Wall clock time and date at job start Tue Mar 31 2020 13:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35948 * 117.00244 * 2 1 4 4 C 1.39238 * 120.06601 * 0.02562 * 3 2 1 5 5 C 1.36047 * 120.73304 * 180.02562 * 4 3 2 6 6 C 1.41169 * 120.62515 * 359.97438 * 5 4 3 7 7 N 1.34754 * 128.81905 * 180.30830 * 6 5 4 8 8 C 1.28016 * 118.11142 * 180.21628 * 7 6 5 9 9 C 1.50706 * 124.78195 * 179.76985 * 8 7 6 10 10 N 1.46896 * 109.47017 * 89.29995 * 9 8 7 11 11 C 1.46906 * 111.00095 * 287.54884 * 10 9 8 12 12 C 1.50698 * 109.46866 * 170.00071 * 11 10 9 13 13 H 1.07996 * 120.00478 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99715 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00235 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00208 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47137 * 89.99463 * 16 14 12 18 18 H 1.48499 * 109.47391 * 210.00326 * 16 14 12 19 19 H 1.48505 * 109.46749 * 329.99778 * 16 14 12 20 20 C 1.46903 * 110.99991 * 163.59858 * 10 9 8 21 21 C 1.52999 * 109.46917 * 294.93421 * 20 10 9 22 22 C 1.52998 * 109.47150 * 54.93702 * 20 10 9 23 23 S 1.75826 * 110.43853 * 359.50410 * 8 7 6 24 24 C 1.39848 * 118.40776 * 0.02562 * 6 5 4 25 25 C 1.38077 * 120.06867 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47243 * 299.99978 * 1 2 3 27 27 H 1.09004 * 109.47100 * 60.00111 * 1 2 3 28 28 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.63308 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.68750 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.46756 * 329.29976 * 9 8 7 32 32 H 1.09001 * 109.47344 * 209.30248 * 9 8 7 33 33 H 1.08998 * 109.47061 * 290.00093 * 11 10 9 34 34 H 1.09003 * 109.46971 * 50.00469 * 11 10 9 35 35 H 0.96998 * 120.00459 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.46984 * 174.93958 * 20 10 9 37 37 H 1.09002 * 109.47129 * 66.55852 * 21 20 10 38 38 H 1.08998 * 109.47414 * 186.55306 * 21 20 10 39 39 H 1.09004 * 109.47550 * 306.56004 * 21 20 10 40 40 H 1.08994 * 109.47352 * 60.00222 * 22 20 10 41 41 H 1.09000 * 109.46752 * 180.02562 * 22 20 10 42 42 H 1.09003 * 109.46764 * 300.00014 * 22 20 10 43 43 H 1.08001 * 120.00188 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2893 2.3799 0.0005 5 6 1.8928 3.5992 0.0000 6 6 3.3006 3.7048 -0.0005 7 7 4.0644 4.8149 0.0046 8 6 5.3365 4.6719 -0.0014 9 6 6.3292 5.8058 -0.0020 10 7 6.6449 6.1808 1.3827 11 6 5.5168 6.8838 2.0081 12 6 5.7752 7.0343 3.4851 13 1 6.6865 6.6469 3.9161 14 6 4.8482 7.6666 4.2863 15 7 5.0734 7.7975 5.5753 16 14 3.2715 8.3361 3.5410 17 1 2.2213 7.2869 3.5796 18 1 2.8195 9.5180 4.3182 19 1 3.5205 8.7356 2.1326 20 6 7.8686 6.9914 1.4426 21 6 9.0620 6.1473 0.9907 22 6 7.7230 8.2037 0.5207 23 16 5.7625 2.9660 -0.0012 24 6 4.0560 2.5279 -0.0011 25 6 3.4250 1.2851 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2110 2.3178 0.0005 30 1 1.2893 4.4948 0.0000 31 1 5.9013 6.6629 -0.5220 32 1 7.2406 5.4906 -0.5099 33 1 5.4074 7.8696 1.5561 34 1 4.6021 6.3107 1.8559 35 1 4.4215 8.2426 6.1389 36 1 8.0302 7.3304 2.4659 37 1 8.9565 5.9058 -0.0670 38 1 9.9834 6.7089 1.1448 39 1 9.0965 5.2259 1.5721 40 1 6.8729 8.8050 0.8427 41 1 8.6312 8.8049 0.5649 42 1 7.5615 7.8646 -0.5026 43 1 4.0143 0.3801 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530553329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:07 Heat of formation + Delta-G solvation = 29.997273 kcal Electronic energy + Delta-G solvation = -24522.984773 eV Core-core repulsion = 21081.548220 eV Total energy + Delta-G solvation = -3441.436554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56329 -39.10182 -37.94497 -35.72635 -32.68798 -31.52617 -31.35819 -29.75555 -28.29009 -27.26725 -26.69490 -25.41933 -23.56974 -22.52545 -21.75455 -20.57993 -18.97967 -18.56120 -17.55238 -16.69173 -16.46301 -15.99057 -15.89574 -15.36950 -14.93178 -14.45425 -14.10197 -14.03501 -13.90522 -13.37175 -13.21866 -13.13097 -12.89213 -12.57743 -12.42763 -12.37904 -12.19307 -11.79023 -11.65063 -11.49809 -11.10010 -10.76012 -10.70900 -10.70115 -10.55817 -10.38139 -10.07918 -9.97598 -9.85220 -9.43508 -9.14650 -8.52266 -8.24376 -7.85365 -7.45203 -6.01857 -3.98190 0.58365 1.07362 1.40335 1.91095 2.46368 3.07922 3.32842 3.39165 3.44438 3.67594 4.04010 4.46535 4.55302 4.74185 4.79980 4.86238 4.89372 5.02131 5.19421 5.21503 5.31567 5.37176 5.44421 5.54851 5.66008 5.70842 5.79845 5.88342 5.94505 5.96457 6.11466 6.14374 6.18922 6.20195 6.39890 6.45125 6.63215 6.76881 7.03538 7.07149 7.13022 7.64109 7.81662 7.89953 8.01406 8.66356 9.06053 9.60646 11.11100 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004355 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.194943 B = 6428.573433 C = 7977.304816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.136 3.864 4 C -0.190 4.190 5 C -0.023 4.023 6 C 0.054 3.946 7 N -0.457 5.457 8 C 0.156 3.844 9 C 0.115 3.885 10 N -0.514 5.514 11 C 0.156 3.844 12 C -0.506 4.506 13 H 0.081 0.919 14 C 0.071 3.929 15 N -0.901 5.901 16 Si 0.870 3.130 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.082 3.918 21 C -0.144 4.144 22 C -0.184 4.184 23 S 0.062 5.938 24 C -0.137 4.137 25 C -0.112 4.112 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.064 0.936 32 H 0.093 0.907 33 H -0.005 1.005 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -11.571 -15.193 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.088 3.912 4 C -0.211 4.211 5 C -0.044 4.044 6 C -0.065 4.065 7 N -0.169 5.169 8 C -0.131 4.131 9 C -0.016 4.016 10 N -0.239 5.239 11 C 0.030 3.970 12 C -0.544 4.544 13 H 0.099 0.901 14 C -0.131 4.131 15 N -0.540 5.540 16 Si 0.697 3.303 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.026 4.026 21 C -0.202 4.202 22 C -0.243 4.243 23 S 0.318 5.682 24 C -0.256 4.256 25 C -0.136 4.136 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.013 0.987 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.908 -12.090 -14.749 19.291 hybrid contribution -2.346 1.226 -0.552 2.704 sum -5.255 -10.863 -15.301 19.487 Atomic orbital electron populations 1.23088 0.78182 1.04019 1.01575 1.86067 1.21499 1.26434 1.88742 1.18633 0.91586 0.84253 0.96767 1.20755 1.00387 0.91631 1.08318 1.20254 0.90944 0.97883 0.95287 1.19147 0.94941 0.86009 1.06411 1.66149 1.04481 1.30384 1.15905 1.27538 0.92573 0.95723 0.97249 1.20802 0.94467 0.92225 0.94151 1.62189 1.05472 1.44715 1.11512 1.20327 0.89317 0.91832 0.95572 1.21003 1.06847 1.36564 0.90015 0.90127 1.24837 0.97800 0.95766 0.94652 1.69888 1.36000 1.43905 1.04230 0.86930 0.84662 0.78887 0.79791 1.20274 1.21349 1.19034 1.21661 0.89076 0.90682 1.01171 1.21913 0.97271 1.00729 1.00296 1.22472 1.02301 1.00029 0.99456 1.84878 1.02208 1.05591 1.75534 1.23385 0.97249 0.97594 1.07385 1.19263 0.91339 0.95631 1.07384 0.92388 0.92533 0.88152 0.84491 0.84529 0.91799 0.88867 0.98734 0.94664 0.92763 0.87802 0.93635 0.92717 0.91823 0.91878 0.92682 0.93483 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.51 10.50 -19.58 -0.21 -3.72 16 3 C 0.14 1.75 6.68 -39.27 -0.26 1.49 16 4 C -0.19 -2.30 8.95 -40.00 -0.36 -2.66 16 5 C -0.02 -0.34 10.04 -39.26 -0.39 -0.73 16 6 C 0.05 0.95 6.95 -84.87 -0.59 0.36 16 7 N -0.46 -8.85 9.62 -7.78 -0.07 -8.92 16 8 C 0.16 2.80 6.46 -13.87 -0.09 2.71 16 9 C 0.12 1.96 4.33 -4.98 -0.02 1.94 16 10 N -0.51 -10.40 4.40 -229.52 -1.01 -11.41 16 11 C 0.16 3.80 3.51 -4.97 -0.02 3.78 16 12 C -0.51 -14.39 8.94 -34.44 -0.31 -14.70 16 13 H 0.08 2.47 7.41 -52.49 -0.39 2.08 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 16 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 20 C 0.08 1.47 2.79 -67.71 -0.19 1.28 16 21 C -0.14 -2.05 8.98 37.16 0.33 -1.72 16 22 C -0.18 -2.92 8.51 37.16 0.32 -2.60 16 23 S 0.06 0.97 23.37 -107.50 -2.51 -1.54 16 24 C -0.14 -2.21 6.53 -38.55 -0.25 -2.46 16 25 C -0.11 -1.57 10.01 -39.22 -0.39 -1.97 16 26 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.14 1.21 6.28 -52.48 -0.33 0.88 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.06 1.08 7.16 -51.93 -0.37 0.71 16 32 H 0.09 1.31 5.99 -51.93 -0.31 0.99 16 33 H 0.00 -0.12 5.41 -51.93 -0.28 -0.40 16 34 H 0.04 0.92 6.00 -51.93 -0.31 0.61 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 36 H 0.10 2.16 6.66 -51.93 -0.35 1.81 16 37 H 0.04 0.56 6.53 -51.93 -0.34 0.23 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.14 6.54 -51.93 -0.34 0.80 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.66 6.71 -51.93 -0.35 0.31 16 43 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -33.04 355.01 -9.54 -42.58 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.87 Total: -0.72 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.33 Total: -12.12 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.31 Total: -47.43 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.21 Total: -3.72 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.04 -9.54 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530553329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.582 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds