Wall clock time and date at job start Tue Mar 31 2020 12:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 H 1.08997 * 109.58114 * 55.27865 * 3 2 1 5 5 C 1.53753 * 109.50828 * 175.78779 * 3 2 1 6 6 N 1.46383 * 109.20546 * 177.55903 * 5 3 2 7 7 C 1.34773 * 119.64903 * 114.91229 * 6 5 3 8 8 O 1.21590 * 119.99903 * 8.58227 * 7 6 5 9 9 N 1.34770 * 120.00223 * 188.58102 * 7 6 5 10 10 C 1.39957 * 120.00329 * 172.09391 * 9 7 6 11 11 C 1.39289 * 119.94396 * 29.40207 * 10 9 7 12 12 C 1.38490 * 120.43230 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.31632 * 359.97438 * 12 11 10 14 14 C 1.40739 * 119.88347 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20513 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00406 * 36.45267 * 15 14 13 17 17 C 1.39937 * 119.99723 * 216.44540 * 15 14 13 18 18 N 1.30831 * 120.00042 * 17.90168 * 17 15 14 19 19 Si 1.86804 * 119.99842 * 197.90009 * 17 15 14 20 20 H 1.48493 * 109.47153 * 90.00025 * 19 17 15 21 21 H 1.48502 * 109.46807 * 210.00290 * 19 17 15 22 22 H 1.48498 * 109.47006 * 329.99877 * 19 17 15 23 23 C 1.38230 * 119.95092 * 209.13168 * 10 9 7 24 24 C 1.46378 * 120.70269 * 294.63444 * 6 5 3 25 25 C 1.53237 * 109.48687 * 65.36730 * 24 6 5 26 26 S 1.81737 * 109.58681 * 295.00162 * 3 2 1 27 27 H 1.08994 * 109.47403 * 59.99916 * 1 2 3 28 28 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47167 * 299.99572 * 1 2 3 30 30 H 1.08998 * 109.47167 * 240.00428 * 2 1 3 31 31 H 1.08994 * 109.47403 * 120.00084 * 2 1 3 32 32 H 1.09004 * 109.61357 * 57.63839 * 5 3 2 33 33 H 1.09003 * 109.61128 * 297.47273 * 5 3 2 34 34 H 0.96996 * 120.00182 * 351.82475 * 9 7 6 35 35 H 1.08006 * 119.78801 * 359.96105 * 11 10 9 36 36 H 1.07998 * 119.84010 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.05449 * 179.97438 * 13 12 11 38 38 H 0.96998 * 119.99744 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.15989 * 359.97438 * 23 10 9 40 40 H 1.09002 * 109.46606 * 185.36558 * 24 6 5 41 41 H 1.08996 * 109.47254 * 305.35999 * 24 6 5 42 42 H 1.08997 * 109.58784 * 62.13342 * 25 24 6 43 43 H 1.08997 * 109.58160 * 182.55214 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6101 1.9819 0.8441 5 6 3.5737 1.4450 0.1064 6 7 4.0584 2.8250 0.0472 7 6 4.6699 3.3635 1.1207 8 8 4.9567 2.6628 2.0721 9 7 4.9636 4.6787 1.1397 10 6 5.4455 5.2713 2.3124 11 6 6.1848 4.5163 3.2199 12 6 6.6670 5.0925 4.3832 13 6 6.4209 6.4197 4.6553 14 6 5.6753 7.1949 3.7476 15 6 5.4189 8.5587 4.0199 16 1 6.1708 9.1631 4.5053 17 6 4.1909 9.1251 3.6602 18 7 3.1653 8.3545 3.4032 19 14 4.0160 10.9815 3.5471 20 1 4.3429 11.4264 2.1686 21 1 2.6199 11.3679 3.8740 22 1 4.9460 11.6258 4.5089 23 6 5.1918 6.6063 2.5657 24 6 3.8913 3.6243 -1.1676 25 6 2.3991 3.8652 -1.4198 26 16 1.5607 2.2582 -1.5518 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9987 0.8749 -0.7197 33 1 3.8756 0.9943 1.0519 34 1 4.8446 5.2138 0.3395 35 1 6.3832 3.4745 3.0151 36 1 7.2388 4.4981 5.0804 37 1 6.7986 6.8646 5.5640 38 1 2.3142 8.7472 3.1535 39 1 4.6227 7.1938 1.8603 40 1 4.3981 4.5815 -1.0452 41 1 4.3215 3.0912 -2.0154 42 1 1.9751 4.4315 -0.5906 43 1 2.2707 4.4215 -2.3483 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334982614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:27 Heat of formation + Delta-G solvation = -18.268390 kcal Electronic energy + Delta-G solvation = -24642.495217 eV Core-core repulsion = 21198.965707 eV Total energy + Delta-G solvation = -3443.529510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86140 -39.44338 -37.79335 -36.28862 -35.75001 -34.95422 -31.90343 -31.50806 -30.88653 -29.29945 -27.12165 -25.11750 -24.68814 -23.16433 -22.57881 -22.41534 -20.89889 -19.69367 -19.20306 -17.67851 -17.64911 -17.06689 -16.74353 -16.45095 -16.22916 -16.04309 -15.70772 -15.28542 -14.99755 -14.66075 -14.60621 -14.30817 -14.17545 -13.98627 -13.65414 -13.60137 -13.08443 -13.03698 -12.83117 -12.70177 -12.59910 -12.33203 -12.26017 -12.03160 -11.89936 -11.74699 -11.71512 -11.24669 -10.97323 -10.79869 -10.68670 -10.04619 -9.26186 -8.77830 -8.67180 -8.55775 -6.36431 0.65737 0.87894 1.02444 1.40487 1.42195 1.45252 1.51248 1.53057 2.02379 2.24657 2.71489 2.78947 3.49593 3.65314 3.73175 3.81420 3.95103 4.01223 4.13548 4.28800 4.41259 4.51602 4.52227 4.55639 4.69866 4.76203 4.77265 4.82883 4.84437 5.04630 5.06647 5.10541 5.13231 5.17158 5.28585 5.36918 5.40784 5.62069 5.77445 5.93678 6.05536 6.09762 6.37592 6.65045 6.80987 6.95561 7.00434 7.39750 8.41296 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.003447 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.532036 B = 8120.120962 C = 9097.163499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.064 4.064 4 H 0.065 0.935 5 C 0.132 3.868 6 N -0.628 5.628 7 C 0.701 3.299 8 O -0.604 6.604 9 N -0.670 5.670 10 C 0.166 3.834 11 C -0.239 4.239 12 C -0.088 4.088 13 C -0.239 4.239 14 C 0.104 3.896 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.042 3.958 18 N -0.837 5.837 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.260 1.260 23 C -0.194 4.194 24 C 0.108 3.892 25 C -0.104 4.104 26 S -0.248 6.248 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 -10.990 -13.818 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.194 4.194 4 H 0.084 0.916 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.403 3.597 8 O -0.483 6.483 9 N -0.319 5.319 10 C 0.072 3.928 11 C -0.260 4.260 12 C -0.106 4.106 13 C -0.259 4.259 14 C 0.101 3.899 15 C -0.544 4.544 16 H 0.095 0.905 17 C -0.172 4.172 18 N -0.464 5.464 19 Si 0.799 3.201 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.216 4.216 24 C -0.017 4.017 25 C -0.253 4.253 26 S -0.021 6.021 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.997 -11.905 -14.082 19.105 hybrid contribution 0.313 1.753 0.963 2.024 sum -4.683 -10.152 -13.119 17.236 Atomic orbital electron populations 1.21781 0.94674 1.02578 1.01844 1.21347 0.96908 0.91316 1.04097 1.23800 0.98014 1.00968 0.96594 0.91610 1.21816 0.91441 0.80970 1.04972 1.47219 1.61342 1.15055 1.12885 1.16068 0.78630 0.81904 0.83087 1.90824 1.59530 1.60938 1.37008 1.42626 1.67637 1.08149 1.13495 1.17494 0.95933 0.92172 0.87228 1.21000 1.06594 1.00380 0.97990 1.20833 0.98737 0.94595 0.96471 1.21355 1.09687 0.94491 1.00365 1.17672 0.89093 0.93546 0.89575 1.19647 1.01087 0.95335 1.38285 0.90527 1.26600 0.94267 1.04769 0.91515 1.69894 1.01693 1.39546 1.35238 0.85281 0.78184 0.76834 0.79838 1.18460 1.19783 1.18422 1.20688 1.08392 0.93335 0.99227 1.21952 0.95302 0.96894 0.87512 1.23934 0.97212 0.96937 1.07261 1.86715 1.69433 1.17472 1.28506 0.92398 0.90835 0.93475 0.89447 0.89656 0.87714 0.89294 0.75023 0.85961 0.86178 0.88036 0.90524 0.88479 0.88680 0.86889 0.91159 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.74 71.98 0.70 -1.71 16 2 C -0.10 -1.57 5.42 30.60 0.17 -1.40 16 3 C -0.06 -1.33 2.78 30.85 0.09 -1.25 16 4 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 5 C 0.13 2.99 5.56 86.66 0.48 3.47 16 6 N -0.63 -16.37 2.78 -838.50 -2.33 -18.70 16 7 C 0.70 25.44 8.12 179.06 1.45 26.90 16 8 O -0.60 -26.49 12.68 -4.00 -0.05 -26.54 16 9 N -0.67 -25.10 5.25 -317.34 -1.66 -26.76 16 10 C 0.17 7.79 6.40 38.09 0.24 8.03 16 11 C -0.24 -11.46 8.80 22.58 0.20 -11.26 16 12 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 13 C -0.24 -12.13 9.79 22.75 0.22 -11.90 16 14 C 0.10 5.64 5.40 -21.31 -0.12 5.52 16 15 C -0.51 -27.67 8.98 23.46 0.21 -27.46 16 16 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 17 C 0.04 2.13 5.06 85.25 0.43 2.56 16 18 N -0.84 -44.18 11.85 21.82 0.26 -43.92 16 19 Si 0.98 38.18 29.60 68.60 2.03 40.21 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 C -0.19 -9.98 8.57 22.85 0.20 -9.78 16 24 C 0.11 1.98 6.16 86.48 0.53 2.51 16 25 C -0.10 -1.89 6.67 72.06 0.48 -1.41 16 26 S -0.25 -4.86 20.48 -56.49 -1.16 -6.02 16 27 H 0.06 1.00 7.14 -2.39 -0.02 0.98 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.09 2.38 6.89 -2.39 -0.02 2.36 16 34 H 0.41 12.51 6.22 -92.71 -0.58 11.94 16 35 H 0.12 5.89 5.66 -2.91 -0.02 5.87 16 36 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 39 H 0.10 5.03 7.10 -2.91 -0.02 5.01 16 40 H 0.10 1.65 5.54 -2.39 -0.01 1.63 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.69 355.57 3.04 -63.65 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.45 Total: 39.17 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 5.51 Total: -21.08 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -3.74 Total: -89.38 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -1.16 Total: -6.02 kcal Total: -66.69 3.04 -63.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334982614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.380 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds