Wall clock time and date at job start Tue Mar 31 2020 12:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30953 * 123.07725 * 2 1 4 4 C 1.29354 * 117.49259 * 179.97438 * 3 2 1 5 5 S 1.70919 * 110.65205 * 359.97438 * 4 3 2 6 6 C 1.37071 * 123.07441 * 179.97438 * 2 1 3 7 7 C 1.41726 * 126.19119 * 0.05024 * 6 2 1 8 8 C 1.35557 * 120.00064 * 188.34039 * 7 6 2 9 9 C 1.41542 * 120.00041 * 30.69368 * 8 7 6 10 10 O 1.21776 * 120.00065 * 20.85070 * 9 8 7 11 11 N 1.34778 * 120.00414 * 200.85577 * 9 8 7 12 12 C 1.46933 * 120.62496 * 355.49689 * 11 9 8 13 13 C 1.53191 * 108.77000 * 126.37252 * 12 11 9 14 14 C 1.53038 * 109.31738 * 54.63289 * 13 12 11 15 15 C 1.53035 * 109.53807 * 298.63761 * 14 13 12 16 16 C 1.53005 * 109.49976 * 181.31400 * 15 14 13 17 17 C 1.53004 * 109.49748 * 301.37541 * 15 14 13 18 18 C 1.46918 * 120.63285 * 175.22130 * 11 9 8 19 19 C 1.50703 * 109.58796 * 353.41839 * 18 11 9 20 20 N 1.27945 * 119.99514 * 292.96458 * 19 18 11 21 21 Si 1.86800 * 119.99992 * 112.96877 * 19 18 11 22 22 H 1.48494 * 109.47257 * 359.97438 * 21 19 18 23 23 H 1.48496 * 109.47278 * 120.00175 * 21 19 18 24 24 H 1.48504 * 109.46911 * 239.99981 * 21 19 18 25 25 H 1.09007 * 109.46973 * 270.02549 * 1 2 3 26 26 H 1.09001 * 109.46861 * 30.02226 * 1 2 3 27 27 H 1.08993 * 109.47367 * 150.02276 * 1 2 3 28 28 H 1.08002 * 124.67977 * 180.02562 * 4 3 2 29 29 H 1.08002 * 120.00050 * 8.34693 * 7 6 2 30 30 H 1.08005 * 120.00043 * 210.68473 * 8 7 6 31 31 H 1.08997 * 109.58538 * 246.15654 * 12 11 9 32 32 H 1.08995 * 109.58430 * 6.44451 * 12 11 9 33 33 H 1.09001 * 109.49837 * 174.58723 * 13 12 11 34 34 H 1.09007 * 109.50132 * 294.64782 * 13 12 11 35 35 H 1.09002 * 109.45849 * 58.65559 * 14 13 12 36 36 H 1.09000 * 109.46202 * 178.62163 * 14 13 12 37 37 H 1.08999 * 109.46635 * 59.99647 * 16 15 14 38 38 H 1.08997 * 109.47270 * 179.97438 * 16 15 14 39 39 H 1.08995 * 109.46971 * 300.00075 * 16 15 14 40 40 H 1.09001 * 109.46709 * 59.99758 * 17 15 14 41 41 H 1.08993 * 109.47438 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.46808 * 300.00180 * 17 15 14 43 43 H 1.09004 * 109.58715 * 113.84516 * 18 11 9 44 44 H 0.97000 * 119.99111 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2217 1.0973 0.0000 4 6 3.5091 0.9714 0.0005 5 16 3.9534 -0.6790 0.0018 6 6 2.2550 -1.1486 0.0005 7 6 1.7532 -2.4741 0.0001 8 6 2.5995 -3.5192 0.1710 9 6 3.7667 -3.3636 0.9563 10 8 3.8363 -2.4618 1.7717 11 7 4.8013 -4.2135 0.8016 12 6 4.6956 -5.3640 -0.1061 13 6 5.8707 -5.3268 -1.0881 14 6 7.1836 -5.2630 -0.3044 15 6 7.2162 -3.9848 0.5365 16 6 8.5429 -3.9058 1.2945 17 6 7.0782 -2.7672 -0.3796 18 6 6.0582 -4.0036 1.5328 19 6 6.0030 -2.6877 2.2652 20 7 5.9767 -1.5904 1.6079 21 14 5.9730 -2.6589 4.1328 22 1 6.0107 -4.0503 4.6500 23 1 7.1535 -1.9113 4.6353 24 1 4.7302 -1.9920 4.5976 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 4.2071 1.7956 0.0010 29 1 0.6967 -2.6515 -0.1365 30 1 2.3829 -4.4707 -0.2920 31 1 4.7302 -6.2885 0.4702 32 1 3.7557 -5.3108 -0.6555 33 1 5.8583 -6.2256 -1.7046 34 1 5.7842 -4.4470 -1.7260 35 1 7.2577 -6.1309 0.3511 36 1 8.0224 -5.2611 -1.0004 37 1 9.3679 -3.8930 0.5823 38 1 8.5658 -2.9950 1.8929 39 1 8.6403 -4.7728 1.9478 40 1 6.1324 -2.8234 -0.9185 41 1 7.1018 -1.8571 0.2196 42 1 7.9024 -2.7538 -1.0927 43 1 6.2062 -4.8150 2.2455 44 1 5.9416 -0.7434 2.0794 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493512180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:22 Heat of formation + Delta-G solvation = 103.486015 kcal Electronic energy + Delta-G solvation = -27356.542669 eV Core-core repulsion = 23904.637087 eV Total energy + Delta-G solvation = -3451.905582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06523 -40.70535 -39.38144 -36.59961 -35.28544 -34.88456 -32.49293 -32.17466 -29.28224 -28.07280 -27.70172 -26.67110 -25.86286 -24.14647 -23.21300 -21.34364 -20.71496 -19.77649 -19.21172 -18.40631 -18.02700 -17.80703 -17.01527 -16.59783 -16.01649 -15.90088 -15.68661 -15.24301 -14.86355 -14.83743 -14.68218 -14.42554 -14.23685 -14.04381 -13.93851 -13.69410 -13.44118 -13.27817 -13.15481 -13.05683 -12.77456 -12.53618 -12.43649 -12.25664 -12.00950 -11.99737 -11.76396 -11.59907 -11.46481 -11.31848 -11.20296 -10.48878 -10.23395 -9.68351 -9.47877 -9.05575 -8.93815 -1.03892 0.54654 0.77518 0.94891 1.05069 1.14774 1.36970 1.64552 1.84100 1.94440 2.28853 2.39068 3.36640 3.42591 3.81321 3.90163 3.98149 3.99776 4.08163 4.10678 4.14541 4.24935 4.32936 4.45607 4.57448 4.59355 4.69805 4.70507 4.73794 4.85635 4.90449 4.91867 4.96465 5.05419 5.05953 5.18131 5.19965 5.22162 5.24393 5.26973 5.38767 5.40297 5.44506 5.54811 5.66166 5.96738 6.47851 6.82489 7.04315 7.21361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.079 3.921 3 N -0.518 5.518 4 C -0.052 4.052 5 S 0.321 5.679 6 C -0.278 4.278 7 C 0.036 3.964 8 C -0.261 4.261 9 C 0.542 3.458 10 O -0.551 6.551 11 N -0.591 5.591 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.109 4.109 15 C -0.061 4.061 16 C -0.143 4.143 17 C -0.148 4.148 18 C 0.181 3.819 19 C 0.024 3.976 20 N -0.606 5.606 21 Si 0.960 3.040 22 H -0.234 1.234 23 H -0.251 1.251 24 H -0.284 1.284 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.206 0.794 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -7.361 -2.436 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 N -0.234 5.234 4 C -0.342 4.342 5 S 0.582 5.418 6 C -0.400 4.400 7 C 0.015 3.985 8 C -0.285 4.285 9 C 0.335 3.665 10 O -0.433 6.433 11 N -0.323 5.323 12 C -0.021 4.021 13 C -0.172 4.172 14 C -0.146 4.146 15 C -0.062 4.062 16 C -0.201 4.201 17 C -0.205 4.205 18 C 0.077 3.923 19 C -0.223 4.223 20 N -0.225 5.225 21 Si 0.779 3.221 22 H -0.156 1.156 23 H -0.175 1.175 24 H -0.209 1.209 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.223 0.777 29 H 0.186 0.814 30 H 0.190 0.810 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.117 0.883 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.477 -6.586 -2.121 7.349 hybrid contribution -0.972 0.789 0.689 1.429 sum 1.505 -5.797 -1.432 6.158 Atomic orbital electron populations 1.20485 0.85681 1.04419 1.03446 1.21516 0.99115 0.86092 0.99362 1.65979 1.06205 1.33268 1.17979 1.29221 0.95528 1.05330 1.04145 1.85061 1.01724 0.97037 1.58000 1.24376 0.98589 0.99208 1.17848 1.20819 1.00004 0.87759 0.89945 1.22292 0.97312 1.03182 1.05684 1.17421 0.83590 0.81100 0.84358 1.90772 1.80715 1.33976 1.37832 1.48187 1.11761 1.28000 1.44345 1.22094 1.00496 0.87830 0.91684 1.21947 0.94193 1.03197 0.97905 1.21610 0.97840 0.96505 0.98681 1.20683 0.93535 0.96917 0.95100 1.21857 0.95719 1.02150 1.00327 1.22290 0.99780 0.99537 0.98925 1.20571 0.84338 0.94210 0.93182 1.29606 0.91661 0.95501 1.05517 1.67945 1.09860 1.02136 1.42540 0.85349 0.79341 0.82433 0.74951 1.15634 1.17524 1.20935 0.90208 0.90845 0.88196 0.77729 0.81383 0.81021 0.89409 0.87953 0.89087 0.92089 0.90629 0.91374 0.91956 0.93084 0.91245 0.93626 0.88886 0.94567 0.88334 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.07 71.23 0.72 0.54 16 2 C 0.08 0.68 6.85 42.41 0.29 0.97 16 3 N -0.52 -6.25 10.49 -189.44 -1.99 -8.24 16 4 C -0.05 -0.41 12.20 130.61 1.59 1.18 16 5 S 0.32 1.85 16.16 -56.49 -0.91 0.94 16 6 C -0.28 -1.75 5.58 22.86 0.13 -1.62 16 7 C 0.04 0.02 9.31 22.51 0.21 0.23 16 8 C -0.26 0.31 8.87 22.46 0.20 0.50 16 9 C 0.54 1.38 5.67 85.06 0.48 1.86 16 10 O -0.55 -4.44 8.78 -4.59 -0.04 -4.48 16 11 N -0.59 1.00 2.42 -810.58 -1.96 -0.96 16 12 C 0.10 -0.75 6.33 86.36 0.55 -0.20 16 13 C -0.13 0.95 5.74 30.67 0.18 1.13 16 14 C -0.11 0.65 4.71 30.62 0.14 0.79 16 15 C -0.06 0.19 0.55 -52.25 -0.03 0.16 16 16 C -0.14 0.55 8.30 71.98 0.60 1.14 16 17 C -0.15 -0.04 7.22 71.98 0.52 0.48 16 18 C 0.18 -0.26 2.22 44.09 0.10 -0.16 16 19 C 0.02 0.05 1.50 88.68 0.13 0.18 16 20 N -0.61 -1.78 5.42 24.11 0.13 -1.64 16 21 Si 0.96 3.20 28.58 68.60 1.96 5.16 16 22 H -0.23 -0.41 7.11 99.48 0.71 0.29 16 23 H -0.25 -0.82 7.11 99.48 0.71 -0.11 16 24 H -0.28 -2.87 7.11 99.48 0.71 -2.17 16 25 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 26 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.10 -0.35 7.04 -2.39 -0.02 -0.36 16 28 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 29 H 0.17 -0.93 7.08 -2.91 -0.02 -0.95 16 30 H 0.17 -1.36 6.09 -2.91 -0.02 -1.38 16 31 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.10 -1.04 5.41 -2.39 -0.01 -1.05 16 33 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.06 -0.24 6.34 -2.38 -0.02 -0.25 16 35 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.05 -0.12 7.41 -2.39 -0.02 -0.13 16 39 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.04 0.09 5.98 -2.39 -0.01 0.08 16 41 H 0.09 0.22 4.94 -2.65 -0.01 0.20 16 42 H 0.04 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.10 -0.41 7.54 -2.39 -0.02 -0.42 16 44 H 0.33 0.92 8.22 -92.71 -0.76 0.16 16 Total: 0.00 -14.78 335.66 4.01 -10.77 By element: Atomic # 1 Polarization: -9.75 SS G_CDS: 1.01 Total: -8.74 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.81 Total: 7.19 kcal Atomic # 7 Polarization: -7.03 SS G_CDS: -3.82 Total: -10.84 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.04 Total: -4.48 kcal Atomic # 14 Polarization: 3.20 SS G_CDS: 1.96 Total: 5.16 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -0.91 Total: 0.94 kcal Total: -14.78 4.01 -10.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493512180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.261 kcal (2) G-P(sol) polarization free energy of solvation -14.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds