Wall clock time and date at job start Tue Mar 31 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38781 * 120.27735 * 2 1 4 4 C 1.37705 * 120.86537 * 180.27239 * 3 2 1 5 5 N 1.37395 * 119.25107 * 179.71773 * 4 3 2 6 6 C 1.46504 * 119.99830 * 354.29930 * 5 4 3 7 7 C 1.53004 * 109.46903 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47156 * 180.02562 * 7 6 5 9 9 H 1.08009 * 119.99939 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00291 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00366 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99667 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47085 * 90.00365 * 12 10 8 14 14 H 1.48503 * 109.47179 * 210.00110 * 12 10 8 15 15 H 1.48498 * 109.47286 * 330.00231 * 12 10 8 16 16 N 1.36615 * 121.49950 * 359.44458 * 4 3 2 17 17 C 1.38458 * 132.33516 * 180.28038 * 16 4 3 18 18 C 1.38739 * 133.82917 * 0.02562 * 17 16 4 19 19 C 1.37940 * 119.73733 * 180.02562 * 18 17 16 20 20 C 1.38771 * 120.47277 * 359.95835 * 19 18 17 21 21 C 1.36585 * 120.65307 * 0.02712 * 20 19 18 22 22 C 1.39949 * 119.89429 * 359.97438 * 21 20 19 23 23 N 1.35433 * 133.24248 * 179.97438 * 22 21 20 24 24 C 1.32018 * 109.66891 * 180.02562 * 23 22 21 25 25 C 1.39478 * 120.27885 * 179.72092 * 2 1 3 26 26 C 1.43197 * 120.64628 * 0.02996 * 25 2 1 27 27 N 3.49176 * 81.02640 * 179.74083 * 2 1 3 28 28 H 1.08993 * 109.47254 * 270.27171 * 1 2 3 29 29 H 1.09000 * 109.47075 * 30.28035 * 1 2 3 30 30 H 1.09006 * 109.46598 * 150.27443 * 1 2 3 31 31 H 1.08007 * 119.57068 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00044 * 174.58222 * 5 4 3 33 33 H 1.09001 * 109.47560 * 299.99907 * 6 5 4 34 34 H 1.08996 * 109.46752 * 60.00430 * 6 5 4 35 35 H 1.09001 * 109.47031 * 300.00347 * 7 6 5 36 36 H 1.08999 * 109.46716 * 60.00230 * 7 6 5 37 37 H 0.96996 * 120.00403 * 179.97438 * 11 10 8 38 38 H 1.08003 * 120.13009 * 359.96934 * 18 17 16 39 39 H 1.08004 * 119.76317 * 180.02562 * 19 18 17 40 40 H 1.07993 * 119.67378 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.05421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1985 0.0000 4 6 3.5838 1.2126 -0.0056 5 7 4.2428 2.4182 -0.0113 6 6 3.4858 3.6662 -0.1375 7 6 4.4515 4.8528 -0.1160 8 6 3.6729 6.1365 -0.2451 9 1 2.5967 6.1089 -0.3332 10 6 4.3341 7.3463 -0.2507 11 7 3.6546 8.4667 -0.3628 12 14 6.1952 7.3941 -0.0976 13 1 6.8048 7.3368 -1.4505 14 1 6.6043 8.6525 0.5767 15 1 6.6561 6.2313 0.7028 16 7 4.3095 0.0552 -0.0001 17 6 5.6720 -0.1910 0.0013 18 6 6.7955 0.6230 -0.0020 19 6 8.0523 0.0545 0.0002 20 6 8.2006 -1.3253 0.0064 21 6 7.1068 -2.1432 0.0100 22 6 5.8216 -1.5892 0.0079 23 7 4.5790 -2.1280 0.0098 24 6 3.6768 -1.1642 0.0056 25 6 2.2104 -1.2045 0.0059 26 6 1.5145 -2.4560 0.0113 27 7 0.9624 -3.4490 0.0156 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5096 31 1 1.6643 2.1324 0.0004 32 1 5.2095 2.4429 0.0640 33 1 2.9342 3.6632 -1.0776 34 1 2.7863 3.7524 0.6940 35 1 5.0028 4.8556 0.8244 36 1 5.1513 4.7667 -0.9472 37 1 4.1197 9.3178 -0.3664 38 1 6.6865 1.6975 -0.0071 39 1 8.9272 0.6878 -0.0019 40 1 9.1907 -1.7565 0.0077 41 1 7.2334 -3.2158 0.0144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343614406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:20 Heat of formation + Delta-G solvation = 114.318100 kcal Electronic energy + Delta-G solvation = -25350.197225 eV Core-core repulsion = 21809.265896 eV Total energy + Delta-G solvation = -3540.931328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.91087 -40.14682 -38.62247 -37.85305 -36.56482 -35.53623 -34.52009 -32.42215 -31.64937 -31.15191 -29.64580 -28.55780 -27.10156 -24.55694 -23.79914 -23.37002 -23.14427 -22.02888 -20.25488 -19.28551 -18.88471 -18.54401 -17.77141 -17.46707 -16.75400 -16.32491 -16.13296 -15.96017 -15.64890 -15.56804 -14.98850 -14.95084 -14.75297 -14.59535 -14.19779 -14.01107 -13.79346 -13.60058 -13.37830 -13.14252 -13.04407 -12.93944 -12.79760 -12.70284 -12.52376 -12.23566 -12.13007 -11.81753 -11.47625 -11.43179 -11.15668 -10.85483 -10.74654 -9.60419 -9.57350 -8.28773 -8.23177 -6.34775 -0.65587 -0.31720 0.36844 0.79632 1.16137 1.38876 1.40907 1.49720 1.69035 1.77897 1.99208 2.35875 2.63097 2.78139 2.79144 2.91385 3.07476 3.37515 3.48676 3.76219 3.96153 4.00293 4.13331 4.24371 4.31970 4.35197 4.40993 4.50391 4.61611 4.70296 4.75427 4.76648 4.81082 5.02150 5.14200 5.22621 5.25074 5.34135 5.35950 5.39119 5.45571 5.54454 5.63386 5.78992 5.82211 6.15840 6.27678 6.55998 6.64913 6.74829 7.30448 8.86672 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.003961 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.659290 B = 7067.945164 C = 9514.754478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.124 3.876 3 C -0.288 4.288 4 C 0.461 3.539 5 N -0.704 5.704 6 C 0.139 3.861 7 C -0.021 4.021 8 C -0.528 4.528 9 H 0.049 0.951 10 C 0.010 3.990 11 N -0.945 5.945 12 Si 0.942 3.058 13 H -0.270 1.270 14 H -0.292 1.292 15 H -0.240 1.240 16 N -0.429 5.429 17 C -0.015 4.015 18 C -0.103 4.103 19 C -0.107 4.107 20 C -0.091 4.091 21 C -0.097 4.097 22 C 0.069 3.931 23 N -0.547 5.547 24 C 0.356 3.644 25 C -0.161 4.161 26 C 0.306 3.694 27 N -0.475 5.475 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.185 0.815 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.131 0.869 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -14.454 1.242 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.316 4.316 4 C 0.243 3.757 5 N -0.330 5.330 6 C 0.017 3.983 7 C -0.059 4.059 8 C -0.566 4.566 9 H 0.067 0.933 10 C -0.188 4.188 11 N -0.585 5.585 12 Si 0.766 3.234 13 H -0.195 1.195 14 H -0.218 1.218 15 H -0.163 1.163 16 N -0.114 5.114 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.049 4.049 23 N -0.269 5.269 24 C 0.104 3.896 25 C -0.172 4.172 26 C -0.006 4.006 27 N -0.153 5.153 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.202 0.798 32 H 0.245 0.755 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.991 -16.437 1.229 17.222 hybrid contribution 1.358 1.647 -0.010 2.134 sum 6.349 -14.790 1.219 16.142 Atomic orbital electron populations 1.21144 0.86725 1.05161 1.05261 1.20121 0.97784 0.88484 0.82042 1.20255 0.87780 1.00693 1.22879 1.18314 0.90117 0.78221 0.89020 1.45301 1.10847 1.03128 1.73697 1.21694 0.94719 0.78876 1.02980 1.19693 0.95955 0.92425 0.97794 1.21155 0.94781 0.90367 1.50347 0.93297 1.25892 1.03446 0.95235 0.94222 1.70031 1.38184 0.98558 1.51767 0.85782 0.79968 0.78439 0.79188 1.19476 1.21791 1.16348 1.42702 1.06062 1.06504 1.56084 1.19109 0.82224 0.97278 1.13144 1.20341 0.90122 0.98700 1.03181 1.21379 0.96219 0.95841 0.99175 1.21166 0.99411 0.93091 0.97389 1.20393 0.87999 1.01484 1.01843 1.19520 0.93363 0.89382 1.02607 1.70876 0.98378 1.28459 1.29190 1.21737 0.93025 0.78394 0.96414 1.15261 0.84358 0.88126 1.29416 1.24791 0.92259 0.91823 0.91775 1.81193 1.10422 1.10298 1.13381 0.87416 0.87071 0.91138 0.79836 0.75511 0.89970 0.89621 0.95079 0.95341 0.92477 0.85122 0.81452 0.81260 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.64 71.24 0.69 -1.05 16 2 C 0.12 2.52 5.94 -19.43 -0.12 2.40 16 3 C -0.29 -5.88 8.88 22.27 0.20 -5.68 16 4 C 0.46 11.22 7.56 131.95 1.00 12.22 16 5 N -0.70 -16.79 5.64 -344.33 -1.94 -18.73 16 6 C 0.14 3.78 4.80 86.38 0.41 4.19 16 7 C -0.02 -0.74 4.15 29.85 0.12 -0.62 16 8 C -0.53 -25.44 9.66 25.60 0.25 -25.19 16 9 H 0.05 2.57 7.99 -2.91 -0.02 2.55 16 10 C 0.01 0.52 5.47 84.65 0.46 0.98 16 11 N -0.95 -53.93 13.96 21.45 0.30 -53.63 16 12 Si 0.94 38.55 27.47 68.60 1.88 40.43 16 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.24 -8.69 6.54 99.48 0.65 -8.04 16 16 N -0.43 -11.91 3.00 -336.43 -1.01 -12.92 16 17 C -0.02 -0.41 6.92 38.80 0.27 -0.14 16 18 C -0.10 -2.16 9.56 22.32 0.21 -1.94 16 19 C -0.11 -1.68 10.03 22.33 0.22 -1.46 16 20 C -0.09 -1.40 9.96 22.01 0.22 -1.18 16 21 C -0.10 -2.14 10.06 22.30 0.22 -1.91 16 22 C 0.07 2.02 7.21 39.58 0.29 2.31 16 23 N -0.55 -18.49 11.34 -181.62 -2.06 -20.55 16 24 C 0.36 10.98 7.73 135.72 1.05 12.03 16 25 C -0.16 -4.31 5.95 -19.52 -0.12 -4.42 16 26 C 0.31 9.05 13.95 88.33 1.23 10.28 16 27 N -0.47 -15.51 18.54 19.00 0.35 -15.15 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.07 1.08 7.13 -2.38 -0.02 1.06 16 31 H 0.18 3.01 6.47 -2.91 -0.02 2.99 16 32 H 0.41 9.16 5.30 -92.71 -0.49 8.67 16 33 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 34 H 0.09 2.20 7.63 -2.39 -0.02 2.18 16 35 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 36 H 0.03 0.99 7.57 -2.39 -0.02 0.97 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.13 2.37 5.75 -2.91 -0.02 2.36 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -68.76 349.98 4.69 -64.07 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.55 Total: 15.66 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.62 Total: 0.82 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -4.36 Total: -120.98 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.88 Total: 40.43 kcal Total: -68.76 4.69 -64.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343614406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.385 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds