Wall clock time and date at job start Tue Mar 31 2020 12:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30953 * 123.07725 * 2 1 4 4 C 1.29354 * 117.49259 * 179.97438 * 3 2 1 5 5 S 1.70919 * 110.65205 * 359.97438 * 4 3 2 6 6 C 1.37071 * 123.07441 * 179.97438 * 2 1 3 7 7 C 1.41726 * 126.19119 * 0.05024 * 6 2 1 8 8 C 1.35557 * 120.00064 * 188.34039 * 7 6 2 9 9 C 1.41542 * 120.00041 * 30.69368 * 8 7 6 10 10 O 1.21776 * 120.00065 * 20.85070 * 9 8 7 11 11 N 1.34778 * 120.00414 * 200.85577 * 9 8 7 12 12 C 1.46933 * 120.62496 * 355.49689 * 11 9 8 13 13 C 1.53191 * 108.77000 * 126.37252 * 12 11 9 14 14 C 1.53038 * 109.31738 * 54.63289 * 13 12 11 15 15 C 1.53035 * 109.53807 * 298.63761 * 14 13 12 16 16 C 1.53005 * 109.49976 * 181.31400 * 15 14 13 17 17 C 1.53004 * 109.49748 * 301.37541 * 15 14 13 18 18 C 1.46918 * 120.63285 * 175.22130 * 11 9 8 19 19 C 1.50703 * 109.58796 * 353.41839 * 18 11 9 20 20 N 1.27945 * 119.99514 * 292.96458 * 19 18 11 21 21 Si 1.86800 * 119.99992 * 112.96877 * 19 18 11 22 22 H 1.48494 * 109.47257 * 359.97438 * 21 19 18 23 23 H 1.48496 * 109.47278 * 120.00175 * 21 19 18 24 24 H 1.48504 * 109.46911 * 239.99981 * 21 19 18 25 25 H 1.09007 * 109.46973 * 270.02549 * 1 2 3 26 26 H 1.09001 * 109.46861 * 30.02226 * 1 2 3 27 27 H 1.08993 * 109.47367 * 150.02276 * 1 2 3 28 28 H 1.08002 * 124.67977 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.00050 * 8.34693 * 7 6 2 30 30 H 1.08005 * 120.00043 * 210.68473 * 8 7 6 31 31 H 1.08997 * 109.58538 * 246.15654 * 12 11 9 32 32 H 1.08995 * 109.58430 * 6.44451 * 12 11 9 33 33 H 1.09001 * 109.49837 * 174.58723 * 13 12 11 34 34 H 1.09007 * 109.50132 * 294.64782 * 13 12 11 35 35 H 1.09002 * 109.45849 * 58.65559 * 14 13 12 36 36 H 1.09000 * 109.46202 * 178.62163 * 14 13 12 37 37 H 1.08999 * 109.46635 * 59.99647 * 16 15 14 38 38 H 1.08997 * 109.47270 * 179.97438 * 16 15 14 39 39 H 1.08995 * 109.46971 * 300.00075 * 16 15 14 40 40 H 1.09001 * 109.46709 * 59.99758 * 17 15 14 41 41 H 1.08993 * 109.47438 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46808 * 300.00180 * 17 15 14 43 43 H 1.09004 * 109.58715 * 113.84516 * 18 11 9 44 44 H 0.97000 * 119.99111 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0973 0.0000 4 6 3.5091 0.9714 0.0005 5 16 3.9534 -0.6790 0.0018 6 6 2.2550 -1.1486 0.0005 7 6 1.7532 -2.4741 0.0001 8 6 2.5995 -3.5192 0.1710 9 6 3.7667 -3.3636 0.9563 10 8 3.8363 -2.4618 1.7717 11 7 4.8013 -4.2135 0.8016 12 6 4.6956 -5.3640 -0.1061 13 6 5.8707 -5.3268 -1.0881 14 6 7.1836 -5.2630 -0.3044 15 6 7.2162 -3.9848 0.5365 16 6 8.5429 -3.9058 1.2945 17 6 7.0782 -2.7672 -0.3796 18 6 6.0582 -4.0036 1.5328 19 6 6.0030 -2.6877 2.2652 20 7 5.9767 -1.5904 1.6079 21 14 5.9730 -2.6589 4.1328 22 1 6.0107 -4.0503 4.6500 23 1 7.1535 -1.9113 4.6353 24 1 4.7302 -1.9920 4.5976 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 4.2071 1.7956 0.0010 29 1 0.6967 -2.6515 -0.1365 30 1 2.3829 -4.4707 -0.2920 31 1 4.7302 -6.2885 0.4702 32 1 3.7557 -5.3108 -0.6555 33 1 5.8583 -6.2256 -1.7046 34 1 5.7842 -4.4470 -1.7260 35 1 7.2577 -6.1309 0.3511 36 1 8.0224 -5.2611 -1.0004 37 1 9.3679 -3.8930 0.5823 38 1 8.5658 -2.9950 1.8929 39 1 8.6403 -4.7728 1.9478 40 1 6.1324 -2.8234 -0.9185 41 1 7.1018 -1.8571 0.2196 42 1 7.9024 -2.7538 -1.0927 43 1 6.2062 -4.8150 2.2455 44 1 5.9416 -0.7434 2.0794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493512180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:23 Heat of formation + Delta-G solvation = 96.726782 kcal Electronic energy + Delta-G solvation = -27356.835772 eV Core-core repulsion = 23904.637087 eV Total energy + Delta-G solvation = -3452.198684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08661 -40.55886 -39.37427 -36.62126 -35.28886 -34.85689 -32.60582 -32.10451 -29.26679 -28.10173 -27.74486 -26.76872 -25.74056 -24.14438 -23.28885 -21.38746 -20.63617 -19.75979 -19.22872 -18.32649 -18.02102 -17.76483 -16.95878 -16.60288 -16.04074 -15.78496 -15.74402 -15.27273 -14.84356 -14.82367 -14.71021 -14.35825 -14.19700 -14.11421 -14.00355 -13.69267 -13.37630 -13.29595 -13.20353 -13.00712 -12.88239 -12.56470 -12.38663 -12.26496 -12.12982 -11.97888 -11.75914 -11.58229 -11.44042 -11.36700 -11.25245 -10.33779 -10.12905 -9.67518 -9.40659 -8.96446 -8.87955 -0.95462 0.65517 0.86835 1.10370 1.14655 1.23467 1.50637 1.74509 1.99573 2.05923 2.29039 2.42120 3.38434 3.45077 3.65768 3.80976 3.88663 3.94343 3.96505 4.03729 4.15193 4.18973 4.30090 4.34982 4.41303 4.50953 4.57757 4.69035 4.69175 4.73030 4.73304 4.79881 4.91770 4.98133 5.02129 5.05056 5.10808 5.15739 5.17716 5.23396 5.26793 5.35722 5.43421 5.47818 5.59825 5.98262 6.44848 6.99189 7.09775 7.24532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.108 3.892 3 N -0.486 5.486 4 C -0.032 4.032 5 S 0.308 5.692 6 C -0.274 4.274 7 C 0.053 3.947 8 C -0.270 4.270 9 C 0.553 3.447 10 O -0.522 6.522 11 N -0.594 5.594 12 C 0.105 3.895 13 C -0.138 4.138 14 C -0.110 4.110 15 C -0.065 4.065 16 C -0.142 4.142 17 C -0.153 4.153 18 C 0.186 3.814 19 C 0.023 3.977 20 N -0.604 5.604 21 Si 0.940 3.060 22 H -0.243 1.243 23 H -0.250 1.250 24 H -0.243 1.243 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.191 0.809 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.103 0.897 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -5.054 -1.844 5.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 N -0.201 5.201 4 C -0.323 4.323 5 S 0.569 5.431 6 C -0.396 4.396 7 C 0.031 3.969 8 C -0.294 4.294 9 C 0.346 3.654 10 O -0.401 6.401 11 N -0.328 5.328 12 C -0.017 4.017 13 C -0.176 4.176 14 C -0.148 4.148 15 C -0.066 4.066 16 C -0.200 4.200 17 C -0.210 4.210 18 C 0.083 3.917 19 C -0.223 4.223 20 N -0.223 5.223 21 Si 0.757 3.243 22 H -0.165 1.165 23 H -0.173 1.173 24 H -0.166 1.166 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.208 0.792 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.322 -4.250 -1.515 5.075 hybrid contribution -0.985 0.119 0.473 1.099 sum 1.337 -4.131 -1.042 4.466 Atomic orbital electron populations 1.20421 0.87202 1.03509 1.03161 1.21097 0.97875 0.86057 0.98287 1.65963 1.05289 1.32024 1.16850 1.28909 0.95557 1.04173 1.03652 1.85190 1.01582 0.97729 1.58637 1.24032 0.98538 0.98270 1.18712 1.20502 0.98556 0.88735 0.89137 1.21995 0.98410 1.02029 1.06949 1.17072 0.82802 0.81158 0.84328 1.90775 1.80077 1.32736 1.36553 1.48089 1.12331 1.27841 1.44492 1.21864 0.99836 0.88258 0.91766 1.21980 0.94512 1.03099 0.98048 1.21613 0.97557 0.96931 0.98688 1.20715 0.93692 0.96852 0.95378 1.21849 0.95997 1.01921 1.00245 1.22363 1.00451 0.99184 0.99014 1.20439 0.83995 0.94608 0.92687 1.29589 0.91879 0.94927 1.05921 1.67923 1.09684 1.02035 1.42632 0.85640 0.81646 0.82719 0.74313 1.16508 1.17332 1.16583 0.90266 0.90286 0.90585 0.79245 0.83998 0.83979 0.91006 0.89259 0.90596 0.90752 0.91721 0.91242 0.91966 0.92414 0.92417 0.92771 0.87946 0.94222 0.89714 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 10.07 36.00 0.36 0.30 16 2 C 0.11 0.39 6.85 -83.39 -0.57 -0.18 16 3 N -0.49 -2.45 10.49 -11.23 -0.12 -2.57 16 4 C -0.03 -0.10 12.20 51.72 0.63 0.54 16 5 S 0.31 0.69 16.16 -107.50 -1.74 -1.05 16 6 C -0.27 -0.77 5.58 -38.67 -0.22 -0.98 16 7 C 0.05 0.03 9.31 -39.21 -0.37 -0.33 16 8 C -0.27 -0.02 8.87 -39.28 -0.35 -0.36 16 9 C 0.55 0.84 5.67 -15.00 -0.09 0.75 16 10 O -0.52 -1.93 8.78 5.12 0.04 -1.88 16 11 N -0.59 0.18 2.42 -170.20 -0.41 -0.23 16 12 C 0.11 -0.28 6.33 -3.71 -0.02 -0.30 16 13 C -0.14 0.37 5.74 -26.61 -0.15 0.22 16 14 C -0.11 0.24 4.71 -26.69 -0.13 0.12 16 15 C -0.06 0.08 0.55 -154.61 -0.08 -0.01 16 16 C -0.14 0.23 8.30 37.16 0.31 0.54 16 17 C -0.15 0.00 7.22 37.16 0.27 0.27 16 18 C 0.19 -0.07 2.22 -68.98 -0.15 -0.22 16 19 C 0.02 0.02 1.50 -13.90 -0.02 0.00 16 20 N -0.60 -0.54 5.42 56.23 0.30 -0.23 16 21 Si 0.94 1.11 28.58 -169.99 -4.86 -3.74 16 22 H -0.24 -0.25 7.11 56.52 0.40 0.15 16 23 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 24 H -0.24 -0.89 7.11 56.52 0.40 -0.49 16 25 H 0.08 0.03 8.14 -51.92 -0.42 -0.39 16 26 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.08 -0.11 7.04 -51.93 -0.37 -0.48 16 28 H 0.19 0.05 8.06 -52.49 -0.42 -0.37 16 29 H 0.14 -0.28 7.08 -52.49 -0.37 -0.66 16 30 H 0.14 -0.37 6.09 -52.48 -0.32 -0.69 16 31 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.09 -0.33 5.41 -51.93 -0.28 -0.61 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 34 H 0.07 -0.11 6.34 -51.93 -0.33 -0.44 16 35 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 36 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 37 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 38 H 0.06 -0.07 7.41 -51.93 -0.38 -0.45 16 39 H 0.06 -0.13 8.14 -51.93 -0.42 -0.56 16 40 H 0.05 0.05 5.98 -51.93 -0.31 -0.26 16 41 H 0.10 0.07 4.94 -52.07 -0.26 -0.18 16 42 H 0.04 0.01 8.14 -51.93 -0.42 -0.42 16 43 H 0.09 -0.11 7.54 -51.93 -0.39 -0.50 16 44 H 0.33 0.16 8.22 -40.82 -0.34 -0.18 16 LS Contribution 335.66 15.07 5.06 5.06 Total: 0.00 -5.48 335.66 -8.66 -14.14 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: -6.37 Total: -9.83 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.57 Total: 0.34 kcal Atomic # 7 Polarization: -2.81 SS G_CDS: -0.22 Total: -3.04 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 1.11 SS G_CDS: -4.86 Total: -3.74 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.74 Total: -1.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -5.48 -8.66 -14.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493512180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.865 kcal (2) G-P(sol) polarization free energy of solvation -5.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds