Wall clock time and date at job start Tue Mar 31 2020 12:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 H 1.08997 * 109.58114 * 55.27865 * 3 2 1 5 5 C 1.53753 * 109.50828 * 175.78779 * 3 2 1 6 6 N 1.46383 * 109.20546 * 177.55903 * 5 3 2 7 7 C 1.34773 * 119.64903 * 114.91229 * 6 5 3 8 8 O 1.21590 * 119.99903 * 8.58227 * 7 6 5 9 9 N 1.34770 * 120.00223 * 188.58102 * 7 6 5 10 10 C 1.39957 * 120.00329 * 172.09391 * 9 7 6 11 11 C 1.39289 * 119.94396 * 29.40207 * 10 9 7 12 12 C 1.38490 * 120.43230 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.31632 * 359.97438 * 12 11 10 14 14 C 1.40739 * 119.88347 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20513 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00406 * 36.45267 * 15 14 13 17 17 C 1.39937 * 119.99723 * 216.44540 * 15 14 13 18 18 N 1.30831 * 120.00042 * 17.90168 * 17 15 14 19 19 Si 1.86804 * 119.99842 * 197.90009 * 17 15 14 20 20 H 1.48493 * 109.47153 * 90.00025 * 19 17 15 21 21 H 1.48502 * 109.46807 * 210.00290 * 19 17 15 22 22 H 1.48498 * 109.47006 * 329.99877 * 19 17 15 23 23 C 1.38230 * 119.95092 * 209.13168 * 10 9 7 24 24 C 1.46378 * 120.70269 * 294.63444 * 6 5 3 25 25 C 1.53237 * 109.48687 * 65.36730 * 24 6 5 26 26 S 1.81737 * 109.58681 * 295.00162 * 3 2 1 27 27 H 1.08994 * 109.47403 * 59.99916 * 1 2 3 28 28 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47167 * 299.99572 * 1 2 3 30 30 H 1.08998 * 109.47167 * 240.00428 * 2 1 3 31 31 H 1.08994 * 109.47403 * 120.00084 * 2 1 3 32 32 H 1.09004 * 109.61357 * 57.63839 * 5 3 2 33 33 H 1.09003 * 109.61128 * 297.47273 * 5 3 2 34 34 H 0.96996 * 120.00182 * 351.82475 * 9 7 6 35 35 H 1.08006 * 119.78801 * 359.96105 * 11 10 9 36 36 H 1.07998 * 119.84010 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.05449 * 179.97438 * 13 12 11 38 38 H 0.96998 * 119.99744 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.15989 * 359.97438 * 23 10 9 40 40 H 1.09002 * 109.46606 * 185.36558 * 24 6 5 41 41 H 1.08996 * 109.47254 * 305.35999 * 24 6 5 42 42 H 1.08997 * 109.58784 * 62.13342 * 25 24 6 43 43 H 1.08997 * 109.58160 * 182.55214 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6101 1.9819 0.8441 5 6 3.5737 1.4450 0.1064 6 7 4.0584 2.8250 0.0472 7 6 4.6699 3.3635 1.1207 8 8 4.9567 2.6628 2.0721 9 7 4.9636 4.6787 1.1397 10 6 5.4455 5.2713 2.3124 11 6 6.1848 4.5163 3.2199 12 6 6.6670 5.0925 4.3832 13 6 6.4209 6.4197 4.6553 14 6 5.6753 7.1949 3.7476 15 6 5.4189 8.5587 4.0199 16 1 6.1708 9.1631 4.5053 17 6 4.1909 9.1251 3.6602 18 7 3.1653 8.3545 3.4032 19 14 4.0160 10.9815 3.5471 20 1 4.3429 11.4264 2.1686 21 1 2.6199 11.3679 3.8740 22 1 4.9460 11.6258 4.5089 23 6 5.1918 6.6063 2.5657 24 6 3.8913 3.6243 -1.1676 25 6 2.3991 3.8652 -1.4198 26 16 1.5607 2.2582 -1.5518 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9987 0.8749 -0.7197 33 1 3.8756 0.9943 1.0519 34 1 4.8446 5.2138 0.3395 35 1 6.3832 3.4745 3.0151 36 1 7.2388 4.4981 5.0804 37 1 6.7986 6.8646 5.5640 38 1 2.3142 8.7472 3.1535 39 1 4.6227 7.1938 1.8603 40 1 4.3981 4.5815 -1.0452 41 1 4.3215 3.0912 -2.0154 42 1 1.9751 4.4315 -0.5906 43 1 2.2707 4.4215 -2.3483 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334982614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:28 Heat of formation + Delta-G solvation = -2.832065 kcal Electronic energy + Delta-G solvation = -24641.825848 eV Core-core repulsion = 21198.965707 eV Total energy + Delta-G solvation = -3442.860141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44458 -37.80249 -36.46291 -35.13998 -34.26363 -33.18355 -30.95310 -29.70977 -29.45831 -27.87410 -25.18512 -24.19759 -23.56257 -21.67703 -21.30538 -20.92730 -19.39174 -18.40182 -17.42100 -16.65983 -16.14536 -15.57530 -15.45381 -15.12619 -14.72324 -14.56588 -14.52336 -14.08800 -13.89446 -13.43820 -13.17269 -13.04810 -12.83272 -12.61624 -12.30276 -12.23826 -11.83572 -11.76046 -11.50080 -11.29668 -11.27738 -11.13707 -11.03259 -10.80899 -10.53350 -10.06107 -9.94059 -9.90225 -9.50679 -9.14315 -8.93983 -8.89565 -7.80751 -7.31865 -6.93019 -6.68873 -4.36578 1.51760 2.30966 2.63730 2.75425 2.86549 3.09385 3.12884 3.20611 3.52643 3.97859 4.00787 4.37613 4.60806 4.64191 4.67740 4.82857 4.87070 4.95144 5.09163 5.27402 5.31738 5.48530 5.51488 5.56168 5.60762 5.70019 5.74730 5.89693 6.06723 6.19906 6.36342 6.62944 6.64932 6.73874 6.92529 7.03746 7.14828 7.27564 7.59598 7.74759 7.95231 8.03454 8.23752 8.34017 8.58355 8.85533 8.90207 8.96934 10.28650 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003447 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.532036 B = 8120.120962 C = 9097.163499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.067 4.067 4 H 0.093 0.907 5 C 0.134 3.866 6 N -0.638 5.638 7 C 0.704 3.296 8 O -0.565 6.565 9 N -0.675 5.675 10 C 0.158 3.842 11 C -0.227 4.227 12 C -0.090 4.090 13 C -0.219 4.219 14 C 0.131 3.869 15 C -0.481 4.481 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.804 5.804 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.263 1.263 23 C -0.180 4.180 24 C 0.112 3.888 25 C -0.107 4.107 26 S -0.252 6.252 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.396 0.604 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.277 0.723 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -10.837 -11.983 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.197 4.197 4 H 0.111 0.889 5 C 0.009 3.991 6 N -0.376 5.376 7 C 0.407 3.593 8 O -0.442 6.442 9 N -0.322 5.322 10 C 0.066 3.934 11 C -0.248 4.248 12 C -0.109 4.109 13 C -0.239 4.239 14 C 0.129 3.871 15 C -0.512 4.512 16 H 0.097 0.903 17 C -0.135 4.135 18 N -0.431 5.431 19 Si 0.727 3.273 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.202 4.202 24 C -0.014 4.014 25 C -0.256 4.256 26 S -0.026 6.026 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.232 0.768 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.558 -11.730 -12.185 17.517 hybrid contribution 0.213 1.824 0.437 1.888 sum -4.344 -9.906 -11.749 15.970 Atomic orbital electron populations 1.21803 0.94859 1.01775 1.02677 1.21327 0.96828 0.92766 1.03147 1.23867 0.98919 0.99743 0.97216 0.88892 1.21650 0.90741 0.81910 1.04824 1.47172 1.62891 1.14279 1.13274 1.15914 0.78548 0.82469 0.82414 1.90861 1.57928 1.60228 1.35145 1.42786 1.67752 1.07574 1.14111 1.17484 0.97090 0.92728 0.86140 1.20814 1.06220 1.00279 0.97487 1.20532 0.99282 0.94890 0.96174 1.21187 1.08968 0.93763 0.99976 1.17287 0.88317 0.92811 0.88720 1.19401 1.00206 0.94850 1.36722 0.90343 1.25778 0.95220 0.99918 0.92627 1.69836 1.01070 1.37330 1.34822 0.86416 0.78073 0.83251 0.79531 1.19488 1.20538 1.18718 1.20766 1.07556 0.92529 0.99330 1.21664 0.94769 0.96604 0.88314 1.23909 0.97849 0.97181 1.06685 1.86711 1.69084 1.17368 1.29400 0.91780 0.92440 0.92465 0.90842 0.90222 0.90340 0.87501 0.76786 0.86020 0.88924 0.88729 0.91216 0.87698 0.89317 0.89672 0.89100 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.74 37.16 0.36 -0.96 16 2 C -0.10 -0.89 5.42 -26.73 -0.14 -1.04 16 3 C -0.07 -0.74 2.78 -26.34 -0.07 -0.81 16 4 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 5 C 0.13 1.59 5.56 -3.71 -0.02 1.57 16 6 N -0.64 -8.67 2.78 -179.00 -0.50 -9.17 16 7 C 0.70 12.85 8.12 -86.93 -0.71 12.14 16 8 O -0.57 -12.27 12.68 5.29 0.07 -12.21 16 9 N -0.67 -12.65 5.25 -14.27 -0.07 -12.73 16 10 C 0.16 3.66 6.40 -83.76 -0.54 3.13 16 11 C -0.23 -5.41 8.80 -39.10 -0.34 -5.75 16 12 C -0.09 -2.11 10.02 -39.69 -0.40 -2.50 16 13 C -0.22 -5.45 9.79 -38.84 -0.38 -5.83 16 14 C 0.13 3.48 5.40 -106.85 -0.58 2.90 16 15 C -0.48 -12.71 8.98 -37.74 -0.34 -13.05 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.08 2.03 5.06 -17.34 -0.09 1.95 16 18 N -0.80 -20.99 11.85 55.55 0.66 -20.33 16 19 Si 0.90 18.69 29.60 -169.99 -5.03 13.66 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 23 C -0.18 -4.51 8.57 -38.69 -0.33 -4.84 16 24 C 0.11 1.16 6.16 -3.99 -0.02 1.13 16 25 C -0.11 -1.08 6.67 37.28 0.25 -0.83 16 26 S -0.25 -2.71 20.48 -107.50 -2.20 -4.92 16 27 H 0.06 0.59 7.14 -51.93 -0.37 0.22 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.11 1.44 6.89 -51.93 -0.36 1.08 16 34 H 0.40 6.14 6.22 -40.82 -0.25 5.88 16 35 H 0.12 2.91 5.66 -52.48 -0.30 2.61 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.10 2.64 7.10 -52.48 -0.37 2.27 16 40 H 0.09 0.86 5.54 -51.93 -0.29 0.57 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -30.38 355.57 -11.21 -41.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.14 Total: 11.53 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.35 Total: -12.79 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.09 Total: -42.23 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.20 Total: -4.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.38 -11.21 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334982614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.759 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds