Wall clock time and date at job start Tue Mar 31 2020 12:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 H 1.09000 * 109.58682 * 304.72875 * 3 2 1 5 5 C 1.53244 * 109.69948 * 184.38167 * 3 2 1 6 6 N 1.46377 * 109.49095 * 182.48333 * 5 3 2 7 7 C 1.34780 * 119.64509 * 245.09283 * 6 5 3 8 8 O 1.21587 * 120.00142 * 354.73732 * 7 6 5 9 9 N 1.34778 * 119.99554 * 174.74225 * 7 6 5 10 10 C 1.39956 * 119.99719 * 184.65607 * 9 7 6 11 11 C 1.39285 * 119.94322 * 34.77633 * 10 9 7 12 12 C 1.38495 * 120.42873 * 179.97438 * 11 10 9 13 13 C 1.37686 * 120.31910 * 359.97438 * 12 11 10 14 14 C 1.40744 * 119.88360 * 0.02562 * 13 12 11 15 15 C 1.41402 * 120.20717 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99934 * 151.14470 * 15 14 13 17 17 C 1.39931 * 120.00468 * 331.14143 * 15 14 13 18 18 N 1.30827 * 120.00108 * 161.66697 * 17 15 14 19 19 Si 1.86800 * 119.99745 * 341.67298 * 17 15 14 20 20 H 1.48501 * 109.47216 * 87.80548 * 19 17 15 21 21 H 1.48493 * 109.47121 * 207.80333 * 19 17 15 22 22 H 1.48499 * 109.47195 * 327.80776 * 19 17 15 23 23 C 1.38233 * 119.94547 * 214.49461 * 10 9 7 24 24 C 1.46667 * 120.77762 * 65.09809 * 6 5 3 25 25 C 1.53243 * 109.33566 * 294.99132 * 24 6 5 26 26 S 1.81741 * 109.58062 * 65.00253 * 3 2 1 27 27 H 1.08994 * 109.47454 * 59.99995 * 1 2 3 28 28 H 1.09005 * 109.46619 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47060 * 299.99788 * 1 2 3 30 30 H 1.08997 * 109.47060 * 240.00211 * 2 1 3 31 31 H 1.08993 * 109.47480 * 120.00559 * 2 1 3 32 32 H 1.08995 * 109.46894 * 302.49089 * 5 3 2 33 33 H 1.09001 * 109.46249 * 62.48461 * 5 3 2 34 34 H 0.96996 * 120.00295 * 4.66673 * 9 7 6 35 35 H 1.07998 * 119.78855 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.84011 * 179.97438 * 12 11 10 37 37 H 1.07995 * 120.05478 * 180.02562 * 13 12 11 38 38 H 0.96998 * 119.99798 * 179.97438 * 18 17 15 39 39 H 1.07992 * 120.16340 * 0.02562 * 23 10 9 40 40 H 1.09009 * 109.65656 * 174.96976 * 24 6 5 41 41 H 1.08999 * 109.43966 * 54.89092 * 24 6 5 42 42 H 1.08997 * 109.58386 * 297.72822 * 25 24 6 43 43 H 1.08996 * 109.58099 * 177.45256 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9820 -0.8440 5 6 3.5684 1.4500 -0.1102 6 7 4.0556 2.8290 -0.0502 7 6 4.6648 3.3682 -1.1249 8 8 4.8930 2.6820 -2.1023 9 7 5.0210 4.6680 -1.1159 10 6 5.5644 5.2525 -2.2655 11 6 5.1220 4.8527 -3.5243 12 6 5.6524 5.4248 -4.6686 13 6 6.6234 6.3964 -4.5740 14 6 7.0801 6.8105 -3.3088 15 6 8.0767 7.8082 -3.2037 16 1 8.1089 8.4499 -2.3355 17 6 9.0211 7.9641 -4.2243 18 7 9.7035 9.0762 -4.3198 19 14 9.3075 6.5844 -5.4506 20 1 8.3578 6.7241 -6.5836 21 1 10.7003 6.6564 -5.9604 22 1 9.0918 5.2758 -4.7826 23 6 6.5350 6.2299 -2.1498 24 6 3.8890 3.6316 1.1660 25 6 2.3958 3.8666 1.4181 26 16 1.5608 2.2579 1.5519 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.9949 0.8779 0.7137 33 1 3.8665 1.0003 -1.0574 34 1 4.9010 5.1982 -0.3126 35 1 4.3599 4.0921 -3.6085 36 1 5.3027 5.1073 -5.6398 37 1 7.0337 6.8400 -5.4691 38 1 10.3585 9.1842 -5.0271 39 1 6.8757 6.5436 -1.1742 40 1 4.3922 4.5909 1.0441 41 1 4.3213 3.0999 2.0136 42 1 1.9698 4.4316 0.5891 43 1 2.2653 4.4243 2.3455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334982615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:30 Heat of formation + Delta-G solvation = -19.032556 kcal Electronic energy + Delta-G solvation = -24430.153056 eV Core-core repulsion = 20986.590410 eV Total energy + Delta-G solvation = -3443.562647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87502 -39.62282 -37.83272 -36.37946 -35.82158 -34.97065 -32.20348 -31.86743 -31.02616 -29.43408 -27.05089 -25.15674 -24.72986 -23.05311 -22.82740 -22.43333 -20.91128 -19.90994 -19.28550 -17.85661 -17.64212 -17.38033 -16.82030 -16.41977 -16.26808 -16.05861 -15.80890 -15.35766 -14.97828 -14.91727 -14.52812 -14.47692 -14.24490 -13.99469 -13.85597 -13.61629 -13.34595 -13.05223 -12.98041 -12.83462 -12.57888 -12.41477 -12.29550 -12.02401 -11.85405 -11.74725 -11.54614 -11.39373 -10.98413 -10.92836 -10.75715 -10.04494 -9.56739 -8.93649 -8.87793 -8.66105 -6.51522 0.65458 0.69187 0.77128 1.27225 1.39741 1.42710 1.47343 1.49653 1.96576 2.12535 2.61948 2.68805 3.48704 3.51080 3.74073 3.82614 3.96542 4.01713 4.15409 4.26564 4.31151 4.52271 4.52978 4.53472 4.55892 4.62915 4.71711 4.78194 4.83290 4.85199 4.95119 4.97401 5.08236 5.17381 5.25022 5.36849 5.38108 5.53520 5.62010 5.76889 5.87137 5.94965 6.22557 6.37981 6.69068 6.76199 6.83601 7.37992 8.16503 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028848 B = 0.002842 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.388168 B = 9848.361190 C =10387.977267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.060 4.060 4 H 0.073 0.927 5 C 0.131 3.869 6 N -0.627 5.627 7 C 0.701 3.299 8 O -0.607 6.607 9 N -0.672 5.672 10 C 0.193 3.807 11 C -0.231 4.231 12 C -0.067 4.067 13 C -0.269 4.269 14 C 0.091 3.909 15 C -0.480 4.480 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.844 5.844 19 Si 0.962 3.038 20 H -0.254 1.254 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.238 4.238 24 C 0.105 3.895 25 C -0.101 4.101 26 S -0.255 6.255 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.294 0.706 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -14.542 12.295 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.190 4.190 4 H 0.091 0.909 5 C 0.006 3.994 6 N -0.363 5.363 7 C 0.403 3.597 8 O -0.486 6.486 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.252 4.252 12 C -0.086 4.086 13 C -0.288 4.288 14 C 0.088 3.912 15 C -0.509 4.509 16 H 0.082 0.918 17 C -0.162 4.162 18 N -0.470 5.470 19 Si 0.787 3.213 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.260 4.260 24 C -0.019 4.019 25 C -0.251 4.251 26 S -0.028 6.028 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.526 -15.232 12.423 25.048 hybrid contribution 1.080 0.872 -1.197 1.833 sum -14.445 -14.360 11.226 23.257 Atomic orbital electron populations 1.21772 0.94525 1.02518 1.01974 1.21347 0.97013 0.91537 1.03942 1.23671 0.97691 1.00893 0.96730 0.90896 1.21695 0.91817 0.81051 1.04830 1.47271 1.61175 1.15015 1.12881 1.16040 0.78535 0.81706 0.83404 1.90912 1.61149 1.61245 1.35247 1.42681 1.65284 1.09535 1.14797 1.17291 0.93069 0.94010 0.85784 1.20558 1.06864 1.06448 0.91318 1.20797 0.95235 0.94602 0.97970 1.21306 1.04738 1.05763 0.97027 1.17634 0.91611 0.90290 0.91699 1.19420 1.11654 1.14581 1.05246 0.91757 1.26694 0.94006 0.97429 0.98077 1.69705 1.20614 1.25099 1.31547 0.85608 0.76940 0.79734 0.79008 1.17994 1.20355 1.18923 1.20829 1.02760 1.04120 0.98246 1.22038 0.95604 0.96939 0.87329 1.23930 0.96801 0.96719 1.07603 1.86851 1.69337 1.17797 1.28782 0.93126 0.91100 0.92381 0.89716 0.89846 0.88266 0.89309 0.74456 0.87247 0.85804 0.87841 0.89514 0.86710 0.88147 0.87452 0.90246 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.74 71.98 0.70 -1.26 16 2 C -0.10 -1.34 5.42 30.59 0.17 -1.17 16 3 C -0.06 -1.03 2.76 30.67 0.08 -0.95 16 4 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 5 C 0.13 2.58 5.53 86.48 0.48 3.06 16 6 N -0.63 -14.04 2.79 -838.76 -2.34 -16.38 16 7 C 0.70 22.51 7.99 179.05 1.43 23.95 16 8 O -0.61 -24.71 13.39 -3.99 -0.05 -24.76 16 9 N -0.67 -21.48 5.23 -317.32 -1.66 -23.15 16 10 C 0.19 8.00 6.24 38.09 0.24 8.24 16 11 C -0.23 -10.07 8.66 22.58 0.20 -9.87 16 12 C -0.07 -2.98 10.02 22.20 0.22 -2.76 16 13 C -0.27 -13.10 7.33 22.75 0.17 -12.93 16 14 C 0.09 4.65 5.13 -21.31 -0.11 4.55 16 15 C -0.48 -26.57 9.57 23.46 0.22 -26.34 16 16 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 17 C 0.05 2.85 5.41 85.25 0.46 3.31 16 18 N -0.84 -45.80 13.93 21.82 0.30 -45.50 16 19 Si 0.96 43.83 24.62 68.60 1.69 45.52 16 20 H -0.25 -10.98 6.31 99.48 0.63 -10.35 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -12.69 7.10 99.48 0.71 -11.99 16 23 C -0.24 -10.79 9.70 22.85 0.22 -10.57 16 24 C 0.10 1.54 6.21 86.43 0.54 2.07 16 25 C -0.10 -1.36 6.66 72.06 0.48 -0.88 16 26 S -0.25 -4.11 20.49 -56.49 -1.16 -5.27 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.84 7.14 -2.39 -0.02 0.82 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 2.14 6.87 -2.39 -0.02 2.13 16 34 H 0.41 10.03 6.19 -92.71 -0.57 9.46 16 35 H 0.11 4.74 6.48 -2.91 -0.02 4.72 16 36 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.10 5.01 4.38 -2.91 -0.01 5.00 16 38 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.10 1.28 5.49 -2.38 -0.01 1.27 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.70 349.65 2.65 -64.05 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.37 Total: 27.04 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 5.50 Total: -21.56 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.70 Total: -85.02 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.69 Total: 45.52 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -1.16 Total: -5.27 kcal Total: -66.70 2.65 -64.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334982615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.018 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds