Wall clock time and date at job start Tue Mar 31 2020 12:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 C 1.52997 * 109.47286 * 239.99763 * 2 1 3 5 5 C 1.50704 * 109.46785 * 119.99836 * 2 1 3 6 6 N 1.29360 * 124.66931 * 59.97688 * 5 2 1 7 7 C 1.30944 * 117.50323 * 179.97438 * 6 5 2 8 8 C 1.37147 * 113.83058 * 359.97438 * 7 6 5 9 9 C 1.41651 * 126.19942 * 179.97438 * 8 7 6 10 10 C 1.35713 * 120.00027 * 129.70468 * 9 8 7 11 11 C 1.41339 * 120.00412 * 350.32047 * 10 9 8 12 12 O 1.21845 * 119.99912 * 354.50642 * 11 10 9 13 13 N 1.34768 * 120.00486 * 174.50909 * 11 10 9 14 14 C 1.36773 * 120.00516 * 183.35662 * 13 11 10 15 15 H 1.07998 * 119.99761 * 18.45164 * 14 13 11 16 16 C 1.39052 * 120.00082 * 198.45082 * 14 13 11 17 17 N 1.31371 * 120.00181 * 5.30803 * 16 14 13 18 18 Si 1.86804 * 119.99986 * 185.31044 * 16 14 13 19 19 H 1.48496 * 109.47430 * 59.99923 * 18 16 14 20 20 H 1.48498 * 109.47064 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46962 * 300.00098 * 18 16 14 22 22 C 1.46505 * 119.99650 * 3.62901 * 13 11 10 23 23 C 1.52999 * 117.49987 * 306.01384 * 22 13 11 24 24 C 1.53000 * 60.00062 * 252.51373 * 23 22 13 25 25 S 1.70916 * 124.66819 * 240.26561 * 5 2 1 26 26 H 1.09000 * 109.47909 * 300.00127 * 1 2 3 27 27 H 1.09004 * 109.46968 * 60.00678 * 1 2 3 28 28 H 1.08999 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46653 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46962 * 299.99562 * 3 2 1 31 31 H 1.08998 * 109.46752 * 59.99740 * 3 2 1 32 32 H 1.09000 * 109.47354 * 300.00009 * 4 2 1 33 33 H 1.08992 * 109.47284 * 60.00170 * 4 2 1 34 34 H 1.09005 * 109.46890 * 180.02562 * 4 2 1 35 35 H 1.07994 * 123.08829 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99571 * 309.70974 * 9 8 7 37 37 H 1.07998 * 119.99348 * 170.31766 * 10 9 8 38 38 H 0.97004 * 120.00139 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.54903 * 91.72347 * 22 13 11 40 40 H 1.08997 * 117.49836 * 359.97438 * 23 22 13 41 41 H 1.08994 * 117.49896 * 145.01885 * 23 22 13 42 42 H 1.09002 * 117.49377 * 252.51220 * 24 23 22 43 43 H 1.08999 * 117.52235 * 107.48321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7756 -1.9437 1.5245 7 6 2.2860 -2.4202 2.6322 8 6 3.0378 -1.5112 3.3318 9 6 3.7063 -1.7459 4.5584 10 6 5.0151 -1.4126 4.6925 11 6 5.7653 -1.0245 3.5592 12 8 5.2670 -1.0848 2.4489 13 7 7.0316 -0.5877 3.7066 14 6 7.7343 -0.1474 2.6189 15 1 7.2119 0.1340 1.7165 16 6 9.1210 -0.0620 2.6750 17 7 9.7640 -0.5016 3.7329 18 14 10.0698 0.6777 1.2460 19 1 9.6323 2.0810 1.0348 20 1 11.5230 0.6523 1.5506 21 1 9.8084 -0.1126 0.0162 22 6 7.6578 -0.5902 5.0311 23 6 6.9192 0.1268 6.1631 24 6 8.1858 0.7428 5.5654 25 16 3.0136 0.0046 2.4334 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7216 -1.2489 35 1 2.1295 -3.4358 2.9644 36 1 3.1745 -2.1902 5.3868 37 1 5.4832 -1.4440 5.6652 38 1 10.7314 -0.4424 3.7719 39 1 8.2162 -1.4910 5.2854 40 1 5.9676 0.6007 5.9222 41 1 6.9915 -0.3024 7.1623 42 1 9.0914 0.7188 6.1715 43 1 8.0677 1.6214 4.9313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491929784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:10 Heat of formation + Delta-G solvation = 68.333204 kcal Electronic energy + Delta-G solvation = -25160.067625 eV Core-core repulsion = 21720.293442 eV Total energy + Delta-G solvation = -3439.774183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.35012 -38.93540 -36.69397 -36.02573 -33.67032 -32.63985 -31.26112 -28.45491 -27.28606 -27.10459 -25.80009 -24.60497 -22.49460 -21.51012 -21.12983 -20.62646 -18.97341 -17.86231 -17.09122 -16.72146 -16.15012 -15.26837 -14.87135 -14.55488 -14.30457 -14.22491 -13.97675 -13.72590 -13.43235 -13.03285 -12.93146 -12.76215 -12.44661 -12.12905 -12.02008 -11.73514 -11.54954 -11.31989 -11.26865 -11.13045 -10.91794 -10.84012 -10.80270 -10.72500 -10.52757 -10.47047 -9.93950 -9.59802 -9.33039 -8.94948 -8.86460 -8.42716 -8.14843 -7.61238 -7.33899 -6.45011 -3.89747 0.90904 2.05826 2.36798 2.71073 3.13601 3.15658 3.19426 3.55010 4.00319 4.39279 4.50523 4.64360 4.80592 4.97922 5.07816 5.11843 5.28425 5.58379 5.63053 5.67098 5.71526 5.74296 5.75453 5.84685 5.94744 5.99362 6.02009 6.05956 6.11399 6.12547 6.19136 6.20627 6.31788 6.41137 6.48018 6.70943 6.78059 6.83278 6.89113 6.99381 7.16204 7.39057 7.98677 8.38130 8.47598 9.08246 9.29298 9.94319 10.53450 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.004557 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.886862 B = 6143.303316 C = 7334.877998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 C -0.154 4.154 4 C -0.132 4.132 5 C -0.001 4.001 6 N -0.477 5.477 7 C 0.027 3.973 8 C -0.171 4.171 9 C -0.068 4.068 10 C -0.156 4.156 11 C 0.445 3.555 12 O -0.582 6.582 13 N -0.399 5.399 14 C -0.289 4.289 15 H 0.104 0.896 16 C 0.034 3.966 17 N -0.859 5.859 18 Si 0.927 3.073 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.135 3.865 23 C -0.230 4.230 24 C -0.135 4.135 25 S 0.232 5.768 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.271 0.729 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 2.817 1.185 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.013 3.987 3 C -0.212 4.212 4 C -0.191 4.191 5 C -0.274 4.274 6 N -0.192 5.192 7 C -0.129 4.129 8 C -0.294 4.294 9 C -0.093 4.093 10 C -0.182 4.182 11 C 0.239 3.761 12 O -0.471 6.471 13 N -0.114 5.114 14 C -0.417 4.417 15 H 0.122 0.878 16 C -0.172 4.172 17 N -0.496 5.496 18 Si 0.754 3.246 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.197 1.197 22 C 0.030 3.970 23 C -0.268 4.268 24 C -0.172 4.172 25 S 0.495 5.505 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.438 3.564 0.432 11.038 hybrid contribution 0.953 -0.806 -0.050 1.249 sum -9.485 2.758 0.382 9.885 Atomic orbital electron populations 1.21802 0.93232 1.02548 1.01299 1.19027 0.95691 0.93717 0.90240 1.22010 1.02254 0.94600 1.02323 1.21802 1.01583 1.00628 0.95048 1.26769 1.03076 0.94890 1.02708 1.65641 1.24158 1.11805 1.17556 1.22010 0.99458 1.00088 0.91368 1.23597 1.05603 0.98203 1.01981 1.20198 0.93929 1.00696 0.94440 1.22687 0.94750 1.00951 0.99764 1.16751 0.83584 0.86095 0.89646 1.90794 1.69582 1.59682 1.27021 1.43377 1.10946 1.51198 1.05894 1.19747 0.88923 1.39129 0.93944 0.87796 1.25382 0.96820 0.96960 0.98061 1.69916 1.09083 1.42676 1.27934 0.85960 0.78038 0.79615 0.81006 1.19741 1.20741 1.19660 1.21141 0.97031 0.97220 0.81653 1.23693 0.97532 1.07319 0.98235 1.22686 0.94783 0.98004 1.01766 1.83451 1.39882 1.12333 1.14846 0.92881 0.92345 0.91767 0.91506 0.91317 0.92218 0.91841 0.92446 0.92312 0.82062 0.85429 0.85369 0.91858 0.87118 0.89578 0.89259 0.89586 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.45 37.16 0.31 -1.26 16 2 C 0.02 0.24 0.99 -155.66 -0.15 0.09 16 3 C -0.15 -1.97 7.53 37.16 0.28 -1.69 16 4 C -0.13 -1.85 8.45 37.16 0.31 -1.54 16 5 C 0.00 -0.03 5.77 -13.32 -0.08 -0.10 16 6 N -0.48 -9.03 10.47 -11.17 -0.12 -9.15 16 7 C 0.03 0.50 11.39 -18.33 -0.21 0.29 16 8 C -0.17 -3.27 4.42 -38.68 -0.17 -3.44 16 9 C -0.07 -1.19 9.92 -39.18 -0.39 -1.58 16 10 C -0.16 -3.02 8.17 -39.31 -0.32 -3.34 16 11 C 0.45 10.59 6.99 -15.08 -0.11 10.48 16 12 O -0.58 -15.23 11.55 5.06 0.06 -15.17 16 13 N -0.40 -9.77 2.93 -111.03 -0.33 -10.10 16 14 C -0.29 -7.63 9.22 -15.05 -0.14 -7.77 16 15 H 0.10 2.90 7.34 -52.49 -0.39 2.51 16 16 C 0.03 0.83 5.10 -17.45 -0.09 0.74 16 17 N -0.86 -21.14 9.75 55.50 0.54 -20.60 16 18 Si 0.93 19.92 29.56 -169.99 -5.02 14.89 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.13 2.88 3.51 -67.93 -0.24 2.64 16 23 C -0.23 -3.96 7.92 -26.73 -0.21 -4.17 16 24 C -0.13 -2.64 8.53 -26.73 -0.23 -2.87 16 25 S 0.23 4.36 18.40 -107.50 -1.98 2.39 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 36 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.13 2.18 5.36 -52.49 -0.28 1.90 16 38 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 39 H 0.11 2.48 7.81 -51.93 -0.41 2.07 16 40 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -29.28 359.86 -9.33 -38.61 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.48 Total: 7.20 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.42 Total: -13.49 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.10 Total: -39.85 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.06 Total: -15.17 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.98 Total: 2.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.28 -9.33 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491929784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.946 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds