Wall clock time and date at job start Tue Mar 31 2020 13:01:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.47129 * 2 1
4 4 H 1.09004 * 109.47006 * 304.99931 * 3 2 1
5 5 C 1.50699 * 109.47066 * 185.00218 * 3 2 1
6 6 H 1.07999 * 119.99531 * 239.99682 * 5 3 2
7 7 C 1.37875 * 120.00201 * 59.99978 * 5 3 2
8 8 N 1.31520 * 119.99784 * 359.97438 * 7 5 3
9 9 Si 1.86796 * 120.00160 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46769 * 89.99907 * 9 7 5
11 11 H 1.48494 * 109.47430 * 210.00186 * 9 7 5
12 12 H 1.48504 * 109.47056 * 330.00158 * 9 7 5
13 13 N 1.46493 * 109.46921 * 64.99975 * 3 2 1
14 14 C 1.34783 * 120.00389 * 275.00105 * 13 3 2
15 15 O 1.21598 * 119.99385 * 0.02562 * 14 13 3
16 16 C 1.47517 * 120.00066 * 180.02562 * 14 13 3
17 17 C 1.36598 * 125.76908 * 179.97438 * 16 14 13
18 18 N 1.34817 * 106.83864 * 179.97438 * 17 16 14
19 19 C 1.46502 * 126.59320 * 180.02562 * 18 17 16
20 20 C 1.50697 * 109.47245 * 125.00223 * 19 18 17
21 21 N 1.29945 * 126.28567 * 270.02822 * 20 19 18
22 22 O 1.21304 * 110.24811 * 179.68452 * 21 20 19
23 23 C 1.33639 * 109.81079 * 0.46470 * 22 21 20
24 24 C 1.50706 * 126.55140 * 179.80665 * 23 22 21
25 25 N 1.31134 * 106.89898 * 359.53961 * 23 22 21
26 26 N 1.40205 * 106.81117 * 0.26773 * 18 17 16
27 27 N 1.28764 * 108.36897 * 359.54575 * 26 18 17
28 28 H 1.09001 * 109.46852 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.46946 * 299.99801 * 1 2 3
30 30 H 1.09004 * 109.47200 * 59.99922 * 1 2 3
31 31 H 1.09008 * 109.46965 * 240.00230 * 2 1 3
32 32 H 1.08995 * 109.47266 * 120.00308 * 2 1 3
33 33 H 0.97004 * 119.99480 * 179.97438 * 8 7 5
34 34 H 0.97005 * 120.00172 * 95.00361 * 13 3 2
35 35 H 1.07999 * 126.57963 * 359.97438 * 17 16 14
36 36 H 1.09002 * 109.47286 * 5.00278 * 19 18 17
37 37 H 1.08999 * 109.47143 * 245.00484 * 19 18 17
38 38 H 1.09001 * 109.46953 * 269.68439 * 24 23 22
39 39 H 1.09000 * 109.47318 * 29.68037 * 24 23 22
40 40 H 1.09000 * 109.47161 * 149.68668 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8419
5 6 3.5419 1.4443 -0.1239
6 1 4.1472 1.8889 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3366 -2.1729
9 14 6.0049 0.8813 -1.3819
10 1 6.5548 -0.3502 -0.7603
11 1 6.3829 0.9225 -2.8173
12 1 6.5569 2.0739 -0.6903
13 7 1.6525 2.0974 1.2518
14 6 0.4351 2.6644 1.3670
15 8 -0.3416 2.6318 0.4320
16 6 0.0451 3.3243 2.6274
17 6 -1.1525 3.9340 2.8721
18 7 -1.1006 4.4044 4.1344
19 6 -2.1583 5.1329 4.8392
20 6 -2.4767 4.4292 6.1331
21 7 -3.3628 3.4938 6.3020
22 8 -3.3732 3.1294 7.4590
23 6 -2.4744 3.8257 8.1613
24 6 -2.1779 3.6823 9.6320
25 7 -1.8955 4.6534 7.3251
26 7 0.1625 4.0672 4.6411
27 7 0.8079 3.4270 3.7292
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 3.8293 -0.0612 -2.9499
34 1 2.2720 2.1231 1.9978
35 1 -1.9819 4.0222 2.1859
36 1 -3.0519 5.1692 4.2160
37 1 -1.8216 6.1478 5.0508
38 1 -2.8169 4.3592 10.1991
39 1 -2.3701 2.6554 9.9429
40 1 -1.1325 3.9286 9.8176
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000280371712.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:30
Heat of formation + Delta-G solvation = 131.625149 kcal
Electronic energy + Delta-G solvation = -26022.607844 eV
Core-core repulsion = 22071.577743 eV
Total energy + Delta-G solvation = -3951.030102 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.138 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-46.12787 -42.13569 -38.73129 -36.85797 -35.12095 -35.03103 -33.58298 -32.30560
-31.19638 -30.49949 -29.51580 -28.63031 -26.90413 -24.35522 -23.71493 -23.03209
-22.49138 -21.69052 -20.28442 -19.30622 -18.77960 -18.29935 -17.79235 -16.59087
-16.25011 -15.64724 -15.45562 -15.30379 -14.80083 -14.63220 -14.34438 -14.08261
-13.97997 -13.67530 -13.54672 -13.10383 -12.64147 -12.60285 -12.17203 -12.06998
-11.97643 -11.55094 -11.47307 -11.25270 -11.18471 -10.94029 -10.78011 -10.58598
-10.45980 -10.28366 -10.14042 -9.61208 -9.24600 -9.16170 -8.99263 -8.45728
-7.78679 -6.07683 -4.16224 0.57739 1.09251 1.39229 2.00928 2.21755
2.32248 2.94887 3.29282 3.32464 3.35790 3.39096 3.93155 3.95920
4.20647 4.30791 4.34796 4.42949 4.62802 4.73593 4.77739 4.95219
4.99131 5.22533 5.25365 5.26978 5.31464 5.46385 6.00651 6.20142
6.43207 6.50235 6.69558 7.09465 7.22189 7.39294 7.46279 7.61335
7.66423 7.76720 7.92328 8.03129 8.21667 8.71244 8.81146 9.12220
9.50498 10.97788
Molecular weight = 320.14amu
Principal moments of inertia in cm(-1)
A = 0.023456 B = 0.002519 C = 0.002443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.456724 B =11112.254426 C =11460.610990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.128 4.128
3 C 0.270 3.730
4 H 0.052 0.948
5 C -0.532 4.532
6 H 0.063 0.937
7 C 0.066 3.934
8 N -0.883 5.883
9 Si 0.901 3.099
10 H -0.279 1.279
11 H -0.286 1.286
12 H -0.273 1.273
13 N -0.688 5.688
14 C 0.586 3.414
15 O -0.547 6.547
16 C -0.083 4.083
17 C 0.089 3.911
18 N -0.374 5.374
19 C 0.225 3.775
20 C 0.149 3.851
21 N -0.362 5.362
22 O 0.087 5.913
23 C 0.183 3.817
24 C -0.063 4.063
25 N -0.460 5.460
26 N -0.059 5.059
27 N -0.200 5.200
28 H 0.023 0.977
29 H 0.037 0.963
30 H 0.050 0.950
31 H 0.101 0.899
32 H 0.032 0.968
33 H 0.264 0.736
34 H 0.397 0.603
35 H 0.206 0.794
36 H 0.133 0.867
37 H 0.130 0.870
38 H 0.104 0.896
39 H 0.100 0.900
40 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.533 8.833 21.195 27.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.167 4.167
3 C 0.168 3.832
4 H 0.070 0.930
5 C -0.570 4.570
6 H 0.081 0.919
7 C -0.137 4.137
8 N -0.521 5.521
9 Si 0.729 3.271
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.198 1.198
13 N -0.334 5.334
14 C 0.368 3.632
15 O -0.425 6.425
16 C -0.221 4.221
17 C -0.066 4.066
18 N -0.161 5.161
19 C 0.101 3.899
20 C -0.125 4.125
21 N -0.067 5.067
22 O 0.024 5.976
23 C -0.037 4.037
24 C -0.121 4.121
25 N -0.194 5.194
26 N -0.039 5.039
27 N -0.074 5.074
28 H 0.042 0.958
29 H 0.056 0.944
30 H 0.070 0.930
31 H 0.119 0.881
32 H 0.051 0.949
33 H 0.074 0.926
34 H 0.230 0.770
35 H 0.223 0.777
36 H 0.151 0.849
37 H 0.148 0.852
38 H 0.122 0.878
39 H 0.118 0.882
40 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -14.340 8.815 20.720 26.696
hybrid contribution 0.472 -0.072 -0.329 0.580
sum -13.868 8.744 20.392 26.164
Atomic orbital electron populations
1.21843 0.98387 0.98083 1.01166 1.21949 0.92611 0.99710 1.02435
1.18871 0.94411 0.89238 0.80644 0.93026 1.21245 0.90633 1.38873
1.06299 0.91920 1.24873 0.98621 0.94813 0.95352 1.69899 1.35081
1.37739 1.09373 0.86445 0.84890 0.78504 0.77272 1.20552 1.21124
1.19813 1.46376 1.13969 1.54224 1.18833 1.16746 0.83395 0.78970
0.84093 1.90776 1.51907 1.61154 1.38704 1.22037 0.93303 1.09835
0.96963 1.23407 1.00800 0.95627 0.86756 1.50247 1.13933 1.41180
1.10780 1.19857 0.89639 0.94281 0.86085 1.25450 0.93795 0.96858
0.96396 1.74691 1.21119 1.14128 0.96800 1.85312 1.48274 1.49789
1.14259 1.28936 0.87368 0.88060 0.99335 1.20460 1.05236 1.05453
0.80981 1.71923 1.24639 1.23420 0.99378 1.82083 0.87771 1.16205
1.17827 1.74687 1.24613 1.09153 0.98949 0.95821 0.94397 0.93047
0.88119 0.94918 0.92610 0.76986 0.77708 0.84934 0.85205 0.87796
0.88182 0.87356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16
2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.34 16
3 C 0.27 6.96 2.24 -69.08 -0.15 6.80 16
4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16
5 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16
6 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16
7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16
8 N -0.88 -24.92 11.29 55.43 0.63 -24.30 16
9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16
10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
13 N -0.69 -15.39 5.02 -55.98 -0.28 -15.67 16
14 C 0.59 12.31 6.39 -12.48 -0.08 12.23 16
15 O -0.55 -12.55 14.00 5.28 0.07 -12.47 16
16 C -0.08 -1.45 6.99 -83.55 -0.58 -2.04 16
17 C 0.09 1.19 11.27 -16.83 -0.19 1.00 16
18 N -0.37 -4.66 3.68 -62.24 -0.23 -4.89 16
19 C 0.22 1.85 7.16 -5.19 -0.04 1.81 16
20 C 0.15 1.55 7.67 -156.38 -1.20 0.35 16
21 N -0.36 -4.02 12.16 30.90 0.38 -3.64 16
22 O 0.09 0.82 11.31 18.11 0.20 1.02 16
23 C 0.18 1.41 8.51 -13.05 -0.11 1.30 16
24 C -0.06 -0.16 10.51 36.01 0.38 0.22 16
25 N -0.46 -4.73 11.55 -9.87 -0.11 -4.85 16
26 N -0.06 -0.94 13.64 60.35 0.82 -0.12 16
27 N -0.20 -3.57 12.04 32.85 0.40 -3.18 16
28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16
30 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16
31 H 0.10 2.74 5.95 -51.92 -0.31 2.43 16
32 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16
34 H 0.40 8.39 8.23 -40.82 -0.34 8.05 16
35 H 0.21 2.07 8.06 -52.49 -0.42 1.64 16
36 H 0.13 0.63 8.08 -51.93 -0.42 0.21 16
37 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16
39 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16
40 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16
LS Contribution 350.55 15.07 5.28 5.28
Total: -1.00 -35.06 350.55 -4.72 -39.79
By element:
Atomic # 1 Polarization: 9.14 SS G_CDS: -4.66 Total: 4.49 kcal
Atomic # 6 Polarization: 4.73 SS G_CDS: -2.20 Total: 2.53 kcal
Atomic # 7 Polarization: -58.25 SS G_CDS: 1.60 Total: -56.65 kcal
Atomic # 8 Polarization: -11.73 SS G_CDS: 0.28 Total: -11.45 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -35.06 -4.72 -39.79 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000280371712.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.412 kcal
(2) G-P(sol) polarization free energy of solvation -35.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) 131.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds