Wall clock time and date at job start Tue Mar 31 2020 13:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35948 * 117.00244 * 2 1 4 4 C 1.39238 * 120.06601 * 0.02562 * 3 2 1 5 5 C 1.36047 * 120.73304 * 180.02562 * 4 3 2 6 6 C 1.41169 * 120.62515 * 359.97438 * 5 4 3 7 7 N 1.34754 * 128.81905 * 180.30830 * 6 5 4 8 8 C 1.28016 * 118.11142 * 180.21628 * 7 6 5 9 9 C 1.50706 * 124.78195 * 179.76985 * 8 7 6 10 10 N 1.46896 * 109.47017 * 89.29995 * 9 8 7 11 11 C 1.46906 * 111.00095 * 287.54884 * 10 9 8 12 12 C 1.50698 * 109.46866 * 170.00071 * 11 10 9 13 13 H 1.07996 * 120.00478 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99715 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00235 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00208 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47137 * 89.99463 * 16 14 12 18 18 H 1.48499 * 109.47391 * 210.00326 * 16 14 12 19 19 H 1.48505 * 109.46749 * 329.99778 * 16 14 12 20 20 C 1.46903 * 110.99991 * 163.59858 * 10 9 8 21 21 C 1.52999 * 109.46917 * 294.93421 * 20 10 9 22 22 C 1.52998 * 109.47150 * 54.93702 * 20 10 9 23 23 S 1.75826 * 110.43853 * 359.50410 * 8 7 6 24 24 C 1.39848 * 118.40776 * 0.02562 * 6 5 4 25 25 C 1.38077 * 120.06867 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47243 * 299.99978 * 1 2 3 27 27 H 1.09004 * 109.47100 * 60.00111 * 1 2 3 28 28 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.63308 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.68750 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.46756 * 329.29976 * 9 8 7 32 32 H 1.09001 * 109.47344 * 209.30248 * 9 8 7 33 33 H 1.08998 * 109.47061 * 290.00093 * 11 10 9 34 34 H 1.09003 * 109.46971 * 50.00469 * 11 10 9 35 35 H 0.96998 * 120.00459 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.46984 * 174.93958 * 20 10 9 37 37 H 1.09002 * 109.47129 * 66.55852 * 21 20 10 38 38 H 1.08998 * 109.47414 * 186.55306 * 21 20 10 39 39 H 1.09004 * 109.47550 * 306.56004 * 21 20 10 40 40 H 1.08994 * 109.47352 * 60.00222 * 22 20 10 41 41 H 1.09000 * 109.46752 * 180.02562 * 22 20 10 42 42 H 1.09003 * 109.46764 * 300.00014 * 22 20 10 43 43 H 1.08001 * 120.00188 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2893 2.3799 0.0005 5 6 1.8928 3.5992 0.0000 6 6 3.3006 3.7048 -0.0005 7 7 4.0644 4.8149 0.0046 8 6 5.3365 4.6719 -0.0014 9 6 6.3292 5.8058 -0.0020 10 7 6.6449 6.1808 1.3827 11 6 5.5168 6.8838 2.0081 12 6 5.7752 7.0343 3.4851 13 1 6.6865 6.6469 3.9161 14 6 4.8482 7.6666 4.2863 15 7 5.0734 7.7975 5.5753 16 14 3.2715 8.3361 3.5410 17 1 2.2213 7.2869 3.5796 18 1 2.8195 9.5180 4.3182 19 1 3.5205 8.7356 2.1326 20 6 7.8686 6.9914 1.4426 21 6 9.0620 6.1473 0.9907 22 6 7.7230 8.2037 0.5207 23 16 5.7625 2.9660 -0.0012 24 6 4.0560 2.5279 -0.0011 25 6 3.4250 1.2851 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2110 2.3178 0.0005 30 1 1.2893 4.4948 0.0000 31 1 5.9013 6.6629 -0.5220 32 1 7.2406 5.4906 -0.5099 33 1 5.4074 7.8696 1.5561 34 1 4.6021 6.3107 1.8559 35 1 4.4215 8.2426 6.1389 36 1 8.0302 7.3304 2.4659 37 1 8.9565 5.9058 -0.0670 38 1 9.9834 6.7089 1.1448 39 1 9.0965 5.2259 1.5721 40 1 6.8729 8.8050 0.8427 41 1 8.6312 8.8049 0.5649 42 1 7.5615 7.8646 -0.5026 43 1 4.0143 0.3801 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530553329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:06 Heat of formation + Delta-G solvation = 7.625182 kcal Electronic energy + Delta-G solvation = -24523.954900 eV Core-core repulsion = 21081.548220 eV Total energy + Delta-G solvation = -3442.406680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62589 -40.21895 -39.32522 -36.83320 -34.85210 -32.92538 -32.40410 -31.31191 -29.55219 -28.20420 -27.95845 -26.93336 -24.67636 -23.88444 -23.43063 -21.81065 -20.30484 -19.74200 -18.88679 -18.59620 -17.57514 -17.07791 -16.77970 -16.70353 -16.48829 -16.06720 -15.36435 -15.31260 -15.07667 -14.81250 -14.67319 -14.46987 -14.21459 -13.90151 -13.75649 -13.56583 -13.38042 -13.14095 -12.81498 -12.69835 -12.60548 -12.49398 -12.08962 -12.02493 -11.88697 -11.76523 -11.70079 -11.51822 -11.27273 -11.19557 -10.79164 -10.62705 -9.39184 -9.08504 -8.91086 -8.30085 -6.30312 -0.59550 0.00613 0.22843 0.67750 1.26637 1.28967 1.29101 1.40597 2.26635 2.30559 2.54280 2.85675 3.04318 3.30960 3.53410 3.81963 3.88986 4.02607 4.10735 4.26047 4.32119 4.39212 4.41249 4.42338 4.48505 4.56058 4.65024 4.75144 4.78561 4.84218 4.88997 4.94010 5.03891 5.05620 5.09839 5.12244 5.26175 5.33998 5.40548 5.52746 5.60055 5.96683 6.25625 6.37110 6.58833 6.65489 6.75085 7.32230 8.86396 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004355 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.194943 B = 6428.573433 C = 7977.304816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.147 3.853 4 C -0.176 4.176 5 C -0.036 4.036 6 C 0.016 3.984 7 N -0.484 5.484 8 C 0.128 3.872 9 C 0.120 3.880 10 N -0.529 5.529 11 C 0.173 3.827 12 C -0.506 4.506 13 H 0.043 0.957 14 C 0.015 3.985 15 N -0.945 5.945 16 Si 0.933 3.067 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.254 1.254 20 C 0.078 3.922 21 C -0.134 4.134 22 C -0.176 4.176 23 S 0.087 5.913 24 C -0.150 4.150 25 C -0.127 4.127 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.175 0.825 30 H 0.145 0.855 31 H 0.065 0.935 32 H 0.126 0.874 33 H -0.008 1.008 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.032 -12.780 -17.472 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.197 4.197 5 C -0.057 4.057 6 C -0.103 4.103 7 N -0.198 5.198 8 C -0.158 4.158 9 C -0.011 4.011 10 N -0.253 5.253 11 C 0.046 3.954 12 C -0.545 4.545 13 H 0.061 0.939 14 C -0.182 4.182 15 N -0.586 5.586 16 Si 0.758 3.242 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.178 1.178 20 C -0.030 4.030 21 C -0.192 4.192 22 C -0.235 4.235 23 S 0.343 5.657 24 C -0.269 4.269 25 C -0.151 4.151 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.192 0.808 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.010 0.990 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.172 -13.309 -17.048 22.027 hybrid contribution -2.007 1.399 0.175 2.453 sum -6.180 -11.909 -16.874 21.558 Atomic orbital electron populations 1.23481 0.75726 1.06128 1.02757 1.86081 1.23988 1.25423 1.88077 1.18755 0.91411 0.85207 0.94878 1.21112 1.02170 0.90353 1.06093 1.20529 0.90096 0.99343 0.95685 1.19522 0.96202 0.86038 1.08540 1.66121 1.05368 1.31963 1.16297 1.27640 0.92634 0.97070 0.98505 1.20883 0.95877 0.92270 0.92070 1.62030 1.04740 1.44604 1.13968 1.19924 0.90499 0.91787 0.93168 1.21245 1.05277 1.35516 0.92415 0.93896 1.25651 1.01286 0.96318 0.94991 1.70024 1.37481 1.45405 1.05727 0.85914 0.80321 0.78412 0.79551 1.20121 1.20272 1.17836 1.21679 0.89527 0.92141 0.99648 1.21831 0.96152 0.99721 1.01485 1.22387 1.02166 0.98933 1.00010 1.84572 1.02133 1.03758 1.75281 1.23587 0.97403 0.98098 1.07804 1.19496 0.92380 0.95367 1.07850 0.91534 0.90914 0.85811 0.80815 0.83690 0.91719 0.85606 0.99040 0.96017 0.92548 0.92036 0.91035 0.90685 0.92923 0.94720 0.90501 0.91056 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -6.26 10.50 -92.96 -0.98 -7.23 16 3 C 0.15 3.44 6.68 22.47 0.15 3.59 16 4 C -0.18 -3.84 8.95 22.00 0.20 -3.64 16 5 C -0.04 -1.01 10.04 22.48 0.23 -0.79 16 6 C 0.02 0.55 6.95 39.80 0.28 0.83 16 7 N -0.48 -18.88 9.62 -178.43 -1.72 -20.59 16 8 C 0.13 4.56 6.46 88.67 0.57 5.14 16 9 C 0.12 3.98 4.33 85.56 0.37 4.35 16 10 N -0.53 -21.63 4.40 -880.06 -3.87 -25.50 16 11 C 0.17 8.66 3.51 85.56 0.30 8.96 16 12 C -0.51 -30.04 8.94 25.60 0.23 -29.81 16 13 H 0.04 2.80 7.41 -2.91 -0.02 2.78 16 14 C 0.01 0.90 5.47 84.66 0.46 1.36 16 15 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 16 Si 0.93 46.83 27.47 68.60 1.88 48.71 16 17 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.25 -12.19 6.54 99.48 0.65 -11.54 16 20 C 0.08 2.79 2.79 44.91 0.13 2.91 16 21 C -0.13 -3.59 8.98 71.98 0.65 -2.94 16 22 C -0.18 -5.40 8.51 71.98 0.61 -4.79 16 23 S 0.09 2.68 23.37 -56.49 -1.32 1.36 16 24 C -0.15 -4.77 6.53 22.93 0.15 -4.62 16 25 C -0.13 -3.40 10.01 22.51 0.23 -3.17 16 26 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.17 2.37 6.28 -2.91 -0.02 2.35 16 30 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.06 2.13 7.16 -2.39 -0.02 2.11 16 32 H 0.13 3.23 5.99 -2.39 -0.01 3.22 16 33 H -0.01 -0.40 5.41 -2.39 -0.01 -0.41 16 34 H 0.02 1.15 6.00 -2.39 -0.01 1.14 16 35 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.06 2.69 6.66 -2.39 -0.02 2.68 16 37 H 0.07 1.54 6.53 -2.39 -0.02 1.52 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.03 1.24 6.54 -2.39 -0.02 1.23 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.83 6.71 -2.39 -0.02 1.81 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -75.26 355.01 0.93 -74.33 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.97 Total: 10.42 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.66 Total: -21.36 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.29 Total: -106.23 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.98 Total: -7.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.88 Total: 48.71 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.36 kcal Total: -75.26 0.93 -74.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530553329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.958 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds