Wall clock time and date at job start Tue Mar 31 2020 12:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28670 * 124.92852 * 2 1 4 4 C 1.32518 * 117.87878 * 180.02562 * 3 2 1 5 5 C 1.34614 * 113.15818 * 0.02562 * 4 3 2 6 6 S 1.70913 * 124.93137 * 179.97438 * 2 1 3 7 7 C 1.51001 * 125.22502 * 179.97438 * 5 4 3 8 8 C 1.53272 * 108.57677 * 343.90083 * 7 5 4 9 9 C 1.53202 * 108.97009 * 49.31873 * 8 7 5 10 10 C 1.52136 * 124.20012 * 180.02562 * 4 3 2 11 11 H 1.09001 * 109.59165 * 282.40664 * 10 4 3 12 12 C 1.50697 * 109.59454 * 42.70724 * 10 4 3 13 13 O 1.21275 * 120.00356 * 85.33768 * 12 10 4 14 14 N 1.34781 * 120.00030 * 265.33962 * 12 10 4 15 15 C 1.46490 * 120.00240 * 185.04919 * 14 12 10 16 16 C 1.52998 * 109.47314 * 174.69523 * 15 14 12 17 17 C 1.50703 * 115.55055 * 303.69571 * 16 15 14 18 18 H 1.07998 * 119.99798 * 144.38544 * 17 16 15 19 19 C 1.37878 * 119.99892 * 324.38650 * 17 16 15 20 20 N 1.31516 * 119.99970 * 349.62592 * 19 17 16 21 21 Si 1.86797 * 119.99919 * 169.62530 * 19 17 16 22 22 H 1.48498 * 109.47196 * 65.00069 * 21 19 17 23 23 H 1.48501 * 109.47306 * 185.00307 * 21 19 17 24 24 H 1.48498 * 109.47192 * 305.00034 * 21 19 17 25 25 C 1.53003 * 117.49822 * 158.02616 * 16 15 14 26 26 C 1.52996 * 117.49924 * 89.36902 * 16 15 14 27 27 H 1.09006 * 109.46779 * 184.95864 * 1 2 3 28 28 H 1.08999 * 109.46968 * 304.95944 * 1 2 3 29 29 H 1.08998 * 109.47104 * 64.96368 * 1 2 3 30 30 H 1.09003 * 109.61717 * 103.62992 * 7 5 4 31 31 H 1.09000 * 109.61320 * 223.98556 * 7 5 4 32 32 H 1.08995 * 109.55325 * 169.15444 * 8 7 5 33 33 H 1.09004 * 109.54751 * 289.44040 * 8 7 5 34 34 H 1.08999 * 109.46998 * 169.60528 * 9 8 7 35 35 H 1.09005 * 109.50197 * 49.58669 * 9 8 7 36 36 H 0.97003 * 119.99975 * 5.31580 * 14 12 10 37 37 H 1.09006 * 109.47292 * 294.69337 * 15 14 12 38 38 H 1.09005 * 109.47310 * 54.69183 * 15 14 12 39 39 H 0.97001 * 119.99874 * 185.03748 * 20 19 17 40 40 H 1.08996 * 117.50251 * 0.02562 * 25 16 15 41 41 H 1.09009 * 117.49778 * 145.02048 * 25 16 15 42 42 H 1.09006 * 117.49911 * 214.97737 * 26 16 15 43 43 H 1.09006 * 117.50123 * 359.97159 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5589 0.8923 -0.0005 5 6 3.9324 -0.4010 -0.0015 6 16 2.4857 -1.4012 0.0006 7 6 5.3591 -0.8955 -0.0029 8 6 6.2773 0.2637 -0.4058 9 6 5.9250 1.4940 0.4365 10 6 4.5620 2.0361 0.0000 11 1 4.6368 2.4571 -1.0027 12 6 4.1112 3.1033 0.9638 13 8 4.3949 3.0174 2.1397 14 7 3.3925 4.1531 0.5189 15 6 3.0488 5.2454 1.4325 16 6 2.3521 6.3623 0.6529 17 6 3.1246 6.9193 -0.5151 18 1 2.6034 7.2290 -1.4089 19 6 4.4968 7.0333 -0.4427 20 7 5.1120 6.8522 0.7055 21 14 5.4819 7.4451 -1.9754 22 1 5.1269 8.8100 -2.4402 23 1 6.9323 7.3909 -1.6610 24 1 5.1700 6.4616 -3.0434 25 6 1.4699 7.3312 1.4429 26 6 0.8295 6.2892 0.5225 27 1 -0.3633 -1.0239 0.0888 28 1 -0.3633 0.5888 0.8422 29 1 -0.3633 0.4349 -0.9311 30 1 5.6264 -1.2446 0.9946 31 1 5.4624 -1.7130 -0.7165 32 1 7.3160 -0.0148 -0.2278 33 1 6.1352 0.4913 -1.4623 34 1 6.6846 2.2624 0.2927 35 1 5.8853 1.2149 1.4894 36 1 3.0996 4.1836 -0.4054 37 1 2.3805 4.8729 2.2090 38 1 3.9576 5.6348 1.8915 39 1 6.0677 7.0038 0.7729 40 1 1.3862 7.1731 2.5181 41 1 1.4480 8.3714 1.1175 42 1 0.3864 6.6443 -0.4080 43 1 0.3240 5.4451 0.9917 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431172135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:52 Heat of formation + Delta-G solvation = -4.525785 kcal Electronic energy + Delta-G solvation = -25265.574864 eV Core-core repulsion = 21822.641278 eV Total energy + Delta-G solvation = -3442.933586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66029 -40.08761 -38.51512 -37.29034 -34.77283 -34.14850 -32.46011 -32.25235 -29.00719 -27.93952 -27.23089 -25.02064 -24.31150 -23.00018 -22.14704 -21.25612 -21.07307 -19.45488 -19.15959 -18.36875 -17.69535 -16.78045 -16.55346 -16.42740 -15.97809 -15.52595 -15.45328 -15.18211 -15.00950 -14.77041 -14.59679 -14.17683 -13.76470 -13.64070 -13.51980 -13.32495 -13.22611 -12.90479 -12.85645 -12.75631 -12.63051 -12.32651 -12.20253 -12.07152 -11.84043 -11.55683 -11.46314 -11.08504 -10.79139 -10.64365 -10.46470 -10.14572 -10.10176 -9.66505 -9.48692 -8.01626 -6.18580 -0.27172 0.37332 0.68538 1.42334 1.44749 1.51942 1.66426 1.85791 2.40957 2.54943 2.99285 3.05370 3.62222 3.69283 3.73780 3.87837 4.01084 4.05196 4.22918 4.29696 4.32948 4.37946 4.50971 4.59786 4.64622 4.65267 4.73114 4.76968 4.88252 4.91355 4.92832 5.02470 5.08121 5.09014 5.11183 5.24191 5.29073 5.35003 5.50014 5.57175 5.83681 5.93723 6.37188 6.76786 6.81022 6.93032 7.44565 7.48531 8.93142 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004612 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.888914 B = 6069.296013 C = 7211.171717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.032 3.968 3 N -0.506 5.506 4 C 0.053 3.947 5 C -0.223 4.223 6 S 0.167 5.833 7 C -0.041 4.041 8 C -0.105 4.105 9 C -0.103 4.103 10 C -0.023 4.023 11 H 0.105 0.895 12 C 0.521 3.479 13 O -0.602 6.602 14 N -0.677 5.677 15 C 0.174 3.826 16 C 0.011 3.989 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.038 3.962 20 N -0.895 5.895 21 Si 0.946 3.054 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.197 4.197 26 C -0.184 4.184 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.009 0.991 38 H 0.080 0.920 39 H 0.259 0.741 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -19.698 -5.344 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.246 4.246 3 N -0.221 5.221 4 C -0.078 4.078 5 C -0.344 4.344 6 S 0.424 5.576 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.047 4.047 11 H 0.123 0.877 12 C 0.307 3.693 13 O -0.485 6.485 14 N -0.322 5.322 15 C 0.050 3.950 16 C 0.011 3.989 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.164 4.164 20 N -0.532 5.532 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.235 4.235 26 C -0.222 4.222 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.235 0.765 37 H 0.027 0.973 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.578 -20.366 -4.454 21.006 hybrid contribution 0.721 1.848 -0.649 2.088 sum -1.857 -18.517 -5.103 19.297 Atomic orbital electron populations 1.20567 0.83135 1.05063 1.04639 1.27367 1.03061 0.90889 1.03286 1.65736 1.05305 1.34049 1.17031 1.20270 0.89082 0.93408 1.05016 1.26405 1.02335 0.95253 1.10415 1.83302 0.95364 1.10539 1.68425 1.20381 0.85016 0.98756 1.03857 1.21625 1.00551 0.92334 0.99827 1.21483 0.92579 0.99177 1.00925 1.20109 0.94502 0.90702 0.99427 0.87664 1.20582 0.77463 0.82622 0.88649 1.90563 1.59541 1.78846 1.19563 1.45626 1.52546 1.19503 1.14553 1.20694 0.99256 0.85035 0.90046 1.19239 0.88023 0.94928 0.96754 1.20610 0.91379 1.42955 0.99389 0.92362 1.25579 0.98450 0.94351 0.98030 1.69980 1.10036 1.47902 1.25255 0.85791 0.77470 0.78946 0.80582 1.20072 1.21402 1.18943 1.22920 1.08750 0.95859 0.95995 1.22901 0.97669 1.00793 1.00793 0.87456 0.90073 0.88737 0.89070 0.87285 0.87656 0.90518 0.90962 0.91919 0.76474 0.97292 0.90189 0.93099 0.90986 0.90362 0.89620 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.47 71.24 0.75 -0.59 16 2 C 0.03 0.84 7.38 88.57 0.65 1.49 16 3 N -0.51 -17.22 10.23 -177.08 -1.81 -19.03 16 4 C 0.05 1.74 6.21 42.09 0.26 2.00 16 5 C -0.22 -5.64 6.39 24.95 0.16 -5.48 16 6 S 0.17 3.40 23.16 -56.49 -1.31 2.09 16 7 C -0.04 -0.73 6.28 30.03 0.19 -0.55 16 8 C -0.10 -2.01 5.95 30.75 0.18 -1.83 16 9 C -0.10 -3.05 4.98 30.68 0.15 -2.89 16 10 C -0.02 -0.83 2.88 -11.81 -0.03 -0.86 16 11 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 12 C 0.52 23.71 6.63 87.66 0.58 24.29 16 13 O -0.60 -31.79 16.08 -3.01 -0.05 -31.84 16 14 N -0.68 -31.70 5.34 -463.08 -2.47 -34.17 16 15 C 0.17 8.93 4.80 86.38 0.41 9.34 16 16 C 0.01 0.55 1.91 -52.93 -0.10 0.45 16 17 C -0.51 -26.43 8.52 25.60 0.22 -26.21 16 18 H 0.06 3.00 7.84 -2.91 -0.02 2.98 16 19 C 0.04 1.97 5.24 84.65 0.44 2.42 16 20 N -0.89 -50.06 10.72 21.45 0.23 -49.83 16 21 Si 0.95 41.63 29.55 68.60 2.03 43.66 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 C -0.20 -8.95 9.96 30.62 0.30 -8.64 16 26 C -0.18 -7.86 9.93 30.62 0.30 -7.55 16 27 H 0.11 1.22 8.13 -2.38 -0.02 1.20 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.39 8.11 -2.38 -0.02 1.37 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.09 7.50 -2.38 -0.02 2.07 16 36 H 0.40 18.04 8.20 -92.71 -0.76 17.28 16 37 H 0.01 0.47 8.10 -2.38 -0.02 0.45 16 38 H 0.08 4.71 5.88 -2.38 -0.01 4.69 16 39 H 0.26 14.15 8.32 -92.71 -0.77 13.37 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 42 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 43 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -69.04 365.57 1.36 -67.68 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.26 Total: 36.06 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 4.48 Total: -14.62 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -4.05 Total: -103.03 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -0.05 Total: -31.84 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.31 Total: 2.09 kcal Total: -69.04 1.36 -67.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431172135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds