Wall clock time and date at job start Tue Mar 31 2020 12:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38423 * 122.53796 * 2 1 4 4 C 1.33390 * 114.91764 * 180.27220 * 3 2 1 5 5 S 1.75887 * 109.59564 * 359.76939 * 4 3 2 6 6 C 1.33391 * 122.53753 * 179.82751 * 2 1 3 7 7 C 1.50697 * 125.20337 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.47466 * 89.71858 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21273 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00054 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.47066 * 89.99681 * 13 12 10 15 15 H 1.08001 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00127 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00059 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00144 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47035 * 89.99867 * 18 16 14 20 20 H 1.48496 * 109.47390 * 210.00116 * 18 16 14 21 21 H 1.48496 * 109.47004 * 330.00404 * 18 16 14 22 22 C 1.46505 * 120.00050 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.47201 * 89.99866 * 22 12 10 24 24 C 1.47198 * 109.47154 * 179.97438 * 23 22 12 25 25 N 9.13624 * 65.56167 * 177.21988 * 2 1 3 26 26 H 1.08994 * 109.47308 * 270.17493 * 1 2 3 27 27 H 1.08997 * 109.47040 * 30.17553 * 1 2 3 28 28 H 1.09003 * 109.46899 * 150.16745 * 1 2 3 29 29 H 1.07997 * 122.54089 * 0.03744 * 3 2 1 30 30 H 1.07998 * 125.20343 * 179.74339 * 4 3 2 31 31 H 1.09002 * 109.47120 * 329.71610 * 7 6 2 32 32 H 1.08998 * 109.46862 * 209.72413 * 7 6 2 33 33 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 35 35 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 37 37 H 1.08998 * 109.47205 * 209.99546 * 13 12 10 38 38 H 1.08997 * 109.47416 * 330.00406 * 13 12 10 39 39 H 0.97001 * 120.00292 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47101 * 210.00301 * 22 12 10 41 41 H 1.09003 * 109.46885 * 329.99908 * 22 12 10 42 42 H 1.08996 * 109.47448 * 300.00222 * 23 22 12 43 43 H 1.09001 * 109.46659 * 60.00103 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7305 -0.0049 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5192 0.0070 8 6 1.4544 -2.9926 -1.4342 9 6 0.8743 -4.4083 -1.4303 10 6 0.6787 -4.8748 -2.8500 11 8 0.9737 -4.1464 -3.7737 12 7 0.1748 -6.1010 -3.0930 13 6 -0.0159 -6.5543 -4.4730 14 6 1.2333 -7.2488 -4.9507 15 1 2.0840 -7.3435 -4.2921 16 6 1.2898 -7.7643 -6.2282 17 7 0.2537 -7.6495 -7.0300 18 14 2.8379 -8.6259 -6.8202 19 1 2.7488 -10.0747 -6.5066 20 1 2.9751 -8.4446 -8.2876 21 1 4.0206 -8.0435 -6.1367 22 6 -0.1821 -6.9806 -1.9771 23 6 -1.6410 -6.7394 -1.5840 24 6 -1.9998 -7.6236 -0.4632 25 7 -2.2727 -8.3079 0.4034 26 1 -0.3633 0.0031 1.0276 27 1 -0.3633 0.8884 -0.5165 28 1 -0.3633 -0.8915 -0.5112 29 1 1.7965 2.1464 0.0006 30 1 4.3078 1.7822 -0.0106 31 1 0.6945 -2.5179 0.5249 32 1 2.3418 -3.1920 0.5187 33 1 2.4136 -2.9939 -1.9520 34 1 0.7663 -2.3196 -1.9457 35 1 1.5621 -5.0815 -0.9187 36 1 -0.0848 -4.4066 -0.9126 37 1 -0.8558 -7.2477 -4.5148 38 1 -0.2212 -5.6957 -5.1123 39 1 0.2933 -8.0125 -7.9287 40 1 -0.0542 -8.0202 -2.2787 41 1 0.4638 -6.7673 -1.1254 42 1 -1.7689 -5.6998 -1.2824 43 1 -2.2868 -6.9527 -2.4358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439114389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:53 Heat of formation + Delta-G solvation = -17.210981 kcal Electronic energy + Delta-G solvation = -23666.985068 eV Core-core repulsion = 20223.501411 eV Total energy + Delta-G solvation = -3443.483657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76120 -39.38449 -37.93752 -36.68173 -35.65195 -34.79992 -32.17793 -31.88344 -30.24149 -28.93483 -26.67168 -25.26788 -24.69314 -23.46797 -22.32149 -19.84970 -19.19109 -18.79983 -18.32489 -18.11742 -17.60078 -16.98293 -16.59036 -16.23706 -15.93295 -15.60234 -15.29482 -14.90799 -14.72488 -14.36695 -14.33828 -13.84907 -13.80700 -13.62285 -13.48718 -13.24929 -13.21592 -13.08787 -12.86901 -12.74746 -12.66035 -12.52043 -12.45389 -12.41173 -12.15752 -12.06316 -11.84751 -11.65875 -11.59929 -11.38901 -10.57797 -10.48595 -9.43145 -9.42285 -9.18710 -8.17277 -6.29561 0.14511 0.80574 1.17072 1.39248 1.41792 1.51078 1.73180 1.84203 1.87973 1.98512 2.35231 2.47907 3.12960 3.19696 3.81657 3.84590 4.10256 4.11508 4.14436 4.19208 4.31856 4.45462 4.55950 4.60970 4.68465 4.77069 4.77945 4.81133 4.89920 4.92469 4.96519 5.11016 5.17860 5.19722 5.21404 5.30390 5.37153 5.46704 5.61555 5.64155 5.75574 5.91827 6.14987 6.65314 6.78285 6.87027 7.36423 7.59790 8.89230 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003174 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.624858 B = 8818.676996 C =10617.011936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.220 4.220 5 S 0.058 5.942 6 C -0.184 4.184 7 C -0.041 4.041 8 C -0.091 4.091 9 C -0.130 4.130 10 C 0.498 3.502 11 O -0.595 6.595 12 N -0.600 5.600 13 C 0.259 3.741 14 C -0.540 4.540 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.113 3.887 23 C -0.038 4.038 24 C 0.247 3.753 25 N -0.491 5.491 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.181 0.819 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 13.829 18.456 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.355 4.355 5 S 0.323 5.677 6 C -0.301 4.301 7 C -0.080 4.080 8 C -0.130 4.130 9 C -0.169 4.169 10 C 0.288 3.712 11 O -0.475 6.475 12 N -0.331 5.331 13 C 0.138 3.862 14 C -0.579 4.579 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.011 4.011 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.169 5.169 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.159 0.841 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.473 12.290 19.083 22.746 hybrid contribution -0.185 0.587 -1.509 1.630 sum 1.288 12.878 17.574 21.825 Atomic orbital electron populations 1.20583 0.88399 1.03338 1.03042 1.19212 0.98664 0.91631 1.03690 1.20358 0.93004 1.00086 1.03525 1.25812 1.00352 0.98634 1.10684 1.84412 1.07349 1.02062 1.73840 1.24531 0.95119 1.00019 1.10438 1.20180 1.02352 0.89141 0.96371 1.21214 1.00721 0.95047 0.95998 1.21813 1.05610 0.97808 0.91702 1.21493 0.76211 0.80854 0.92689 1.90668 1.52097 1.55954 1.48806 1.48128 1.62201 1.15100 1.07647 1.18764 0.95615 0.93565 0.78293 1.21777 1.01114 1.36151 0.98841 0.92917 1.25728 0.99318 0.97047 0.96800 1.70022 1.31523 1.46914 1.08162 0.85571 0.79744 0.79133 0.77313 1.19161 1.21020 1.19934 1.21523 0.94105 0.95695 0.89800 1.19842 0.98197 0.98360 0.91463 1.29220 0.91848 0.92711 0.93279 1.81321 1.10521 1.11653 1.13424 0.89948 0.91015 0.91166 0.82621 0.80213 0.87427 0.89758 0.94129 0.92329 0.86827 0.85015 0.94927 0.98031 0.92606 0.90261 0.87128 0.84111 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.60 71.24 0.68 -0.65 16 2 C -0.12 -2.26 5.80 -20.92 -0.12 -2.38 16 3 C -0.14 -2.46 9.98 21.22 0.21 -2.25 16 4 C -0.22 -3.93 11.23 66.72 0.75 -3.18 16 5 S 0.06 1.21 23.33 -56.49 -1.32 -0.11 16 6 C -0.18 -3.72 5.76 24.59 0.14 -3.57 16 7 C -0.04 -0.69 5.07 29.85 0.15 -0.54 16 8 C -0.09 -2.10 4.49 30.59 0.14 -1.96 16 9 C -0.13 -2.69 4.25 29.85 0.13 -2.56 16 10 C 0.50 17.43 7.67 87.66 0.67 18.11 16 11 O -0.59 -28.16 15.56 -3.01 -0.05 -28.21 16 12 N -0.60 -21.04 2.46 -826.15 -2.03 -23.06 16 13 C 0.26 12.51 5.16 85.64 0.44 12.95 16 14 C -0.54 -29.34 9.39 25.60 0.24 -29.10 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.93 -54.04 13.29 21.44 0.28 -53.76 16 18 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.11 2.62 5.17 86.38 0.45 3.07 16 23 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 24 C 0.25 5.03 15.44 89.42 1.38 6.41 16 25 N -0.49 -13.06 18.55 20.02 0.37 -12.69 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.07 1.00 6.95 -2.39 -0.02 0.98 16 29 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.11 1.28 7.33 -2.39 -0.02 1.26 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 34 H 0.06 1.52 7.79 -2.39 -0.02 1.50 16 35 H 0.11 1.88 7.40 -2.39 -0.02 1.86 16 36 H 0.13 1.60 7.18 -2.39 -0.02 1.58 16 37 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 38 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 41 H 0.11 1.83 6.44 -2.39 -0.02 1.82 16 42 H 0.14 1.47 7.22 -2.39 -0.02 1.46 16 43 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.66 381.29 6.19 -70.46 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.01 Total: 6.52 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.90 Total: -5.11 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -1.37 Total: -89.51 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.05 Total: -28.21 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.32 Total: -0.11 kcal Total: -76.66 6.19 -70.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439114389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.253 kcal (2) G-P(sol) polarization free energy of solvation -76.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds