Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47476 * 2 1 4 4 C 1.53001 * 109.47195 * 120.00246 * 2 1 3 5 5 H 1.09004 * 109.47254 * 294.77398 * 4 2 1 6 6 N 1.46901 * 109.47042 * 54.77255 * 4 2 1 7 7 C 1.46903 * 111.00078 * 203.25262 * 6 4 2 8 8 C 1.52993 * 109.47280 * 180.11530 * 7 6 4 9 9 H 1.08997 * 109.47273 * 305.00165 * 8 7 6 10 10 C 1.47205 * 109.47253 * 64.99863 * 8 7 6 11 11 N 5.84296 * 98.03346 * 166.17626 * 2 1 3 12 12 C 1.52995 * 109.47431 * 184.99573 * 8 7 6 13 13 C 1.50702 * 109.47533 * 175.00086 * 12 8 7 14 14 H 1.07999 * 119.99457 * 359.97438 * 13 12 8 15 15 C 1.37876 * 120.00036 * 180.02562 * 13 12 8 16 16 N 1.31511 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99822 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46947 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47384 * 119.99433 * 17 15 13 20 20 H 1.48507 * 109.46835 * 239.99576 * 17 15 13 21 21 C 1.50693 * 109.47337 * 174.77479 * 4 2 1 22 22 C 1.38245 * 119.99056 * 99.99979 * 21 4 2 23 23 C 1.38213 * 120.01631 * 179.97438 * 22 21 4 24 24 C 1.38345 * 119.98707 * 0.30475 * 23 22 21 25 25 Cl 1.73604 * 120.01333 * 179.70143 * 24 23 22 26 26 C 1.38353 * 119.97186 * 359.46108 * 24 23 22 27 27 C 1.38213 * 119.98663 * 0.51471 * 26 24 23 28 28 H 1.08998 * 109.46949 * 294.72377 * 1 2 3 29 29 H 1.09004 * 109.46800 * 54.71858 * 1 2 3 30 30 H 1.08995 * 109.47750 * 174.72262 * 1 2 3 31 31 H 1.08997 * 109.47166 * 239.99904 * 2 1 3 32 32 H 1.08998 * 109.47330 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47316 * 299.99807 * 3 2 1 34 34 H 1.09006 * 109.46866 * 60.00367 * 3 2 1 35 35 H 1.00897 * 110.99857 * 79.30030 * 6 4 2 36 36 H 1.09002 * 109.46794 * 300.11650 * 7 6 4 37 37 H 1.09000 * 109.47218 * 60.11086 * 7 6 4 38 38 H 1.09001 * 109.47616 * 295.00464 * 12 8 7 39 39 H 1.09002 * 109.46960 * 55.00285 * 12 8 7 40 40 H 0.96997 * 120.00326 * 179.97438 * 16 15 13 41 41 H 1.08006 * 119.98561 * 0.02562 * 22 21 4 42 42 H 1.08001 * 120.00250 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00677 * 180.26059 * 26 24 23 44 44 H 1.08004 * 119.99337 * 179.76756 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7551 -0.1563 2.1368 6 7 1.4500 -2.0651 1.3139 7 6 1.4460 -2.5725 2.6925 8 6 0.8282 -3.9719 2.7191 9 1 -0.1620 -3.9406 2.2646 10 6 1.6852 -4.9010 1.9646 11 7 2.3465 -5.6180 1.3824 12 6 0.7097 -4.4497 4.1677 13 6 -0.0097 -5.7734 4.2029 14 1 -0.3488 -6.2282 3.2839 15 6 -0.2358 -6.4033 5.4083 16 7 0.1768 -5.8493 6.5274 17 14 -1.1269 -8.0446 5.4518 18 1 -1.4840 -8.4507 4.0688 19 1 -0.2423 -9.0723 6.0571 20 1 -2.3633 -7.9151 6.2642 21 6 3.5413 -0.8344 1.1863 22 6 4.3313 0.0502 1.8967 23 6 5.7084 -0.0534 1.8397 24 6 6.2964 -1.0385 1.0666 25 17 8.0261 -1.1643 0.9884 26 6 5.5052 -1.9265 0.3596 27 6 4.1283 -1.8223 0.4178 28 1 -0.3633 0.4298 0.9335 29 1 -0.3633 0.5936 -0.8390 30 1 -0.3634 -1.0232 -0.0945 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 1.9309 -2.7012 0.6959 36 1 2.4692 -2.6199 3.0651 37 1 0.8600 -1.9045 3.3238 38 1 1.7058 -4.5661 4.5947 39 1 0.1494 -3.7162 4.7475 40 1 0.0174 -6.2922 7.3755 41 1 3.8722 0.8217 2.4970 42 1 6.3253 0.6375 2.3952 43 1 5.9636 -2.6984 -0.2408 44 1 3.5106 -2.5131 -0.1370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356114119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = 4.543543 kcal Electronic energy + Delta-G solvation = -24219.812511 eV Core-core repulsion = 20775.228494 eV Total energy + Delta-G solvation = -3444.584017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00777 -38.90187 -37.89743 -37.07736 -35.78839 -34.82099 -33.03172 -32.10464 -31.41285 -28.52007 -27.64358 -26.13679 -24.43779 -23.70861 -23.38765 -22.51658 -20.64748 -18.60850 -18.38076 -18.19597 -16.92089 -16.70255 -16.46277 -16.23213 -15.65538 -15.22767 -15.19043 -14.71630 -14.60559 -14.40444 -14.36706 -14.21357 -13.92108 -13.59549 -13.37564 -13.26651 -13.09101 -12.87425 -12.78510 -12.69720 -12.51393 -12.47378 -12.35304 -12.26785 -12.02818 -11.80329 -11.71327 -11.62726 -11.42711 -11.34743 -11.07593 -10.55156 -10.05320 -9.59337 -9.40016 -8.19167 -6.27051 0.09533 0.27386 1.11027 1.38942 1.42232 1.52318 1.95929 1.97420 2.41586 2.58555 3.14042 3.16309 3.27003 3.64542 3.75184 3.88428 4.14332 4.19433 4.22115 4.32868 4.39636 4.43948 4.53543 4.62187 4.69162 4.78748 4.88981 4.93021 4.98072 5.00747 5.04702 5.15009 5.21090 5.22559 5.27325 5.37422 5.43831 5.48446 5.57289 5.64430 5.72996 5.78842 5.80274 6.06075 6.22231 6.31946 6.76534 6.88439 7.41630 8.91878 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.003281 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.023329 B = 8532.604912 C = 9946.189895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.144 4.144 4 C 0.132 3.868 5 H 0.103 0.897 6 N -0.675 5.675 7 C 0.079 3.921 8 C 0.018 3.982 9 H 0.125 0.875 10 C 0.249 3.751 11 N -0.503 5.503 12 C 0.039 3.961 13 C -0.537 4.537 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.947 3.053 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.103 4.103 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.050 4.050 25 Cl -0.077 7.077 26 C -0.118 4.118 27 C -0.116 4.116 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.334 0.666 36 H 0.026 0.974 37 H 0.109 0.891 38 H -0.003 1.003 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 18.954 -11.805 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.202 4.202 4 C 0.022 3.978 5 H 0.121 0.879 6 N -0.305 5.305 7 C -0.051 4.051 8 C -0.003 4.003 9 H 0.143 0.857 10 C -0.067 4.067 11 N -0.181 5.181 12 C 0.000 4.000 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.076 4.076 25 Cl -0.048 7.048 26 C -0.137 4.137 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.044 0.956 37 H 0.128 0.872 38 H 0.015 0.985 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.174 0.826 42 H 0.168 0.832 43 H 0.150 0.850 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.091 18.052 -12.488 23.067 hybrid contribution 0.766 -1.478 0.633 1.782 sum 7.857 16.573 -11.854 21.839 Atomic orbital electron populations 1.21642 0.93880 1.02081 1.01347 1.21006 0.96729 0.95785 0.95748 1.21839 1.00806 0.94998 1.02575 1.20819 0.85803 0.90534 1.00659 0.87878 1.60815 1.58249 1.03711 1.07685 1.21949 0.99232 0.93260 0.90635 1.19245 0.96558 0.89308 0.95225 0.85717 1.29703 0.92561 0.93039 0.91402 1.81034 1.12532 1.11103 1.13412 1.18973 0.96151 0.95737 0.89092 1.21584 1.36963 1.06294 0.92687 0.92807 1.25693 0.96587 1.00824 0.95605 1.70032 1.47700 1.40337 0.98235 0.85669 0.78640 0.80140 0.78281 1.19363 1.21261 1.19771 1.20958 0.98194 0.95133 0.96168 1.21304 0.92328 0.99173 0.98700 1.21319 0.95738 0.97610 0.98268 1.21073 0.84492 0.99769 1.02295 1.98363 1.11028 1.97801 1.97598 1.21129 0.93748 0.98918 0.99882 1.20969 0.94025 0.98827 0.99616 0.92613 0.92888 0.92455 0.92289 0.93021 0.92091 0.91611 0.84630 0.95554 0.87241 0.98470 0.94408 0.92754 0.82568 0.83221 0.85022 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.88 71.98 0.64 -1.49 16 2 C -0.07 -1.16 2.66 -10.79 -0.03 -1.19 16 3 C -0.14 -1.86 8.91 71.98 0.64 -1.22 16 4 C 0.13 2.35 1.81 44.17 0.08 2.43 16 5 H 0.10 1.66 7.69 -2.39 -0.02 1.64 16 6 N -0.67 -15.05 5.34 -495.46 -2.64 -17.69 16 7 C 0.08 2.11 4.92 86.30 0.42 2.54 16 8 C 0.02 0.64 2.42 -12.60 -0.03 0.61 16 9 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 10 C 0.25 9.73 12.98 89.44 1.16 10.89 16 11 N -0.50 -21.37 18.54 20.01 0.37 -21.00 16 12 C 0.04 1.78 4.42 29.85 0.13 1.92 16 13 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 14 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 15 C 0.01 0.64 5.46 84.66 0.46 1.11 16 16 N -0.92 -52.75 13.29 21.45 0.28 -52.46 16 17 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C -0.10 -1.98 3.91 -19.86 -0.08 -2.06 16 22 C -0.10 -1.64 8.76 22.27 0.20 -1.44 16 23 C -0.11 -2.02 9.83 22.29 0.22 -1.80 16 24 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 25 Cl -0.08 -1.58 28.96 -2.72 -0.08 -1.66 16 26 C -0.12 -2.67 9.83 22.29 0.22 -2.45 16 27 C -0.12 -2.56 9.14 22.26 0.20 -2.36 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 1.09 7.66 -2.39 -0.02 1.08 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.71 6.76 -2.39 -0.02 0.69 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.33 8.16 5.47 -89.70 -0.49 7.67 16 36 H 0.03 0.76 7.93 -2.39 -0.02 0.74 16 37 H 0.11 2.58 8.06 -2.39 -0.02 2.56 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.16 1.84 8.04 -2.91 -0.02 1.82 16 42 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.12 2.78 6.50 -2.91 -0.02 2.76 16 Total: -1.00 -61.29 381.07 5.06 -56.22 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.50 Total: 14.69 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.60 Total: -23.43 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.99 Total: -91.15 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -61.29 5.06 -56.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356114119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.768 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds