Wall clock time and date at job start Tue Mar 31 2020 12:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28670 * 124.92852 * 2 1 4 4 C 1.32518 * 117.87878 * 180.02562 * 3 2 1 5 5 C 1.34614 * 113.15818 * 0.02562 * 4 3 2 6 6 S 1.70913 * 124.93137 * 179.97438 * 2 1 3 7 7 C 1.51001 * 125.22502 * 179.97438 * 5 4 3 8 8 C 1.53272 * 108.57677 * 343.90083 * 7 5 4 9 9 C 1.53202 * 108.97009 * 49.31873 * 8 7 5 10 10 C 1.52136 * 124.20012 * 180.02562 * 4 3 2 11 11 H 1.09001 * 109.59165 * 282.40664 * 10 4 3 12 12 C 1.50697 * 109.59454 * 42.70724 * 10 4 3 13 13 O 1.21275 * 120.00356 * 85.33768 * 12 10 4 14 14 N 1.34781 * 120.00030 * 265.33962 * 12 10 4 15 15 C 1.46490 * 120.00240 * 185.04919 * 14 12 10 16 16 C 1.52998 * 109.47314 * 174.69523 * 15 14 12 17 17 C 1.50703 * 115.55055 * 303.69571 * 16 15 14 18 18 H 1.07998 * 119.99798 * 144.38544 * 17 16 15 19 19 C 1.37878 * 119.99892 * 324.38650 * 17 16 15 20 20 N 1.31516 * 119.99970 * 349.62592 * 19 17 16 21 21 Si 1.86797 * 119.99919 * 169.62530 * 19 17 16 22 22 H 1.48498 * 109.47196 * 65.00069 * 21 19 17 23 23 H 1.48501 * 109.47306 * 185.00307 * 21 19 17 24 24 H 1.48498 * 109.47192 * 305.00034 * 21 19 17 25 25 C 1.53003 * 117.49822 * 158.02616 * 16 15 14 26 26 C 1.52996 * 117.49924 * 89.36902 * 16 15 14 27 27 H 1.09006 * 109.46779 * 184.95864 * 1 2 3 28 28 H 1.08999 * 109.46968 * 304.95944 * 1 2 3 29 29 H 1.08998 * 109.47104 * 64.96368 * 1 2 3 30 30 H 1.09003 * 109.61717 * 103.62992 * 7 5 4 31 31 H 1.09000 * 109.61320 * 223.98556 * 7 5 4 32 32 H 1.08995 * 109.55325 * 169.15444 * 8 7 5 33 33 H 1.09004 * 109.54751 * 289.44040 * 8 7 5 34 34 H 1.08999 * 109.46998 * 169.60528 * 9 8 7 35 35 H 1.09005 * 109.50197 * 49.58669 * 9 8 7 36 36 H 0.97003 * 119.99975 * 5.31580 * 14 12 10 37 37 H 1.09006 * 109.47292 * 294.69337 * 15 14 12 38 38 H 1.09005 * 109.47310 * 54.69183 * 15 14 12 39 39 H 0.97001 * 119.99874 * 185.03748 * 20 19 17 40 40 H 1.08996 * 117.50251 * 0.02562 * 25 16 15 41 41 H 1.09009 * 117.49778 * 145.02048 * 25 16 15 42 42 H 1.09006 * 117.49911 * 214.97737 * 26 16 15 43 43 H 1.09006 * 117.50123 * 359.97159 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5589 0.8923 -0.0005 5 6 3.9324 -0.4010 -0.0015 6 16 2.4857 -1.4012 0.0006 7 6 5.3591 -0.8955 -0.0029 8 6 6.2773 0.2637 -0.4058 9 6 5.9250 1.4940 0.4365 10 6 4.5620 2.0361 0.0000 11 1 4.6368 2.4571 -1.0027 12 6 4.1112 3.1033 0.9638 13 8 4.3949 3.0174 2.1397 14 7 3.3925 4.1531 0.5189 15 6 3.0488 5.2454 1.4325 16 6 2.3521 6.3623 0.6529 17 6 3.1246 6.9193 -0.5151 18 1 2.6034 7.2290 -1.4089 19 6 4.4968 7.0333 -0.4427 20 7 5.1120 6.8522 0.7055 21 14 5.4819 7.4451 -1.9754 22 1 5.1269 8.8100 -2.4402 23 1 6.9323 7.3909 -1.6610 24 1 5.1700 6.4616 -3.0434 25 6 1.4699 7.3312 1.4429 26 6 0.8295 6.2892 0.5225 27 1 -0.3633 -1.0239 0.0888 28 1 -0.3633 0.5888 0.8422 29 1 -0.3633 0.4349 -0.9311 30 1 5.6264 -1.2446 0.9946 31 1 5.4624 -1.7130 -0.7165 32 1 7.3160 -0.0148 -0.2278 33 1 6.1352 0.4913 -1.4623 34 1 6.6846 2.2624 0.2927 35 1 5.8853 1.2149 1.4894 36 1 3.0996 4.1836 -0.4054 37 1 2.3805 4.8729 2.2090 38 1 3.9576 5.6348 1.8915 39 1 6.0677 7.0038 0.7729 40 1 1.3862 7.1731 2.5181 41 1 1.4480 8.3714 1.1175 42 1 0.3864 6.6443 -0.4080 43 1 0.3240 5.4451 0.9917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431172135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:53 Heat of formation + Delta-G solvation = 13.780842 kcal Electronic energy + Delta-G solvation = -25264.781029 eV Core-core repulsion = 21822.641278 eV Total energy + Delta-G solvation = -3442.139751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44011 -38.48221 -36.77624 -36.09452 -32.92949 -32.15207 -31.55192 -31.05575 -27.96919 -26.13533 -25.33986 -23.87978 -23.18311 -21.22387 -21.06095 -19.58717 -19.19886 -18.43384 -17.87944 -16.71551 -15.94895 -15.28037 -14.98736 -14.75474 -14.67310 -14.44998 -14.13763 -13.91188 -13.63742 -13.35834 -13.05349 -12.82226 -12.67112 -12.36608 -12.29881 -11.92686 -11.72649 -11.60648 -11.41133 -11.12211 -11.01157 -10.85513 -10.74749 -10.49801 -10.47402 -10.22030 -9.61372 -9.48245 -9.19356 -9.12134 -8.97375 -8.76115 -8.41234 -8.17796 -7.75180 -6.02533 -4.13210 0.73903 1.32809 1.71208 2.81247 3.23461 3.30757 3.32238 3.50344 4.01084 4.17355 4.32218 4.68757 4.78500 4.90240 4.95713 5.04713 5.14092 5.19105 5.39844 5.47749 5.49142 5.52684 5.54643 5.68201 5.76677 5.81969 5.96301 6.02253 6.08229 6.11717 6.27513 6.38071 6.43002 6.61240 6.68361 6.77724 6.96359 7.15156 7.32620 7.61095 7.69075 7.84055 7.99157 8.36868 8.64034 8.86208 9.24089 9.47570 10.93886 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004612 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.888914 B = 6069.296013 C = 7211.171717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.053 3.947 3 N -0.460 5.460 4 C 0.090 3.910 5 C -0.220 4.220 6 S 0.095 5.905 7 C -0.039 4.039 8 C -0.114 4.114 9 C -0.105 4.105 10 C -0.029 4.029 11 H 0.102 0.898 12 C 0.525 3.475 13 O -0.562 6.562 14 N -0.678 5.678 15 C 0.160 3.840 16 C 0.039 3.961 17 C -0.497 4.497 18 H 0.060 0.940 19 C 0.077 3.923 20 N -0.868 5.868 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.196 4.196 26 C -0.210 4.210 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.398 0.602 37 H 0.020 0.980 38 H 0.115 0.885 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -17.245 -3.577 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.226 4.226 3 N -0.173 5.173 4 C -0.041 4.041 5 C -0.341 4.341 6 S 0.351 5.649 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.143 4.143 10 C -0.053 4.053 11 H 0.120 0.880 12 C 0.309 3.691 13 O -0.442 6.442 14 N -0.324 5.324 15 C 0.037 3.963 16 C 0.039 3.961 17 C -0.534 4.534 18 H 0.078 0.922 19 C -0.128 4.128 20 N -0.504 5.504 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.235 4.235 26 C -0.248 4.248 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.038 0.962 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.342 -17.902 -2.661 18.250 hybrid contribution 0.733 1.137 -1.259 1.848 sum -1.609 -16.765 -3.919 17.292 Atomic orbital electron populations 1.20414 0.85215 1.03150 1.04643 1.26767 1.01502 0.90303 1.04015 1.65761 1.04659 1.31801 1.15129 1.20397 0.89094 0.92803 1.01825 1.25909 0.99864 0.95502 1.12816 1.83636 0.97890 1.13159 1.70199 1.20184 0.87094 0.98199 1.02397 1.21640 0.98920 0.94339 1.00411 1.21473 0.94164 0.97403 1.01307 1.20160 0.92782 0.91482 1.00900 0.87989 1.19715 0.78757 0.82316 0.88329 1.90604 1.58173 1.77905 1.17494 1.45661 1.52198 1.19673 1.14835 1.21065 1.01129 0.84277 0.89826 1.19183 0.86465 0.94218 0.96280 1.20428 0.90900 1.42964 0.99107 0.92176 1.24953 0.97629 0.94382 0.95793 1.69809 1.10243 1.46810 1.23512 0.86698 0.79083 0.79036 0.83515 1.20319 1.21167 1.20004 1.22907 1.09268 0.95872 0.95431 1.22930 0.99846 1.01215 1.00771 0.90513 0.89323 0.89379 0.90000 0.90434 0.90438 0.91271 0.90263 0.89879 0.76813 0.96179 0.86772 0.92604 0.91612 0.90265 0.90709 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.47 36.01 0.38 -0.35 16 2 C 0.05 0.73 7.38 -13.60 -0.10 0.63 16 3 N -0.46 -7.83 10.23 -7.32 -0.07 -7.90 16 4 C 0.09 1.49 6.21 -82.87 -0.51 0.97 16 5 C -0.22 -3.01 6.39 -35.44 -0.23 -3.23 16 6 S 0.09 1.10 23.16 -107.50 -2.49 -1.39 16 7 C -0.04 -0.41 6.28 -27.60 -0.17 -0.59 16 8 C -0.11 -1.24 5.95 -26.49 -0.16 -1.39 16 9 C -0.11 -1.55 4.98 -26.60 -0.13 -1.68 16 10 C -0.03 -0.50 2.88 -92.19 -0.27 -0.77 16 11 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 12 C 0.53 11.45 6.63 -10.98 -0.07 11.37 16 13 O -0.56 -14.06 16.08 5.56 0.09 -13.97 16 14 N -0.68 -15.26 5.34 -60.30 -0.32 -15.58 16 15 C 0.16 3.95 4.80 -4.05 -0.02 3.93 16 16 C 0.04 0.96 1.91 -155.66 -0.30 0.66 16 17 C -0.50 -12.87 8.52 -34.44 -0.29 -13.17 16 18 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 19 C 0.08 2.00 5.24 -17.82 -0.09 1.90 16 20 N -0.87 -23.56 10.72 55.43 0.59 -22.96 16 21 Si 0.89 20.20 29.55 -169.99 -5.02 15.18 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.20 -4.46 9.96 -26.69 -0.27 -4.72 16 26 C -0.21 -4.55 9.93 -26.70 -0.27 -4.82 16 27 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.35 7.50 -51.93 -0.39 0.96 16 36 H 0.40 8.66 8.20 -40.82 -0.33 8.33 16 37 H 0.02 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.11 3.18 5.88 -51.93 -0.31 2.88 16 39 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.08 1.80 8.14 -51.92 -0.42 1.37 16 42 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -30.79 365.57 -10.71 -41.50 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.49 Total: 10.88 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.50 Total: -11.27 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.20 Total: -46.45 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.49 Total: -1.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.79 -10.71 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431172135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.282 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds