Wall clock time and date at job start Tue Mar 31 2020 13:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99716 * 2 1 4 4 N 1.46505 * 109.46940 * 125.00512 * 3 2 1 5 5 C 1.46496 * 120.00090 * 262.27119 * 4 3 2 6 6 C 1.50700 * 109.46620 * 269.99701 * 5 4 3 7 7 H 1.08004 * 120.00229 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99878 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00163 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00250 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47074 * 89.99572 * 10 8 6 12 12 H 1.48499 * 109.47294 * 209.99945 * 10 8 6 13 13 H 1.48499 * 109.47108 * 329.99976 * 10 8 6 14 14 C 1.34775 * 119.99469 * 82.26699 * 4 3 2 15 15 O 1.21691 * 119.99571 * 182.59333 * 14 4 3 16 16 C 1.46682 * 120.00529 * 2.58805 * 14 4 3 17 17 S 1.76209 * 126.12970 * 351.46807 * 16 14 4 18 18 C 1.70953 * 90.31524 * 179.97438 * 17 16 14 19 19 N 1.29432 * 110.38736 * 359.97438 * 18 17 16 20 20 C 1.30940 * 117.36870 * 0.02562 * 19 18 17 21 21 C 1.50692 * 122.90749 * 180.02562 * 20 19 18 22 22 C 1.54266 * 110.03534 * 57.18486 * 21 20 19 23 23 C 1.54891 * 104.19807 * 217.10648 * 22 21 20 24 24 C 1.54889 * 102.74592 * 37.94457 * 23 22 21 25 25 C 1.53881 * 110.02966 * 300.02143 * 21 20 19 26 26 H 1.08001 * 120.00143 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00226 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00143 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47011 * 5.00890 * 3 2 1 30 30 H 1.08999 * 109.47331 * 245.00226 * 3 2 1 31 31 H 1.08995 * 109.47303 * 29.99233 * 5 4 3 32 32 H 1.08999 * 109.47126 * 149.99923 * 5 4 3 33 33 H 0.96999 * 119.99994 * 180.02562 * 9 8 6 34 34 H 1.08000 * 124.80771 * 180.27291 * 18 17 16 35 35 H 1.09003 * 110.01858 * 178.63102 * 21 20 19 36 36 H 1.09005 * 110.48614 * 335.78917 * 22 21 20 37 37 H 1.09002 * 110.48403 * 98.42889 * 22 21 20 38 38 H 1.08996 * 110.75917 * 279.62757 * 23 22 21 39 39 H 1.09000 * 110.75082 * 156.25557 * 23 22 21 40 40 H 1.08998 * 110.48610 * 203.37378 * 24 23 22 41 41 H 1.09007 * 110.59633 * 80.79085 * 24 23 22 42 42 H 1.08998 * 110.03192 * 238.56956 * 25 21 20 43 43 H 1.08998 * 110.03339 * 359.95344 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6194 2.0157 2.3717 6 6 3.0571 3.4561 2.3029 7 1 3.5632 3.8253 1.4231 8 6 2.8115 4.3026 3.3631 9 7 2.1948 3.8532 4.4343 10 14 3.3535 6.0883 3.2777 11 1 2.2634 6.9089 2.6917 12 1 3.6614 6.5781 4.6453 13 1 4.5665 6.1973 2.4280 14 6 4.1942 0.7273 1.0311 15 8 4.9477 0.7087 1.9864 16 6 4.5922 0.0916 -0.2294 17 16 3.5611 -0.1636 -1.6354 18 6 4.8604 -0.9009 -2.4663 19 7 5.9183 -0.9221 -1.7209 20 6 5.8205 -0.4044 -0.5222 21 6 6.9728 -0.3625 0.4480 22 6 8.1678 0.3819 -0.1825 23 6 9.4091 -0.3924 0.3263 24 6 8.9287 -1.8646 0.2983 25 6 7.4566 -1.7910 0.7538 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 1.5378 1.9705 2.4993 32 1 3.1057 1.5281 3.2165 33 1 2.0217 4.4489 5.1800 34 1 4.8076 -1.2893 -3.4727 35 1 6.6671 0.1333 1.3693 36 1 8.1120 0.3407 -1.2704 37 1 8.1966 1.4163 0.1600 38 1 9.6645 -0.0886 1.3414 39 1 10.2555 -0.2494 -0.3454 40 1 9.5127 -2.4697 0.9917 41 1 8.9959 -2.2708 -0.7110 42 1 7.3865 -1.9880 1.8235 43 1 6.8574 -2.5145 0.2010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359443221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:12 Heat of formation + Delta-G solvation = 10.315246 kcal Electronic energy + Delta-G solvation = -25182.052407 eV Core-core repulsion = 21739.762376 eV Total energy + Delta-G solvation = -3442.290030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61568 -40.34919 -38.28807 -37.39040 -35.23858 -33.79121 -32.33578 -30.32753 -29.61010 -28.85575 -27.21046 -26.30108 -25.04147 -22.45839 -21.66654 -21.48202 -21.01769 -19.58318 -19.04051 -18.61570 -17.79098 -17.27866 -16.77522 -16.55928 -16.29775 -15.94391 -15.86209 -15.38842 -15.22112 -14.48474 -14.40214 -14.29104 -14.14344 -14.06239 -13.56077 -13.38685 -13.13277 -12.83920 -12.62197 -12.44987 -12.32141 -12.26562 -12.00284 -11.96458 -11.80040 -11.73561 -11.72231 -11.44252 -10.75362 -10.65605 -10.64811 -10.40694 -10.24611 -9.74759 -9.46672 -8.25073 -6.39933 -0.68039 0.25981 0.69936 1.24700 1.35414 1.38450 1.47974 1.52686 2.11696 2.31368 2.40198 3.05042 3.18953 3.52911 3.71216 3.77200 3.87061 3.94261 4.08410 4.22231 4.22921 4.34503 4.52117 4.62499 4.68219 4.69878 4.76070 4.83425 4.92618 4.94393 4.99546 5.06850 5.10592 5.17431 5.25525 5.30693 5.40400 5.47499 5.54662 5.63836 5.70753 5.84111 6.00940 6.49761 6.67533 6.70956 7.17121 7.33623 8.82266 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.005018 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.773825 B = 5578.789883 C = 7284.315907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.200 4.200 3 C 0.123 3.877 4 N -0.591 5.591 5 C 0.267 3.733 6 C -0.546 4.546 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.577 3.423 15 O -0.570 6.570 16 C -0.333 4.333 17 S 0.256 5.744 18 C 0.002 3.998 19 N -0.491 5.491 20 C 0.149 3.851 21 C -0.055 4.055 22 C -0.109 4.109 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.103 4.103 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.003 0.997 33 H 0.268 0.732 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -11.135 -16.864 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.220 4.220 3 C -0.001 4.001 4 N -0.320 5.320 5 C 0.147 3.853 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.366 3.634 15 O -0.452 6.452 16 C -0.456 4.456 17 S 0.515 5.485 18 C -0.292 4.292 19 N -0.204 5.204 20 C 0.010 3.990 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.141 4.141 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.258 0.742 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.532 -11.123 -16.764 20.277 hybrid contribution 0.707 1.073 1.140 1.718 sum 3.239 -10.050 -15.624 18.857 Atomic orbital electron populations 1.24122 0.94757 1.03583 0.95727 1.23217 0.97222 0.97291 1.04302 1.21134 0.92736 0.98138 0.88064 1.48081 1.15191 1.52214 1.16527 1.18803 0.94911 0.90756 0.80872 1.21639 1.38683 0.95524 1.02562 0.93080 1.25788 0.94815 1.03483 0.94488 1.70042 1.42165 1.37620 1.06539 0.85451 0.78846 0.79160 0.77586 1.18599 1.20513 1.20056 1.17241 0.81711 0.78146 0.86323 1.90650 1.52346 1.62219 1.39968 1.25528 1.00774 1.17483 1.01861 1.84243 1.12095 1.50082 1.02081 1.29940 0.93444 0.99815 1.05969 1.66171 1.30624 1.19859 1.03790 1.20606 0.93514 0.92798 0.92070 1.20989 0.91432 0.98669 0.96490 1.22344 0.93790 0.98144 1.00392 1.22471 0.96706 0.94883 1.01384 1.22286 0.93866 0.96747 1.01858 1.22036 0.97575 0.94071 1.00424 0.87505 0.85755 0.87004 0.88143 0.89200 0.95239 0.97900 0.92276 0.74228 0.89195 0.91068 0.93154 0.91591 0.89633 0.90268 0.90827 0.92435 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 14.32 67.78 0.97 -2.10 16 2 C -0.20 -5.27 7.97 25.65 0.20 -5.07 16 3 C 0.12 4.01 5.43 85.63 0.47 4.47 16 4 N -0.59 -26.25 2.46 -835.23 -2.06 -28.31 16 5 C 0.27 14.51 5.15 85.63 0.44 14.95 16 6 C -0.55 -31.49 9.39 25.60 0.24 -31.25 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 8 C 0.01 0.79 5.46 84.65 0.46 1.26 16 9 N -0.92 -55.41 13.29 21.45 0.28 -55.12 16 10 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.58 26.33 7.54 86.45 0.65 26.98 16 15 O -0.57 -30.67 13.63 -4.32 -0.06 -30.73 16 16 C -0.33 -11.85 6.23 23.88 0.15 -11.70 16 17 S 0.26 5.86 15.92 -56.49 -0.90 4.96 16 18 C 0.00 0.03 12.22 130.60 1.60 1.63 16 19 N -0.49 -13.65 9.98 -190.41 -1.90 -15.55 16 20 C 0.15 5.03 5.14 42.09 0.22 5.25 16 21 C -0.05 -1.89 3.17 -10.82 -0.03 -1.93 16 22 C -0.11 -3.22 6.34 31.67 0.20 -3.02 16 23 C -0.12 -2.74 6.91 31.89 0.22 -2.52 16 24 C -0.11 -2.49 6.83 31.67 0.22 -2.27 16 25 C -0.10 -2.99 6.42 31.32 0.20 -2.79 16 26 H 0.11 2.19 7.84 -2.91 -0.02 2.16 16 27 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.11 2.91 6.95 -2.91 -0.02 2.89 16 29 H 0.10 3.28 7.66 -2.39 -0.02 3.26 16 30 H 0.09 2.58 4.51 -20.84 -0.09 2.49 16 31 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.00 0.18 7.39 -2.39 -0.02 0.16 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.24 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.09 3.87 5.04 -2.39 -0.01 3.85 16 36 H 0.07 2.05 7.54 -2.38 -0.02 2.03 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.69 7.61 -2.39 -0.02 1.67 16 Total: -1.00 -74.07 358.34 4.52 -69.55 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.92 Total: 16.52 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 6.20 Total: -8.12 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -3.67 Total: -98.98 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -0.90 Total: 4.96 kcal Total: -74.07 4.52 -69.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359443221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.864 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds