Wall clock time and date at job start Tue Mar 31 2020 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29356 * 124.67939 * 2 1 4 4 C 1.30951 * 117.49641 * 180.02562 * 3 2 1 5 5 C 1.37079 * 113.84710 * 359.97438 * 4 3 2 6 6 C 1.41725 * 126.18946 * 180.26623 * 5 4 3 7 7 C 1.35554 * 119.99778 * 173.02990 * 6 5 4 8 8 C 1.41553 * 120.00463 * 40.37419 * 7 6 5 9 9 O 1.21774 * 119.99750 * 18.61851 * 8 7 6 10 10 N 1.34773 * 120.00130 * 198.61955 * 8 7 6 11 11 C 1.46921 * 120.63187 * 350.44552 * 10 8 7 12 12 C 1.53188 * 108.77692 * 126.36720 * 11 10 8 13 13 C 1.53039 * 109.31043 * 54.63602 * 12 11 10 14 14 C 1.53042 * 109.54057 * 298.63260 * 13 12 11 15 15 C 1.53001 * 109.49916 * 181.31760 * 14 13 12 16 16 C 1.52995 * 109.49514 * 301.38564 * 14 13 12 17 17 C 1.46929 * 120.62693 * 170.16690 * 10 8 7 18 18 C 1.50695 * 109.58843 * 353.41425 * 17 10 8 19 19 N 1.27942 * 119.99535 * 101.26227 * 18 17 10 20 20 Si 1.86799 * 120.00322 * 281.26364 * 18 17 10 21 21 H 1.48493 * 109.47139 * 24.78410 * 20 18 17 22 22 H 1.48495 * 109.47204 * 144.78856 * 20 18 17 23 23 H 1.48504 * 109.46718 * 264.78582 * 20 18 17 24 24 S 1.70916 * 124.67167 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47548 * 269.96461 * 1 2 3 26 26 H 1.09003 * 109.47023 * 29.96823 * 1 2 3 27 27 H 1.09003 * 109.47119 * 149.96006 * 1 2 3 28 28 H 1.07998 * 123.08105 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.00082 * 353.02544 * 6 5 4 30 30 H 1.08001 * 119.99645 * 220.37460 * 7 6 5 31 31 H 1.09000 * 109.59076 * 246.15802 * 11 10 8 32 32 H 1.09001 * 109.58697 * 6.43781 * 11 10 8 33 33 H 1.09005 * 109.49716 * 174.58222 * 12 11 10 34 34 H 1.08993 * 109.50009 * 294.65266 * 12 11 10 35 35 H 1.09004 * 109.46532 * 58.65746 * 13 12 11 36 36 H 1.09000 * 109.46081 * 178.62787 * 13 12 11 37 37 H 1.08995 * 109.47166 * 59.99987 * 15 14 13 38 38 H 1.08996 * 109.46655 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47129 * 299.99771 * 15 14 13 40 40 H 1.09005 * 109.47434 * 72.81891 * 16 14 13 41 41 H 1.08999 * 109.47089 * 192.81792 * 16 14 13 42 42 H 1.09003 * 109.47388 * 312.81748 * 16 14 13 43 43 H 1.08998 * 109.58739 * 113.84459 * 17 10 8 44 44 H 0.96999 * 120.00560 * 5.01022 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9000 -0.0005 5 6 3.9353 -0.4132 -0.0004 6 6 5.2711 -0.8869 0.0044 7 6 5.5198 -2.2118 0.1464 8 6 4.7033 -3.1602 -0.5152 9 8 4.0123 -2.8168 -1.4573 10 7 4.6905 -4.4431 -0.1023 11 6 5.6646 -4.9202 0.8887 12 6 4.9080 -5.5821 2.0446 13 6 3.9901 -6.6736 1.4895 14 6 2.9673 -6.0475 0.5386 15 6 2.0295 -7.1345 0.0097 16 6 2.1533 -4.9909 1.2880 17 6 3.6984 -5.3895 -0.6303 18 6 2.7068 -4.6529 -1.4935 19 7 2.8097 -4.6992 -2.7679 20 14 1.3276 -3.6721 -0.7028 21 1 1.7300 -3.2690 0.6686 22 1 1.0538 -2.4595 -1.5150 23 1 0.1024 -4.5084 -0.6334 24 16 2.4793 -1.4057 -0.0006 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8896 -0.5145 28 1 4.2402 1.7241 -0.0010 29 1 6.0908 -0.1923 -0.1051 30 1 6.3410 -2.5439 0.7642 31 1 6.3317 -5.6469 0.4249 32 1 6.2460 -4.0783 1.2643 33 1 5.6212 -6.0253 2.7397 34 1 4.3106 -4.8333 2.5645 35 1 4.5859 -7.4091 0.9490 36 1 3.4686 -7.1627 2.3123 37 1 1.5092 -7.6034 0.8448 38 1 1.3017 -6.6882 -0.6678 39 1 2.6098 -7.8864 -0.5251 40 1 2.7736 -4.1122 1.4647 41 1 1.2861 -4.7093 0.6907 42 1 1.8201 -5.3984 2.2425 43 1 4.2018 -6.1553 -1.2205 44 1 3.4803 -5.2660 -3.1801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493726778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:31 Heat of formation + Delta-G solvation = 127.684576 kcal Electronic energy + Delta-G solvation = -27549.498588 eV Core-core repulsion = 24098.642334 eV Total energy + Delta-G solvation = -3450.856254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31431 -40.45210 -39.63963 -36.55211 -35.63580 -35.19451 -32.86653 -32.38456 -29.49046 -29.19067 -27.93529 -26.94931 -25.03276 -24.08736 -23.47280 -21.77539 -21.03764 -20.15758 -19.68526 -18.52439 -18.41127 -17.84430 -17.02077 -16.87474 -16.40128 -16.11504 -16.00679 -15.59733 -15.14624 -15.00669 -14.87218 -14.67089 -14.43763 -14.36748 -14.06069 -13.96759 -13.76048 -13.53374 -13.31293 -13.16803 -13.10991 -12.87629 -12.59316 -12.35791 -12.29283 -12.06277 -11.93653 -11.76257 -11.30488 -11.05032 -10.73807 -10.35863 -9.97942 -9.79323 -9.64857 -9.23070 -8.83443 -1.13437 0.45447 0.66329 0.92817 1.01481 1.23050 1.32066 1.70664 1.94264 1.99302 2.21097 2.27725 3.27669 3.31721 3.47104 3.47910 3.72406 3.76822 3.82219 3.97952 4.01881 4.09999 4.15635 4.19213 4.24252 4.29839 4.36954 4.45334 4.49753 4.52613 4.53820 4.55038 4.62637 4.65685 4.78025 4.83031 4.87434 4.94105 5.02080 5.03036 5.08313 5.14897 5.15761 5.17845 5.34964 5.42834 6.28218 6.90386 7.08406 7.20272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.026 3.974 3 N -0.485 5.485 4 C 0.094 3.906 5 C -0.276 4.276 6 C 0.069 3.931 7 C -0.288 4.288 8 C 0.545 3.455 9 O -0.510 6.510 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.140 4.140 13 C -0.108 4.108 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.131 3.869 18 C 0.007 3.993 19 N -0.620 5.620 20 Si 0.983 3.017 21 H -0.170 1.170 22 H -0.231 1.231 23 H -0.238 1.238 24 S 0.205 5.795 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.177 0.823 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -3.999 6.175 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.245 4.245 3 N -0.200 5.200 4 C -0.064 4.064 5 C -0.396 4.396 6 C 0.047 3.953 7 C -0.311 4.311 8 C 0.339 3.661 9 O -0.389 6.389 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.178 4.178 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.205 4.205 16 C -0.220 4.220 17 C 0.025 3.975 18 C -0.238 4.238 19 N -0.235 5.235 20 Si 0.814 3.186 21 H -0.101 1.101 22 H -0.160 1.160 23 H -0.166 1.166 24 S 0.461 5.539 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.194 0.806 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.474 -3.496 5.202 6.286 hybrid contribution 2.456 -0.460 -0.066 2.500 sum 1.982 -3.956 5.136 6.779 Atomic orbital electron populations 1.20621 0.85626 1.04625 1.04017 1.27643 1.02364 0.93222 1.01305 1.66031 1.05169 1.31815 1.16947 1.22591 0.91201 0.94918 0.97715 1.24772 1.00126 0.97979 1.16702 1.20597 0.93151 0.95609 0.85917 1.21932 1.07820 0.93368 1.08010 1.17333 0.81838 0.82229 0.84664 1.90839 1.41978 1.78299 1.27744 1.48172 1.32976 1.09510 1.43035 1.21887 0.90755 1.00035 0.89085 1.21992 0.99414 0.98868 0.97527 1.21602 0.96679 0.97484 0.98760 1.20807 0.95875 0.95827 0.94939 1.21901 0.99106 0.97750 1.01763 1.22909 0.98196 0.99772 1.01153 1.21569 0.89256 0.91411 0.95263 1.31075 1.02019 0.96018 0.94727 1.69143 1.26508 1.16279 1.11556 0.84168 0.75067 0.80355 0.78969 1.10066 1.15960 1.16560 1.86020 0.96569 1.08051 1.63259 0.89135 0.88952 0.90240 0.80579 0.83649 0.83548 0.91051 0.88936 0.90132 0.90719 0.91323 0.90701 0.91204 0.92099 0.91913 0.90251 0.94320 0.90164 0.90360 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.04 10.46 36.01 0.38 0.34 16 2 C 0.03 0.09 7.37 -13.32 -0.10 -0.01 16 3 N -0.48 -2.30 10.50 -11.18 -0.12 -2.42 16 4 C 0.09 0.28 11.38 -18.35 -0.21 0.07 16 5 C -0.28 -0.73 5.86 -38.67 -0.23 -0.96 16 6 C 0.07 0.03 9.59 -39.21 -0.38 -0.35 16 7 C -0.29 -0.01 8.95 -39.28 -0.35 -0.36 16 8 C 0.55 1.08 5.41 -15.00 -0.08 0.99 16 9 O -0.51 -2.59 9.40 5.12 0.05 -2.54 16 10 N -0.60 0.08 2.23 -170.20 -0.38 -0.30 16 11 C 0.10 -0.31 6.34 -3.72 -0.02 -0.34 16 12 C -0.14 0.53 5.76 -26.61 -0.15 0.37 16 13 C -0.11 0.35 4.68 -26.69 -0.12 0.23 16 14 C -0.07 0.13 0.51 -154.61 -0.08 0.05 16 15 C -0.15 0.28 8.22 37.16 0.31 0.58 16 16 C -0.16 0.26 5.30 37.15 0.20 0.46 16 17 C 0.13 0.02 2.39 -68.97 -0.16 -0.14 16 18 C 0.01 0.02 2.13 -13.90 -0.03 -0.01 16 19 N -0.62 -2.84 12.84 56.23 0.72 -2.12 16 20 Si 0.98 2.12 16.39 -169.99 -2.79 -0.67 16 21 H -0.17 -0.02 2.79 77.87 0.22 0.20 16 22 H -0.23 -0.92 6.03 59.93 0.36 -0.56 16 23 H -0.24 -0.30 7.08 56.52 0.40 0.10 16 24 S 0.20 0.62 10.31 -107.50 -1.11 -0.49 16 25 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 26 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.08 -0.06 7.73 -51.93 -0.40 -0.46 16 28 H 0.18 -0.01 8.06 -52.49 -0.42 -0.43 16 29 H 0.15 -0.36 8.06 -52.49 -0.42 -0.78 16 30 H 0.15 -0.42 5.92 -52.49 -0.31 -0.73 16 31 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 32 H 0.09 -0.39 5.36 -51.93 -0.28 -0.67 16 33 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 34 H 0.07 -0.25 6.64 -51.93 -0.34 -0.60 16 35 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 37 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 38 H 0.06 -0.05 6.57 -51.93 -0.34 -0.39 16 39 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 40 H 0.08 -0.10 5.01 -51.93 -0.26 -0.36 16 41 H 0.04 -0.03 2.30 -51.93 -0.12 -0.15 16 42 H 0.08 -0.25 8.08 -51.93 -0.42 -0.67 16 43 H 0.08 0.00 7.95 -51.93 -0.41 -0.41 16 44 H 0.32 1.09 8.60 -40.82 -0.35 0.74 16 LS Contribution 317.34 15.07 4.78 4.78 Total: 0.00 -6.59 317.34 -6.37 -12.95 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -6.49 Total: -10.13 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.04 Total: 0.93 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: 0.22 Total: -4.83 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.05 Total: -2.54 kcal Atomic # 14 Polarization: 2.12 SS G_CDS: -2.79 Total: -0.67 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -1.11 Total: -0.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -6.59 -6.37 -12.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493726778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.638 kcal (2) G-P(sol) polarization free energy of solvation -6.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds