Wall clock time and date at job start Tue Mar 31 2020 12:47:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47078 * 2 1
4 4 C 1.53004 * 109.46958 * 119.99963 * 2 1 3
5 5 N 1.46900 * 109.47074 * 300.00259 * 4 2 1
6 6 C 1.46904 * 110.99779 * 180.02562 * 5 4 2
7 7 C 1.52996 * 109.46858 * 179.97438 * 6 5 4
8 8 H 1.09000 * 109.47753 * 305.00128 * 7 6 5
9 9 C 1.47204 * 109.47042 * 64.99895 * 7 6 5
10 10 N 5.62771 * 62.04153 * 91.48505 * 2 1 3
11 11 C 1.52996 * 109.47153 * 184.99851 * 7 6 5
12 12 C 1.50702 * 109.47159 * 175.00123 * 11 7 6
13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 7
14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 7
15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11
16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11
17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12
18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12
19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12
20 20 C 1.50700 * 109.47475 * 239.99682 * 2 1 3
21 21 C 1.38242 * 119.99137 * 239.72994 * 20 2 1
22 22 C 1.38209 * 120.01299 * 179.72643 * 21 20 2
23 23 C 1.38356 * 119.99077 * 0.54581 * 22 21 20
24 24 Cl 1.73593 * 120.01678 * 179.70341 * 23 22 21
25 25 C 1.38357 * 119.96707 * 359.72704 * 23 22 21
26 26 C 1.38209 * 119.98867 * 359.97438 * 25 23 22
27 27 H 1.08995 * 109.47582 * 299.99543 * 1 2 3
28 28 H 1.09001 * 109.46944 * 60.00584 * 1 2 3
29 29 H 1.09004 * 109.46856 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.47149 * 179.97438 * 3 2 1
31 31 H 1.08993 * 109.46982 * 299.99829 * 3 2 1
32 32 H 1.09003 * 109.46934 * 60.00321 * 3 2 1
33 33 H 1.09003 * 109.47140 * 180.02562 * 4 2 1
34 34 H 1.09004 * 109.47248 * 60.00349 * 4 2 1
35 35 H 1.00899 * 110.99585 * 303.95295 * 5 4 2
36 36 H 1.08997 * 109.46933 * 59.99775 * 6 5 4
37 37 H 1.08996 * 109.47325 * 299.99917 * 6 5 4
38 38 H 1.09004 * 109.47066 * 55.00326 * 11 7 6
39 39 H 1.08994 * 109.47405 * 295.00156 * 11 7 6
40 40 H 0.96996 * 119.99730 * 180.02562 * 15 14 12
41 41 H 1.08004 * 119.99118 * 359.97438 * 21 20 2
42 42 H 1.08004 * 120.00936 * 180.27009 * 22 21 20
43 43 H 1.08003 * 120.00291 * 179.97438 * 25 23 22
44 44 H 1.08007 * 119.99167 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 1.5502 -0.0288 2.4487
6 6 2.0217 -0.6946 3.6704
7 6 1.4931 0.0539 4.8955
8 1 1.7822 1.1031 4.8331
9 6 0.0253 -0.0488 4.9377
10 7 -1.1085 -0.1288 4.9692
11 6 2.0842 -0.5633 6.1645
12 6 1.6620 0.2487 7.3618
13 1 1.0344 1.1178 7.2308
14 6 2.0717 -0.1216 8.6252
15 7 1.6987 0.5839 9.6706
16 14 3.1567 -1.6252 8.8519
17 1 4.5838 -1.2215 8.7774
18 1 2.8839 -2.2371 10.1773
19 1 2.8648 -2.6122 7.7815
20 6 2.0324 -0.7105 -1.2304
21 6 2.8318 -1.8311 -1.1032
22 6 3.2882 -2.4864 -2.2313
23 6 2.9542 -2.0140 -3.4881
24 17 3.5334 -2.8320 -4.9055
25 6 2.1588 -0.8890 -3.6147
26 6 1.6979 -0.2382 -2.4859
27 1 -0.3634 0.5137 0.8900
28 1 -0.3633 0.5137 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 3.1300 1.4425 0.0005
31 1 1.6767 1.9562 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 3.1300 -0.7209 1.2496
34 1 1.6767 -1.7490 1.2493
35 1 1.8197 0.9435 2.4401
36 1 3.1116 -0.6940 3.6869
37 1 1.6587 -1.7222 3.6874
38 1 3.1720 -0.5676 6.0938
39 1 1.7231 -1.5859 6.2735
40 1 1.9873 0.3236 10.5593
41 1 3.0964 -2.1970 -0.1221
42 1 3.9091 -3.3644 -2.1319
43 1 1.8980 -0.5195 -4.5955
44 1 1.0773 0.6402 -2.5847
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000556060279.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:13
Heat of formation + Delta-G solvation = 7.801357 kcal
Electronic energy + Delta-G solvation = -23552.447609 eV
Core-core repulsion = 20108.004862 eV
Total energy + Delta-G solvation = -3444.442747 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.135 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.97205 -38.95572 -37.96461 -37.08274 -35.77654 -34.85906 -33.10342 -32.08549
-30.46592 -28.98370 -28.06870 -26.49458 -24.21336 -23.58663 -23.27133 -22.90016
-20.04804 -18.91938 -18.52442 -18.19247 -16.65307 -16.57487 -16.20396 -16.01683
-15.62265 -15.42330 -15.08912 -14.91162 -14.55439 -14.41009 -14.29788 -14.17464
-14.01241 -13.76924 -13.50516 -13.31351 -13.09741 -13.01677 -12.88426 -12.62791
-12.44485 -12.35012 -12.29434 -12.06738 -11.93307 -11.74006 -11.73209 -11.64373
-11.47476 -11.32100 -11.15600 -10.71654 -9.96613 -9.48244 -9.21560 -8.23326
-6.28649 0.19708 0.36864 1.19465 1.43114 1.46673 1.56549 2.09731
2.16804 2.42147 2.68354 3.12536 3.17484 3.36648 3.70823 3.84063
3.99054 4.03801 4.11678 4.22861 4.33447 4.39757 4.42364 4.52168
4.71591 4.74985 4.78070 4.83274 4.86843 4.91397 4.98159 5.01575
5.07566 5.12341 5.15855 5.26398 5.27141 5.31947 5.46526 5.48543
5.53592 5.65719 5.66654 5.88066 6.11320 6.28444 6.58217 6.79430
6.95411 7.35760 8.93558
Molecular weight = 320.14amu
Principal moments of inertia in cm(-1)
A = 0.022324 B = 0.002245 C = 0.002110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1253.944539 B =12466.835506 C =13269.022433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.016 4.016
3 C -0.142 4.142
4 C 0.069 3.931
5 N -0.701 5.701
6 C 0.076 3.924
7 C 0.025 3.975
8 H 0.116 0.884
9 C 0.263 3.737
10 N -0.517 5.517
11 C -0.004 4.004
12 C -0.529 4.529
13 H 0.029 0.971
14 C 0.000 4.000
15 N -0.955 5.955
16 Si 0.949 3.051
17 H -0.257 1.257
18 H -0.297 1.297
19 H -0.237 1.237
20 C -0.064 4.064
21 C -0.116 4.116
22 C -0.114 4.114
23 C -0.054 4.054
24 Cl -0.080 7.080
25 C -0.114 4.114
26 C -0.105 4.105
27 H 0.058 0.942
28 H 0.059 0.941
29 H 0.042 0.958
30 H 0.059 0.941
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.050 0.950
34 H 0.071 0.929
35 H 0.349 0.651
36 H 0.077 0.923
37 H 0.075 0.925
38 H 0.063 0.937
39 H 0.025 0.975
40 H 0.264 0.736
41 H 0.146 0.854
42 H 0.142 0.858
43 H 0.144 0.856
44 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.037 -4.361 -30.292 31.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.017 4.017
3 C -0.199 4.199
4 C -0.060 4.060
5 N -0.334 5.334
6 C -0.054 4.054
7 C 0.003 3.997
8 H 0.134 0.866
9 C -0.054 4.054
10 N -0.195 5.195
11 C -0.043 4.043
12 C -0.568 4.568
13 H 0.047 0.953
14 C -0.196 4.196
15 N -0.595 5.595
16 Si 0.772 3.228
17 H -0.181 1.181
18 H -0.224 1.224
19 H -0.160 1.160
20 C -0.065 4.065
21 C -0.134 4.134
22 C -0.133 4.133
23 C -0.081 4.081
24 Cl -0.051 7.051
25 C -0.132 4.132
26 C -0.123 4.123
27 H 0.077 0.923
28 H 0.078 0.922
29 H 0.061 0.939
30 H 0.079 0.921
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.068 0.932
34 H 0.089 0.911
35 H 0.170 0.830
36 H 0.095 0.905
37 H 0.094 0.906
38 H 0.081 0.919
39 H 0.044 0.956
40 H 0.073 0.927
41 H 0.163 0.837
42 H 0.159 0.841
43 H 0.161 0.839
44 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 5.784 -4.859 -30.210 31.140
hybrid contribution 1.307 -0.127 0.740 1.508
sum 7.091 -4.986 -29.469 30.718
Atomic orbital electron populations
1.21725 0.93380 1.01337 1.01918 1.19437 0.95953 0.95531 0.90756
1.21922 1.01215 0.93862 1.02892 1.22085 0.97640 0.97919 0.88322
1.60427 1.64640 1.07110 1.01222 1.21927 0.99102 0.97925 0.86468
1.19063 0.80113 1.03576 0.96921 0.86579 1.29486 0.95482 0.90955
0.89432 1.81042 1.14874 1.11197 1.12367 1.19587 0.98155 0.95985
0.90531 1.21422 1.31181 1.12140 0.92014 0.95271 1.26065 0.97777
1.00188 0.95571 1.70093 1.47825 1.42155 0.99460 0.85680 0.79524
0.79680 0.77920 1.18127 1.22400 1.16007 1.20035 0.96371 0.95274
0.94797 1.21351 0.97547 0.95307 0.99155 1.21243 1.00615 1.00893
0.90513 1.21109 1.01891 0.96942 0.88130 1.98367 1.87863 1.78766
1.40084 1.21230 0.97256 0.94307 1.00440 1.21130 0.99815 1.00419
0.90922 0.92260 0.92171 0.93918 0.92143 0.91545 0.91548 0.93236
0.91063 0.83048 0.90509 0.90615 0.91891 0.95627 0.92731 0.83671
0.84058 0.83858 0.83780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.18 8.13 71.98 0.59 -1.59 16
2 C -0.02 -0.23 0.67 -52.93 -0.04 -0.27 16
3 C -0.14 -1.77 7.96 71.98 0.57 -1.20 16
4 C 0.07 1.07 3.30 86.30 0.29 1.35 16
5 N -0.70 -13.61 5.41 -513.88 -2.78 -16.39 16
6 C 0.08 1.67 5.05 86.30 0.44 2.11 16
7 C 0.03 0.79 2.35 -12.60 -0.03 0.76 16
8 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16
9 C 0.26 10.40 13.67 89.43 1.22 11.62 16
10 N -0.52 -23.22 18.54 20.02 0.37 -22.85 16
11 C 0.00 -0.14 3.49 29.85 0.10 -0.03 16
12 C -0.53 -28.15 9.15 25.60 0.23 -27.91 16
13 H 0.03 1.76 7.84 -2.91 -0.02 1.73 16
14 C 0.00 0.03 5.47 84.66 0.46 0.49 16
15 N -0.95 -58.78 13.96 21.45 0.30 -58.49 16
16 Si 0.95 41.01 27.47 68.60 1.88 42.89 16
17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16
18 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16
19 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16
20 C -0.06 -0.91 4.76 -19.86 -0.09 -1.01 16
21 C -0.12 -1.62 8.97 22.26 0.20 -1.42 16
22 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16
23 C -0.05 -0.83 6.32 22.33 0.14 -0.69 16
24 Cl -0.08 -1.20 28.96 -2.72 -0.08 -1.28 16
25 C -0.11 -1.56 9.83 22.29 0.22 -1.34 16
26 C -0.10 -1.38 8.71 22.26 0.19 -1.19 16
27 H 0.06 1.24 7.60 -2.39 -0.02 1.22 16
28 H 0.06 0.87 7.39 -2.39 -0.02 0.86 16
29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16
30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.07 0.73 7.39 -2.39 -0.02 0.71 16
32 H 0.07 0.87 6.57 -2.39 -0.02 0.86 16
33 H 0.05 0.64 7.50 -2.39 -0.02 0.63 16
34 H 0.07 1.18 7.53 -2.38 -0.02 1.16 16
35 H 0.35 6.04 6.77 -89.69 -0.61 5.43 16
36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
38 H 0.06 2.14 7.58 -2.38 -0.02 2.12 16
39 H 0.03 1.01 7.19 -2.39 -0.02 0.99 16
40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
41 H 0.15 1.69 5.89 -2.91 -0.02 1.67 16
42 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16
43 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16
44 H 0.14 1.45 7.10 -2.91 -0.02 1.43 16
Total: -1.00 -68.92 374.25 4.75 -64.17
By element:
Atomic # 1 Polarization: 13.35 SS G_CDS: 0.34 Total: 13.69 kcal
Atomic # 6 Polarization: -26.46 SS G_CDS: 4.72 Total: -21.74 kcal
Atomic # 7 Polarization: -95.62 SS G_CDS: -2.11 Total: -97.73 kcal
Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal
Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal
Total: -68.92 4.75 -64.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000556060279.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.973 kcal
(2) G-P(sol) polarization free energy of solvation -68.924 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds