Wall clock time and date at job start Tue Mar 31 2020 13:01:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.47129 * 2 1
4 4 H 1.09004 * 109.47006 * 304.99931 * 3 2 1
5 5 C 1.50699 * 109.47066 * 185.00218 * 3 2 1
6 6 H 1.07999 * 119.99531 * 239.99682 * 5 3 2
7 7 C 1.37875 * 120.00201 * 59.99978 * 5 3 2
8 8 N 1.31520 * 119.99784 * 359.97438 * 7 5 3
9 9 Si 1.86796 * 120.00160 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46769 * 89.99907 * 9 7 5
11 11 H 1.48494 * 109.47430 * 210.00186 * 9 7 5
12 12 H 1.48504 * 109.47056 * 330.00158 * 9 7 5
13 13 N 1.46493 * 109.46921 * 64.99975 * 3 2 1
14 14 C 1.34783 * 120.00389 * 275.00105 * 13 3 2
15 15 O 1.21598 * 119.99385 * 0.02562 * 14 13 3
16 16 C 1.47517 * 120.00066 * 180.02562 * 14 13 3
17 17 C 1.36598 * 125.76908 * 179.97438 * 16 14 13
18 18 N 1.34817 * 106.83864 * 179.97438 * 17 16 14
19 19 C 1.46502 * 126.59320 * 180.02562 * 18 17 16
20 20 C 1.50697 * 109.47245 * 125.00223 * 19 18 17
21 21 N 1.29945 * 126.28567 * 270.02822 * 20 19 18
22 22 O 1.21304 * 110.24811 * 179.68452 * 21 20 19
23 23 C 1.33639 * 109.81079 * 0.46470 * 22 21 20
24 24 C 1.50706 * 126.55140 * 179.80665 * 23 22 21
25 25 N 1.31134 * 106.89898 * 359.53961 * 23 22 21
26 26 N 1.40205 * 106.81117 * 0.26773 * 18 17 16
27 27 N 1.28764 * 108.36897 * 359.54575 * 26 18 17
28 28 H 1.09001 * 109.46852 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.46946 * 299.99801 * 1 2 3
30 30 H 1.09004 * 109.47200 * 59.99922 * 1 2 3
31 31 H 1.09008 * 109.46965 * 240.00230 * 2 1 3
32 32 H 1.08995 * 109.47266 * 120.00308 * 2 1 3
33 33 H 0.97004 * 119.99480 * 179.97438 * 8 7 5
34 34 H 0.97005 * 120.00172 * 95.00361 * 13 3 2
35 35 H 1.07999 * 126.57963 * 359.97438 * 17 16 14
36 36 H 1.09002 * 109.47286 * 5.00278 * 19 18 17
37 37 H 1.08999 * 109.47143 * 245.00484 * 19 18 17
38 38 H 1.09001 * 109.46953 * 269.68439 * 24 23 22
39 39 H 1.09000 * 109.47318 * 29.68037 * 24 23 22
40 40 H 1.09000 * 109.47161 * 149.68668 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8419
5 6 3.5419 1.4443 -0.1239
6 1 4.1472 1.8889 0.6522
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3366 -2.1729
9 14 6.0049 0.8813 -1.3819
10 1 6.5548 -0.3502 -0.7603
11 1 6.3829 0.9225 -2.8173
12 1 6.5569 2.0739 -0.6903
13 7 1.6525 2.0974 1.2518
14 6 0.4351 2.6644 1.3670
15 8 -0.3416 2.6318 0.4320
16 6 0.0451 3.3243 2.6274
17 6 -1.1525 3.9340 2.8721
18 7 -1.1006 4.4044 4.1344
19 6 -2.1583 5.1329 4.8392
20 6 -2.4767 4.4292 6.1331
21 7 -3.3628 3.4938 6.3020
22 8 -3.3732 3.1294 7.4590
23 6 -2.4744 3.8257 8.1613
24 6 -2.1779 3.6823 9.6320
25 7 -1.8955 4.6534 7.3251
26 7 0.1625 4.0672 4.6411
27 7 0.8079 3.4270 3.7292
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 1.8934 -0.5138 -0.8901
32 1 1.8934 -0.5139 0.8899
33 1 3.8293 -0.0612 -2.9499
34 1 2.2720 2.1231 1.9978
35 1 -1.9819 4.0222 2.1859
36 1 -3.0519 5.1692 4.2160
37 1 -1.8216 6.1478 5.0508
38 1 -2.8169 4.3592 10.1991
39 1 -2.3701 2.6554 9.9429
40 1 -1.1325 3.9286 9.8176
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000280371712.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:01:29
Heat of formation + Delta-G solvation = 103.746665 kcal
Electronic energy + Delta-G solvation = -26023.816746 eV
Core-core repulsion = 22071.577743 eV
Total energy + Delta-G solvation = -3952.239003 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.138 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-46.80862 -43.32099 -40.44859 -37.60287 -36.94743 -35.92961 -34.43181 -34.16846
-32.93518 -31.86462 -30.05912 -29.53595 -28.79072 -25.45933 -25.08049 -24.38339
-23.71752 -22.61436 -21.86513 -21.07414 -19.75233 -19.33243 -18.72142 -18.11003
-17.35794 -17.20312 -17.01069 -16.26315 -16.20311 -16.01209 -15.71717 -15.20823
-15.02127 -14.58421 -14.23426 -14.20474 -14.04252 -13.80937 -13.45513 -13.26913
-13.16444 -13.02842 -12.91554 -12.84179 -12.66435 -12.38353 -12.24353 -12.17109
-12.05906 -11.64868 -11.59125 -11.11392 -11.06103 -10.95834 -10.52877 -10.42706
-9.64807 -8.15751 -6.32253 -0.12907 0.04738 0.62212 0.63300 1.39278
1.45201 1.45389 1.56296 1.78977 2.28343 2.33270 2.38719 2.54429
2.76617 3.13372 3.18559 3.49528 3.71482 3.81369 3.91707 4.10232
4.27564 4.41691 4.50974 4.56144 4.58320 4.63324 4.65024 4.77929
4.87258 5.08078 5.10898 5.22595 5.26681 5.44052 5.54022 5.60675
5.79089 5.89634 6.16414 6.71164 6.73383 6.95609 6.98836 7.30291
7.46666 8.89654
Molecular weight = 320.14amu
Principal moments of inertia in cm(-1)
A = 0.023456 B = 0.002519 C = 0.002443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.456724 B =11112.254426 C =11460.610990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.122 4.122
3 C 0.279 3.721
4 H 0.010 0.990
5 C -0.551 4.551
6 H 0.065 0.935
7 C 0.019 3.981
8 N -0.911 5.911
9 Si 0.969 3.031
10 H -0.272 1.272
11 H -0.282 1.282
12 H -0.269 1.269
13 N -0.693 5.693
14 C 0.589 3.411
15 O -0.571 6.571
16 C -0.116 4.116
17 C 0.119 3.881
18 N -0.357 5.357
19 C 0.214 3.786
20 C 0.139 3.861
21 N -0.386 5.386
22 O 0.079 5.921
23 C 0.193 3.807
24 C -0.063 4.063
25 N -0.493 5.493
26 N -0.075 5.075
27 N -0.223 5.223
28 H 0.046 0.954
29 H 0.039 0.961
30 H 0.034 0.966
31 H 0.077 0.923
32 H 0.035 0.965
33 H 0.266 0.734
34 H 0.402 0.598
35 H 0.243 0.757
36 H 0.173 0.827
37 H 0.154 0.846
38 H 0.130 0.870
39 H 0.120 0.880
40 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.292 9.592 23.051 29.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.161 4.161
3 C 0.176 3.824
4 H 0.027 0.973
5 C -0.589 4.589
6 H 0.083 0.917
7 C -0.181 4.181
8 N -0.549 5.549
9 Si 0.794 3.206
10 H -0.197 1.197
11 H -0.208 1.208
12 H -0.193 1.193
13 N -0.340 5.340
14 C 0.374 3.626
15 O -0.451 6.451
16 C -0.255 4.255
17 C -0.037 4.037
18 N -0.144 5.144
19 C 0.093 3.907
20 C -0.134 4.134
21 N -0.093 5.093
22 O 0.018 5.982
23 C -0.026 4.026
24 C -0.121 4.121
25 N -0.227 5.227
26 N -0.056 5.056
27 N -0.097 5.097
28 H 0.065 0.935
29 H 0.058 0.942
30 H 0.053 0.947
31 H 0.095 0.905
32 H 0.054 0.946
33 H 0.075 0.925
34 H 0.236 0.764
35 H 0.259 0.741
36 H 0.190 0.810
37 H 0.172 0.828
38 H 0.148 0.852
39 H 0.138 0.862
40 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -15.114 9.597 22.649 28.871
hybrid contribution 0.583 -0.236 -0.773 0.997
sum -14.531 9.360 21.876 27.880
Atomic orbital electron populations
1.21679 0.96659 0.99316 1.00414 1.21802 0.94093 0.98925 1.01270
1.18485 0.93775 0.89342 0.80817 0.97251 1.21539 0.91468 1.39174
1.06710 0.91707 1.25707 1.03218 0.94281 0.94912 1.70030 1.36934
1.38172 1.09798 0.85395 0.79245 0.78740 0.77265 1.19738 1.20792
1.19311 1.46185 1.15002 1.54923 1.17873 1.17063 0.82381 0.78139
0.85061 1.90750 1.52331 1.61976 1.40029 1.21612 0.95350 1.12539
0.95974 1.23855 0.99950 0.92735 0.87149 1.50459 1.13543 1.39891
1.10471 1.20510 0.89880 0.94378 0.85890 1.25783 0.93682 0.96823
0.97137 1.74667 1.22095 1.14850 0.97718 1.85277 1.48855 1.50057
1.14059 1.29899 0.85703 0.86367 1.00636 1.20812 1.05912 1.07424
0.77950 1.71947 1.25837 1.24932 0.99950 1.81996 0.89325 1.16491
1.17753 1.74656 1.25685 1.10054 0.99283 0.93507 0.94155 0.94661
0.90488 0.94630 0.92461 0.76380 0.74077 0.80957 0.82818 0.85198
0.86182 0.87014
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.64 8.51 71.98 0.61 -5.02 16
2 C -0.12 -6.20 5.45 30.60 0.17 -6.04 16
3 C 0.28 14.83 2.24 44.25 0.10 14.93 16
4 H 0.01 0.59 7.58 -2.38 -0.02 0.57 16
5 C -0.55 -30.44 8.73 25.60 0.22 -30.21 16
6 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16
7 C 0.02 1.06 5.29 84.65 0.45 1.51 16
8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16
9 Si 0.97 43.34 29.54 68.60 2.03 45.37 16
10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
13 N -0.69 -31.78 5.02 -449.28 -2.25 -34.03 16
14 C 0.59 25.00 6.39 86.69 0.55 25.56 16
15 O -0.57 -26.47 14.00 -4.02 -0.06 -26.52 16
16 C -0.12 -3.99 6.99 40.81 0.29 -3.71 16
17 C 0.12 2.94 11.27 83.85 0.95 3.89 16
18 N -0.36 -8.10 3.68 -350.83 -1.29 -9.39 16
19 C 0.21 2.91 7.16 85.63 0.61 3.52 16
20 C 0.14 2.64 7.67 138.46 1.06 3.71 16
21 N -0.39 -8.00 12.16 -60.33 -0.73 -8.73 16
22 O 0.08 1.39 11.31 74.87 0.85 2.23 16
23 C 0.19 2.66 8.51 88.38 0.75 3.41 16
24 C -0.06 -0.16 10.51 71.24 0.75 0.59 16
25 N -0.49 -9.41 11.55 -303.20 -3.50 -12.91 16
26 N -0.08 -2.34 13.64 37.02 0.50 -1.83 16
27 N -0.22 -7.91 12.04 -50.00 -0.60 -8.51 16
28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
29 H 0.04 1.79 5.64 -2.39 -0.01 1.78 16
30 H 0.03 1.69 7.84 -2.38 -0.02 1.67 16
31 H 0.08 4.30 5.95 -2.38 -0.01 4.29 16
32 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16
33 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16
34 H 0.40 17.43 8.23 -92.70 -0.76 16.66 16
35 H 0.24 4.00 8.06 -2.91 -0.02 3.97 16
36 H 0.17 0.94 8.08 -2.39 -0.02 0.92 16
37 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16
38 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16
39 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16
40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16
Total: -1.00 -78.50 350.55 2.03 -76.47
By element:
Atomic # 1 Polarization: 17.63 SS G_CDS: 0.34 Total: 17.97 kcal
Atomic # 6 Polarization: 5.62 SS G_CDS: 6.51 Total: 12.13 kcal
Atomic # 7 Polarization: -120.01 SS G_CDS: -7.64 Total: -127.64 kcal
Atomic # 8 Polarization: -25.08 SS G_CDS: 0.79 Total: -24.29 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -78.50 2.03 -76.47 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000280371712.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 180.214 kcal
(2) G-P(sol) polarization free energy of solvation -78.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.714 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal
(6) G-S(sol) free energy of system = (1) + (5) 103.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds