Wall clock time and date at job start Tue Mar 31 2020 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29356 * 124.67939 * 2 1 4 4 C 1.30951 * 117.49641 * 180.02562 * 3 2 1 5 5 C 1.37079 * 113.84710 * 359.97438 * 4 3 2 6 6 C 1.41725 * 126.18946 * 180.26623 * 5 4 3 7 7 C 1.35554 * 119.99778 * 173.02990 * 6 5 4 8 8 C 1.41553 * 120.00463 * 40.37419 * 7 6 5 9 9 O 1.21774 * 119.99750 * 18.61851 * 8 7 6 10 10 N 1.34773 * 120.00130 * 198.61955 * 8 7 6 11 11 C 1.46921 * 120.63187 * 350.44552 * 10 8 7 12 12 C 1.53188 * 108.77692 * 126.36720 * 11 10 8 13 13 C 1.53039 * 109.31043 * 54.63602 * 12 11 10 14 14 C 1.53042 * 109.54057 * 298.63260 * 13 12 11 15 15 C 1.53001 * 109.49916 * 181.31760 * 14 13 12 16 16 C 1.52995 * 109.49514 * 301.38564 * 14 13 12 17 17 C 1.46929 * 120.62693 * 170.16690 * 10 8 7 18 18 C 1.50695 * 109.58843 * 353.41425 * 17 10 8 19 19 N 1.27942 * 119.99535 * 101.26227 * 18 17 10 20 20 Si 1.86799 * 120.00322 * 281.26364 * 18 17 10 21 21 H 1.48493 * 109.47139 * 24.78410 * 20 18 17 22 22 H 1.48495 * 109.47204 * 144.78856 * 20 18 17 23 23 H 1.48504 * 109.46718 * 264.78582 * 20 18 17 24 24 S 1.70916 * 124.67167 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47548 * 269.96461 * 1 2 3 26 26 H 1.09003 * 109.47023 * 29.96823 * 1 2 3 27 27 H 1.09003 * 109.47119 * 149.96006 * 1 2 3 28 28 H 1.07998 * 123.08105 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.00082 * 353.02544 * 6 5 4 30 30 H 1.08001 * 119.99645 * 220.37460 * 7 6 5 31 31 H 1.09000 * 109.59076 * 246.15802 * 11 10 8 32 32 H 1.09001 * 109.58697 * 6.43781 * 11 10 8 33 33 H 1.09005 * 109.49716 * 174.58222 * 12 11 10 34 34 H 1.08993 * 109.50009 * 294.65266 * 12 11 10 35 35 H 1.09004 * 109.46532 * 58.65746 * 13 12 11 36 36 H 1.09000 * 109.46081 * 178.62787 * 13 12 11 37 37 H 1.08995 * 109.47166 * 59.99987 * 15 14 13 38 38 H 1.08996 * 109.46655 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47129 * 299.99771 * 15 14 13 40 40 H 1.09005 * 109.47434 * 72.81891 * 16 14 13 41 41 H 1.08999 * 109.47089 * 192.81792 * 16 14 13 42 42 H 1.09003 * 109.47388 * 312.81748 * 16 14 13 43 43 H 1.08998 * 109.58739 * 113.84459 * 17 10 8 44 44 H 0.96999 * 120.00560 * 5.01022 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5422 0.9000 -0.0005 5 6 3.9353 -0.4132 -0.0004 6 6 5.2711 -0.8869 0.0044 7 6 5.5198 -2.2118 0.1464 8 6 4.7033 -3.1602 -0.5152 9 8 4.0123 -2.8168 -1.4573 10 7 4.6905 -4.4431 -0.1023 11 6 5.6646 -4.9202 0.8887 12 6 4.9080 -5.5821 2.0446 13 6 3.9901 -6.6736 1.4895 14 6 2.9673 -6.0475 0.5386 15 6 2.0295 -7.1345 0.0097 16 6 2.1533 -4.9909 1.2880 17 6 3.6984 -5.3895 -0.6303 18 6 2.7068 -4.6529 -1.4935 19 7 2.8097 -4.6992 -2.7679 20 14 1.3276 -3.6721 -0.7028 21 1 1.7300 -3.2690 0.6686 22 1 1.0538 -2.4595 -1.5150 23 1 0.1024 -4.5084 -0.6334 24 16 2.4793 -1.4057 -0.0006 25 1 -0.3634 -0.0006 1.0276 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8896 -0.5145 28 1 4.2402 1.7241 -0.0010 29 1 6.0908 -0.1923 -0.1051 30 1 6.3410 -2.5439 0.7642 31 1 6.3317 -5.6469 0.4249 32 1 6.2460 -4.0783 1.2643 33 1 5.6212 -6.0253 2.7397 34 1 4.3106 -4.8333 2.5645 35 1 4.5859 -7.4091 0.9490 36 1 3.4686 -7.1627 2.3123 37 1 1.5092 -7.6034 0.8448 38 1 1.3017 -6.6882 -0.6678 39 1 2.6098 -7.8864 -0.5251 40 1 2.7736 -4.1122 1.4647 41 1 1.2861 -4.7093 0.6907 42 1 1.8201 -5.3984 2.2425 43 1 4.2018 -6.1553 -1.2205 44 1 3.4803 -5.2660 -3.1801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493726778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:31 Heat of formation + Delta-G solvation = 129.647175 kcal Electronic energy + Delta-G solvation = -27549.413483 eV Core-core repulsion = 24098.642334 eV Total energy + Delta-G solvation = -3450.771149 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.138 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.30469 -40.60098 -39.65217 -36.62037 -35.59014 -35.29600 -32.74705 -32.44145 -29.53671 -29.07924 -27.87942 -26.85446 -25.13384 -24.07761 -23.42664 -21.81927 -21.13057 -20.09922 -19.67310 -18.60140 -18.46329 -17.90877 -17.03370 -16.89735 -16.42778 -16.15055 -16.03945 -15.55852 -15.18710 -15.01492 -14.89298 -14.58330 -14.36849 -14.23489 -14.10777 -14.01100 -13.70426 -13.55713 -13.28246 -13.21875 -12.99128 -12.88535 -12.53060 -12.31436 -12.14334 -12.02614 -11.81147 -11.61509 -11.34686 -11.13746 -10.82710 -10.51585 -10.06706 -9.94413 -9.69622 -9.39078 -8.88812 -1.21688 0.29931 0.55650 0.77080 0.86006 1.05728 1.15998 1.58439 1.80549 1.85929 2.17130 2.19471 3.24099 3.34969 3.58072 3.66293 3.79727 3.92805 3.99212 4.02852 4.06562 4.13653 4.21649 4.26250 4.34538 4.41389 4.49490 4.50367 4.55833 4.57405 4.70320 4.77827 4.83548 4.86182 4.92427 4.95367 4.97865 5.03689 5.10392 5.13140 5.16779 5.26357 5.27478 5.31078 5.44473 5.47951 6.30148 6.73352 7.00955 7.03546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.008 3.992 3 N -0.513 5.513 4 C 0.075 3.925 5 C -0.279 4.279 6 C 0.056 3.944 7 C -0.280 4.280 8 C 0.534 3.466 9 O -0.548 6.548 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.136 4.136 13 C -0.105 4.105 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.170 4.170 17 C 0.129 3.871 18 C 0.012 3.988 19 N -0.658 5.658 20 Si 0.974 3.026 21 H -0.134 1.134 22 H -0.265 1.265 23 H -0.233 1.233 24 S 0.194 5.806 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.199 0.801 29 H 0.176 0.824 30 H 0.179 0.821 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -4.966 8.302 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.263 4.263 3 N -0.228 5.228 4 C -0.082 4.082 5 C -0.399 4.399 6 C 0.035 3.965 7 C -0.303 4.303 8 C 0.329 3.671 9 O -0.430 6.430 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.174 4.174 13 C -0.142 4.142 14 C -0.070 4.070 15 C -0.207 4.207 16 C -0.225 4.225 17 C 0.024 3.976 18 C -0.232 4.232 19 N -0.274 5.274 20 Si 0.806 3.194 21 H -0.064 1.064 22 H -0.196 1.196 23 H -0.160 1.160 24 S 0.450 5.550 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.216 0.784 29 H 0.193 0.807 30 H 0.196 0.804 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.920 -4.494 7.371 8.682 hybrid contribution 2.056 -0.219 -0.767 2.205 sum 2.976 -4.714 6.604 8.642 Atomic orbital electron populations 1.20761 0.84166 1.04887 1.05403 1.28074 1.03565 0.93172 1.01529 1.66054 1.06185 1.32630 1.17949 1.22977 0.91113 0.95891 0.98228 1.25074 1.00927 0.97791 1.16077 1.20957 0.92861 0.96542 0.86156 1.22213 1.08040 0.92788 1.07234 1.17757 0.81700 0.83164 0.84519 1.90834 1.43624 1.78981 1.29548 1.48278 1.33009 1.08835 1.42951 1.22163 0.90428 1.00951 0.88773 1.21989 0.99551 0.98604 0.97255 1.21605 0.96368 0.97647 0.98623 1.20799 0.96153 0.95657 0.94434 1.21929 0.98929 0.97783 1.02044 1.22915 0.97773 0.99839 1.02016 1.21551 0.89082 0.91159 0.95855 1.31273 1.02337 0.95040 0.94590 1.69180 1.27623 1.17739 1.12895 0.84539 0.75409 0.79185 0.80289 1.06437 1.19588 1.15992 1.85911 0.97280 1.08423 1.63360 0.87109 0.89078 0.89555 0.78395 0.80681 0.80376 0.90308 0.87337 0.88357 0.90792 0.91077 0.89517 0.89789 0.93661 0.91634 0.90565 0.95383 0.88054 0.90480 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.21 10.46 71.24 0.74 0.54 16 2 C 0.01 0.07 7.37 88.47 0.65 0.72 16 3 N -0.51 -5.63 10.50 -189.29 -1.99 -7.62 16 4 C 0.08 0.51 11.38 84.55 0.96 1.47 16 5 C -0.28 -1.63 5.86 22.86 0.13 -1.50 16 6 C 0.06 0.00 9.59 22.51 0.22 0.22 16 7 C -0.28 0.33 8.95 22.47 0.20 0.53 16 8 C 0.53 2.07 5.41 85.06 0.46 2.53 16 9 O -0.55 -6.33 9.40 -4.58 -0.04 -6.37 16 10 N -0.60 0.54 2.23 -810.58 -1.81 -1.27 16 11 C 0.10 -0.78 6.34 86.36 0.55 -0.24 16 12 C -0.14 1.37 5.76 30.67 0.18 1.55 16 13 C -0.10 0.90 4.68 30.62 0.14 1.04 16 14 C -0.07 0.29 0.51 -52.25 -0.03 0.26 16 15 C -0.15 0.60 8.22 71.98 0.59 1.19 16 16 C -0.17 0.68 5.30 71.98 0.38 1.06 16 17 C 0.13 0.08 2.39 44.08 0.11 0.18 16 18 C 0.01 0.08 2.13 88.67 0.19 0.27 16 19 N -0.66 -7.70 12.84 24.11 0.31 -7.39 16 20 Si 0.97 5.83 16.39 68.60 1.12 6.95 16 21 H -0.13 -0.11 2.79 85.90 0.24 0.13 16 22 H -0.27 -3.03 6.03 97.31 0.59 -2.45 16 23 H -0.23 -0.97 7.08 99.48 0.70 -0.27 16 24 S 0.19 1.43 10.31 -56.49 -0.58 0.84 16 25 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.09 0.03 7.73 -2.39 -0.02 0.01 16 28 H 0.20 0.05 8.06 -2.91 -0.02 0.03 16 29 H 0.18 -1.15 8.06 -2.91 -0.02 -1.18 16 30 H 0.18 -1.52 5.92 -2.91 -0.02 -1.54 16 31 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.11 -1.23 5.36 -2.39 -0.01 -1.24 16 33 H 0.10 -1.26 8.14 -2.38 -0.02 -1.28 16 34 H 0.07 -0.69 6.64 -2.39 -0.02 -0.70 16 35 H 0.07 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.04 -0.03 6.57 -2.39 -0.02 -0.04 16 39 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.08 -0.25 5.01 -2.38 -0.01 -0.26 16 41 H 0.03 -0.04 2.30 -2.39 -0.01 -0.05 16 42 H 0.10 -0.82 8.08 -2.39 -0.02 -0.84 16 43 H 0.08 0.05 7.95 -2.39 -0.02 0.03 16 44 H 0.32 3.02 8.60 -92.71 -0.80 2.23 16 Total: 0.00 -18.61 317.34 2.89 -15.73 By element: Atomic # 1 Polarization: -11.10 SS G_CDS: 0.40 Total: -10.71 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.48 Total: 9.83 kcal Atomic # 7 Polarization: -12.79 SS G_CDS: -3.49 Total: -16.28 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.04 Total: -6.37 kcal Atomic # 14 Polarization: 5.83 SS G_CDS: 1.12 Total: 6.95 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -0.58 Total: 0.84 kcal Total: -18.61 2.89 -15.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493726778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.375 kcal (2) G-P(sol) polarization free energy of solvation -18.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds