.49722 * 359.97438 * 21 20 11 39 39 H 1.09001 * 117.50055 * 145.01779 * 21 20 11 40 40 H 1.09002 * 117.50084 * 214.97554 * 22 20 11 41 41 H 1.09002 * 117.49972 * 359.97438 * 22 20 11 42 42 H 1.08004 * 120.41253 * 180.02562 * 23 8 7 43 43 H 1.08005 * 119.49768 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 2.1347 -0.8551 1.4811 6 6 1.4575 -2.4726 1.3091 7 6 1.7186 -3.4349 2.2795 8 6 1.1798 -4.7130 2.1249 9 6 1.4302 -5.7699 3.1302 10 8 2.4201 -5.7172 3.8339 11 7 0.5607 -6.7908 3.2658 12 6 -0.4816 -6.9223 2.3895 13 1 -1.1282 -6.0809 2.1892 14 6 -0.7085 -8.1400 1.7566 15 7 0.2411 -9.0462 1.7164 16 14 -2.3641 -8.4863 0.9637 17 1 -3.2552 -7.3124 1.1457 18 1 -2.1744 -8.7430 -0.4865 19 1 -2.9786 -9.6783 1.6013 20 6 0.7317 -7.7594 4.3515 21 6 -0.2993 -8.8843 4.4635 22 6 -0.2990 -7.7426 5.4820 23 6 0.3953 -4.9689 0.9923 24 6 0.1842 -3.9582 0.0782 25 7 0.7090 -2.7607 0.2555 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.3291 -3.1969 3.1381 36 1 0.1094 -9.8648 1.2129 37 1 1.7633 -7.9938 4.6141 38 1 -1.1051 -8.9034 3.7296 39 1 0.0539 -9.8591 4.7999 40 1 0.0544 -7.9664 6.4886 41 1 -1.1040 -7.0106 5.4183 42 1 -0.0394 -5.9455 0.8376 43 1 -0.4199 -4.1497 -0.7963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272293947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:46 Heat of formation + Delta-G solvation = 32.589603 kcal Electronic energy + Delta-G solvation = -24965.558389 eV Core-core repulsion = 21524.234247 eV Total energy + Delta-G solvation = -3441.324142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48920 -40.06732 -38.01517 -37.12284 -35.34966 -33.71764 -32.91388 -32.12235 -28.19360 -28.16921 -27.33511 -25.87456 -24.55296 -23.10492 -22.73434 -21.54743 -21.32806 -19.64494 -18.52863 -17.70186 -17.20010 -16.89053 -16.62832 -16.40874 -15.86031 -15.78949 -15.25898 -15.11645 -15.09503 -14.97390 -14.67105 -14.41184 -13.89963 -13.61654 -13.38044 -13.22927 -13.10208 -12.84622 -12.76743 -12.50841 -12.33898 -12.12550 -12.07762 -11.99104 -11.96961 -11.56765 -11.22016 -10.95640 -10.91762 -10.77183 -10.67150 -10.64691 -10.21071 -9.24602 -8.50740 -8.32730 -6.18484 -0.13548 0.08773 0.48305 1.29288 1.42879 1.50962 1.61530 1.98344 2.23906 2.66021 2.81461 2.93340 3.34010 3.62948 3.85610 3.87456 3.92828 4.08158 4.15132 4.17946 4.23624 4.30514 4.39060 4.55731 4.69749 4.73055 4.75959 4.81684 4.88070 4.89519 4.95982 4.96589 5.00516 5.05599 5.20305 5.23915 5.37566 5.40715 5.44182 5.46232 5.54298 5.75336 6.05417 6.32968 6.72060 7.00400 7.39286 7.88760 8.69653 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.003874 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.850398 B = 7225.388333 C = 8192.854176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.147 4.147 5 S -0.100 6.100 6 C 0.104 3.896 7 C -0.123 4.123 8 C -0.060 4.060 9 C 0.501 3.499 10 O -0.630 6.630 11 N -0.403 5.403 12 C -0.374 4.374 13 H 0.099 0.901 14 C 0.034 3.966 15 N -0.867 5.867 16 Si 0.964 3.036 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.276 1.276 20 C 0.068 3.932 21 C -0.134 4.134 22 C -0.186 4.186 23 C -0.141 4.141 24 C 0.094 3.906 25 N -0.467 5.467 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.127 0.873 36 H 0.277 0.723 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.182 0.818 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 12.331 -6.071 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.187 4.187 4 C -0.206 4.206 5 S 0.140 5.860 6 C -0.143 4.143 7 C -0.150 4.150 8 C -0.072 4.072 9 C 0.291 3.709 10 O -0.519 6.519 11 N -0.118 5.118 12 C -0.501 4.501 13 H 0.116 0.884 14 C -0.174 4.174 15 N -0.500 5.500 16 Si 0.786 3.214 17 H -0.177 1.177 18 H -0.196 1.196 19 H -0.201 1.201 20 C -0.036 4.036 21 C -0.172 4.172 22 C -0.224 4.224 23 C -0.163 4.163 24 C -0.065 4.065 25 N -0.180 5.180 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.106 0.894 42 H 0.199 0.801 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.784 13.270 -5.492 14.629 hybrid contribution -0.839 -1.982 -0.311 2.174 sum -3.622 11.288 -5.803 13.199 Atomic orbital electron populations 1.22186 0.91936 1.03883 1.02516 1.22898 0.99531 0.98060 0.93554 1.21742 1.01748 0.91226 1.03935 1.22189 1.00717 1.01904 0.95767 1.85397 1.65085 1.01066 1.34428 1.22789 0.99245 0.98702 0.93607 1.21647 1.00903 0.92260 1.00228 1.20191 0.97592 0.93196 0.96234 1.18803 0.82695 0.85084 0.84284 1.90575 1.30102 1.80600 1.50580 1.42782 1.23539 1.21575 1.23939 1.19574 1.07704 0.99540 1.23237 0.88411 1.26141 1.00446 0.95192 0.95617 1.70047 1.33245 1.09365 1.37298 0.85331 0.78569 0.79240 0.78250 1.17712 1.19614 1.20139 1.21309 0.94473 0.96511 0.91341 1.22968 1.01277 0.92517 1.00428 1.23389 1.01960 1.02264 0.94829 1.23856 0.95852 1.04171 0.92467 1.23287 0.96906 0.87345 0.98933 1.67884 1.09072 1.21880 1.19212 0.92642 0.90224 0.91246 0.91675 0.88679 0.91582 0.91346 0.90175 0.92757 0.85547 0.91336 0.89804 0.88554 0.88941 0.87334 0.89424 0.80121 0.78887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.27 71.98 0.60 -2.55 16 2 C -0.03 -0.67 0.86 -10.79 -0.01 -0.68 16 3 C -0.13 -2.06 8.48 71.98 0.61 -1.45 16 4 C -0.15 -3.22 8.27 71.98 0.60 -2.62 16 5 S -0.10 -2.90 20.85 -56.49 -1.18 -4.08 16 6 C 0.10 3.66 6.67 84.82 0.57 4.22 16 7 C -0.12 -5.07 9.42 22.81 0.21 -4.85 16 8 C -0.06 -2.68 5.73 -19.91 -0.11 -2.80 16 9 C 0.50 25.99 7.51 86.83 0.65 26.64 16 10 O -0.63 -36.01 16.50 -3.93 -0.06 -36.08 16 11 N -0.40 -20.09 2.72 -616.23 -1.68 -21.77 16 12 C -0.37 -17.27 5.29 84.13 0.45 -16.83 16 13 H 0.10 4.38 6.35 -2.91 -0.02 4.36 16 14 C 0.03 1.52 2.85 84.98 0.24 1.76 16 15 N -0.87 -42.08 11.90 21.69 0.26 -41.82 16 16 Si 0.96 34.54 29.30 68.60 2.01 36.55 16 17 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 18 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.28 -9.96 7.11 99.48 0.71 -9.25 16 20 C 0.07 3.22 5.55 44.99 0.25 3.47 16 21 C -0.13 -5.53 8.43 30.59 0.26 -5.27 16 22 C -0.19 -7.18 10.41 30.59 0.32 -6.86 16 23 C -0.14 -5.50 8.05 22.65 0.18 -5.32 16 24 C 0.09 2.98 11.16 84.60 0.94 3.93 16 25 N -0.47 -14.99 4.61 -192.41 -0.89 -15.88 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 1.80 5.43 -2.39 -0.01 1.78 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.80 5.44 -2.39 -0.01 1.79 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.13 5.34 7.92 -2.91 -0.02 5.32 16 36 H 0.28 12.61 8.31 -92.70 -0.77 11.84 16 37 H 0.08 4.24 7.82 -2.39 -0.02 4.22 16 38 H 0.10 4.19 5.13 -2.38 -0.01 4.18 16 39 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.09 3.38 8.14 -2.39 -0.02 3.37 16 42 H 0.18 7.44 4.51 -2.91 -0.01 7.43 16 43 H 0.19 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -59.55 354.55 5.23 -54.32 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 1.02 Total: 37.96 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.75 Total: -9.21 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.31 Total: -79.46 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.06 Total: -36.08 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.01 Total: 36.55 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.18 Total: -4.08 kcal Total: -59.55 5.23 -54.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272293947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.908 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds