Wall clock time and date at job start Tue Mar 31 2020 12:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 C 1.52997 * 109.47286 * 239.99763 * 2 1 3 5 5 C 1.50704 * 109.46785 * 119.99836 * 2 1 3 6 6 N 1.29360 * 124.66931 * 59.97688 * 5 2 1 7 7 C 1.30944 * 117.50323 * 179.97438 * 6 5 2 8 8 C 1.37147 * 113.83058 * 359.97438 * 7 6 5 9 9 C 1.41651 * 126.19942 * 179.97438 * 8 7 6 10 10 C 1.35713 * 120.00027 * 129.70468 * 9 8 7 11 11 C 1.41339 * 120.00412 * 350.32047 * 10 9 8 12 12 O 1.21845 * 119.99912 * 354.50642 * 11 10 9 13 13 N 1.34768 * 120.00486 * 174.50909 * 11 10 9 14 14 C 1.36773 * 120.00516 * 183.35662 * 13 11 10 15 15 H 1.07998 * 119.99761 * 18.45164 * 14 13 11 16 16 C 1.39052 * 120.00082 * 198.45082 * 14 13 11 17 17 N 1.31371 * 120.00181 * 5.30803 * 16 14 13 18 18 Si 1.86804 * 119.99986 * 185.31044 * 16 14 13 19 19 H 1.48496 * 109.47430 * 59.99923 * 18 16 14 20 20 H 1.48498 * 109.47064 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46962 * 300.00098 * 18 16 14 22 22 C 1.46505 * 119.99650 * 3.62901 * 13 11 10 23 23 C 1.52999 * 117.49987 * 306.01384 * 22 13 11 24 24 C 1.53000 * 60.00062 * 252.51373 * 23 22 13 25 25 S 1.70916 * 124.66819 * 240.26561 * 5 2 1 26 26 H 1.09000 * 109.47909 * 300.00127 * 1 2 3 27 27 H 1.09004 * 109.46968 * 60.00678 * 1 2 3 28 28 H 1.08999 * 109.47417 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46653 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46962 * 299.99562 * 3 2 1 31 31 H 1.08998 * 109.46752 * 59.99740 * 3 2 1 32 32 H 1.09000 * 109.47354 * 300.00009 * 4 2 1 33 33 H 1.08992 * 109.47284 * 60.00170 * 4 2 1 34 34 H 1.09005 * 109.46890 * 180.02562 * 4 2 1 35 35 H 1.07994 * 123.08829 * 179.97438 * 7 6 5 36 36 H 1.08003 * 119.99571 * 309.70974 * 9 8 7 37 37 H 1.07998 * 119.99348 * 170.31766 * 10 9 8 38 38 H 0.97004 * 120.00139 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.54903 * 91.72347 * 22 13 11 40 40 H 1.08997 * 117.49836 * 359.97438 * 23 22 13 41 41 H 1.08994 * 117.49896 * 145.01885 * 23 22 13 42 42 H 1.09002 * 117.49377 * 252.51220 * 24 23 22 43 43 H 1.08999 * 117.52235 * 107.48321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 7 1.7756 -1.9437 1.5245 7 6 2.2860 -2.4202 2.6322 8 6 3.0378 -1.5112 3.3318 9 6 3.7063 -1.7459 4.5584 10 6 5.0151 -1.4126 4.6925 11 6 5.7653 -1.0245 3.5592 12 8 5.2670 -1.0848 2.4489 13 7 7.0316 -0.5877 3.7066 14 6 7.7343 -0.1474 2.6189 15 1 7.2119 0.1340 1.7165 16 6 9.1210 -0.0620 2.6750 17 7 9.7640 -0.5016 3.7329 18 14 10.0698 0.6777 1.2460 19 1 9.6323 2.0810 1.0348 20 1 11.5230 0.6523 1.5506 21 1 9.8084 -0.1126 0.0162 22 6 7.6578 -0.5902 5.0311 23 6 6.9192 0.1268 6.1631 24 6 8.1858 0.7428 5.5654 25 16 3.0136 0.0046 2.4334 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7216 -1.2489 35 1 2.1295 -3.4358 2.9644 36 1 3.1745 -2.1902 5.3868 37 1 5.4832 -1.4440 5.6652 38 1 10.7314 -0.4424 3.7719 39 1 8.2162 -1.4910 5.2854 40 1 5.9676 0.6007 5.9222 41 1 6.9915 -0.3024 7.1623 42 1 9.0914 0.7188 6.1715 43 1 8.0677 1.6214 4.9313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491929784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:09 Heat of formation + Delta-G solvation = 52.865396 kcal Electronic energy + Delta-G solvation = -25160.738359 eV Core-core repulsion = 21720.293442 eV Total energy + Delta-G solvation = -3440.444918 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97649 -40.42573 -38.17809 -37.43795 -35.30231 -34.29221 -33.07069 -29.96125 -28.34103 -28.15990 -27.46898 -26.16481 -24.06018 -23.11207 -22.67298 -21.93322 -20.51879 -19.33038 -18.85406 -18.19524 -17.71931 -17.00301 -16.32093 -16.03104 -15.90436 -15.76214 -15.26660 -15.06519 -14.79913 -14.66180 -14.41607 -14.22301 -13.89920 -13.48893 -13.13324 -13.08678 -13.00030 -12.93184 -12.63767 -12.50155 -12.40669 -12.23455 -12.18988 -12.16552 -11.96690 -11.89150 -11.65242 -11.16104 -10.87361 -10.61500 -10.35875 -10.11027 -9.85552 -9.18684 -8.93713 -8.27809 -5.85691 -0.54832 0.62249 0.91112 1.23240 1.37829 1.41705 1.46330 2.08126 2.24442 2.63263 3.03446 3.20974 3.26073 3.28201 3.86082 3.98129 4.07957 4.13775 4.25657 4.26038 4.45092 4.46483 4.57225 4.63559 4.68459 4.72279 4.77390 4.82857 4.87026 4.94081 4.95732 5.03575 5.15006 5.16972 5.30490 5.32437 5.36572 5.40301 5.41003 5.42881 5.53023 5.61002 6.10052 6.55310 7.01195 7.21298 7.51094 8.12888 8.67744 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.004557 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.886862 B = 6143.303316 C = 7334.877998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.009 3.991 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.009 3.991 6 N -0.496 5.496 7 C 0.025 3.975 8 C -0.201 4.201 9 C -0.031 4.031 10 C -0.183 4.183 11 C 0.443 3.557 12 O -0.617 6.617 13 N -0.419 5.419 14 C -0.329 4.329 15 H 0.071 0.929 16 C 0.007 3.993 17 N -0.870 5.870 18 Si 0.978 3.022 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.282 1.282 22 C 0.111 3.889 23 C -0.185 4.185 24 C -0.139 4.139 25 S 0.202 5.798 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.031 0.969 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.273 0.727 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 2.912 2.130 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.005 3.995 3 C -0.209 4.209 4 C -0.187 4.187 5 C -0.264 4.264 6 N -0.211 5.211 7 C -0.130 4.130 8 C -0.323 4.323 9 C -0.054 4.054 10 C -0.207 4.207 11 C 0.238 3.762 12 O -0.507 6.507 13 N -0.134 5.134 14 C -0.458 4.458 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.507 5.507 18 Si 0.803 3.197 19 H -0.195 1.195 20 H -0.192 1.192 21 H -0.208 1.208 22 C 0.007 3.993 23 C -0.223 4.223 24 C -0.176 4.176 25 S 0.465 5.535 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.203 0.797 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.147 0.853 42 H 0.113 0.887 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.300 3.658 1.414 12.910 hybrid contribution 1.255 -0.918 -0.438 1.616 sum -11.044 2.740 0.976 11.421 Atomic orbital electron populations 1.21757 0.90919 1.02458 1.02993 1.19325 0.97468 0.94099 0.88589 1.22011 1.00700 0.94011 1.04163 1.21784 0.99836 1.00597 0.96453 1.27519 1.01391 0.94561 1.02939 1.65727 1.25123 1.12238 1.17985 1.22486 0.98402 1.01062 0.91094 1.23923 1.06698 0.98504 1.03154 1.20790 0.93137 0.96714 0.94739 1.22624 0.95330 1.03514 0.99280 1.17546 0.83617 0.84518 0.90559 1.90763 1.70406 1.60676 1.28850 1.43439 1.11266 1.52170 1.06552 1.19507 0.89773 1.42214 0.94301 0.91104 1.25892 0.96824 0.96985 0.99995 1.69993 1.09112 1.43062 1.28553 0.85222 0.77551 0.78743 0.78224 1.19523 1.19234 1.20809 1.21062 0.99334 0.97285 0.81665 1.23718 0.96147 1.04107 0.98313 1.22590 0.96757 0.96321 1.01972 1.83563 1.40727 1.13344 1.15891 0.92562 0.89313 0.92726 0.93929 0.88168 0.91697 0.92825 0.89024 0.94968 0.79688 0.80511 0.82795 0.91712 0.88712 0.89463 0.85277 0.88659 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.45 71.98 0.61 -2.05 16 2 C 0.01 0.25 0.99 -52.93 -0.05 0.19 16 3 C -0.15 -3.69 7.53 71.98 0.54 -3.14 16 4 C -0.13 -3.48 8.45 71.98 0.61 -2.87 16 5 C 0.01 0.32 5.77 88.47 0.51 0.83 16 6 N -0.50 -18.43 10.47 -189.24 -1.98 -20.41 16 7 C 0.03 0.91 11.39 84.57 0.96 1.87 16 8 C -0.20 -7.42 4.42 22.86 0.10 -7.32 16 9 C -0.03 -0.99 9.92 22.53 0.22 -0.76 16 10 C -0.18 -6.80 8.17 22.45 0.18 -6.62 16 11 C 0.44 21.52 6.99 85.01 0.59 22.11 16 12 O -0.62 -33.46 11.55 -4.81 -0.06 -33.52 16 13 N -0.42 -21.22 2.93 -623.35 -1.83 -23.04 16 14 C -0.33 -18.38 9.22 84.12 0.78 -17.60 16 15 H 0.07 4.28 7.34 -2.91 -0.02 4.26 16 16 C 0.01 0.37 5.10 84.96 0.43 0.81 16 17 N -0.87 -43.85 9.75 21.68 0.21 -43.64 16 18 Si 0.98 42.22 29.56 68.60 2.03 44.25 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.11 4.77 3.51 44.99 0.16 4.93 16 23 C -0.19 -6.00 7.92 30.59 0.24 -5.76 16 24 C -0.14 -5.42 8.53 30.59 0.26 -5.16 16 25 S 0.20 7.65 18.40 -56.49 -1.04 6.61 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.24 7.92 -2.39 -0.02 1.22 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.50 7.90 -2.39 -0.02 1.48 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.19 5.52 8.06 -2.91 -0.02 5.49 16 36 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.15 4.82 5.36 -2.91 -0.02 4.80 16 38 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 39 H 0.10 4.31 7.81 -2.39 -0.02 4.29 16 40 H 0.09 2.85 7.36 -2.39 -0.02 2.83 16 41 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -67.79 359.86 4.49 -63.30 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 1.00 Total: 26.99 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 6.15 Total: -20.53 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -3.60 Total: -87.10 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.06 Total: -33.52 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -1.04 Total: 6.61 kcal Total: -67.79 4.49 -63.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491929784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.169 kcal (2) G-P(sol) polarization free energy of solvation -67.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds