Wall clock time and date at job start Tue Mar 31 2020 12:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.52998 * 109.47155 * 240.00776 * 2 1 3 5 5 N 1.46900 * 109.47537 * 59.99558 * 4 2 1 6 6 C 1.46895 * 111.00028 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47136 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47263 * 305.00153 * 7 6 5 9 9 C 1.47203 * 109.47110 * 64.99944 * 7 6 5 10 10 N 5.62780 * 100.24133 * 296.19761 * 2 1 3 11 11 C 1.53001 * 109.47375 * 184.99986 * 7 6 5 12 12 C 1.50701 * 109.47126 * 174.99918 * 11 7 6 13 13 H 1.08003 * 120.00055 * 359.97438 * 12 11 7 14 14 C 1.37875 * 119.99912 * 179.97438 * 12 11 7 15 15 N 1.31514 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47585 * 89.99812 * 16 14 12 18 18 H 1.48504 * 109.47450 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.47394 * 329.99772 * 16 14 12 20 20 C 1.50693 * 109.47489 * 120.00241 * 2 1 3 21 21 C 1.38237 * 120.00782 * 239.99802 * 20 2 1 22 22 C 1.38224 * 120.01313 * 179.74160 * 21 20 2 23 23 C 1.38264 * 120.02429 * 0.28265 * 22 21 20 24 24 C 1.38190 * 120.01711 * 359.97438 * 23 22 21 25 25 C 1.38328 * 120.00847 * 60.27534 * 20 2 1 26 26 Cl 1.73603 * 120.01182 * 0.02562 * 25 20 2 27 27 H 1.09001 * 109.47121 * 299.99705 * 1 2 3 28 28 H 1.08995 * 109.46976 * 59.99538 * 1 2 3 29 29 H 1.08997 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47664 * 300.00600 * 3 2 1 32 32 H 1.09006 * 109.46983 * 60.00678 * 3 2 1 33 33 H 1.09001 * 109.47770 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46723 * 299.99574 * 4 2 1 35 35 H 1.00894 * 110.99744 * 56.04516 * 5 4 2 36 36 H 1.08994 * 109.47351 * 299.99760 * 6 5 4 37 37 H 1.09001 * 109.47344 * 60.00062 * 6 5 4 38 38 H 1.08998 * 109.46950 * 294.99593 * 11 7 6 39 39 H 1.08997 * 109.47338 * 54.99863 * 11 7 6 40 40 H 0.97003 * 119.99628 * 180.02562 * 15 14 12 41 41 H 1.08002 * 119.99593 * 0.02778 * 21 20 2 42 42 H 1.07996 * 119.98814 * 180.25946 * 22 21 20 43 43 H 1.08004 * 119.98849 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00864 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.5503 -0.0285 -2.4487 6 6 2.0209 -0.6949 -3.6703 7 6 1.4912 0.0530 -4.8956 8 1 0.4057 0.1300 -4.8331 9 6 2.0773 1.4027 -4.9378 10 7 2.5306 2.4449 -4.9692 11 6 1.8761 -0.7100 -6.1647 12 6 1.2512 -0.0413 -7.3619 13 1 0.6402 0.8396 -7.2307 14 6 1.4594 -0.5540 -8.6247 15 7 2.2038 -1.6263 -8.7845 16 14 0.6854 0.2753 -10.1087 17 1 1.6152 1.3027 -10.6428 18 1 0.4143 -0.7401 -11.1579 19 1 -0.5887 0.9227 -9.7056 20 6 2.0324 -0.7104 1.2303 21 6 2.8272 -0.0388 2.1404 22 6 3.2837 -0.6887 3.2716 23 6 2.9505 -2.0126 3.4908 24 6 2.1604 -2.6866 2.5792 25 6 1.7031 -2.0364 1.4465 26 17 0.7115 -2.8829 0.3002 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7207 -1.2496 34 1 1.6767 -1.7488 -1.2494 35 1 1.8197 0.9437 -2.4401 36 1 3.1107 -0.6950 -3.6874 37 1 1.6571 -1.7223 -3.6870 38 1 2.9607 -0.7102 -6.2736 39 1 1.5178 -1.7370 -6.0940 40 1 2.3506 -1.9868 -9.6730 41 1 3.0878 0.9954 1.9698 42 1 3.9012 -0.1624 3.9844 43 1 3.3078 -2.5200 4.3747 44 1 1.9006 -3.7209 2.7503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569034467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:20 Heat of formation + Delta-G solvation = 29.550141 kcal Electronic energy + Delta-G solvation = -24034.632262 eV Core-core repulsion = 20591.132613 eV Total energy + Delta-G solvation = -3443.499649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32380 -37.81843 -36.72063 -36.46302 -34.40314 -33.26052 -31.40454 -31.07494 -29.82800 -27.53659 -27.03906 -25.14222 -23.26058 -22.61463 -22.23958 -21.74369 -19.40029 -17.53757 -16.71180 -16.55672 -15.90158 -15.75651 -15.53114 -14.88030 -14.56272 -14.24872 -14.15901 -13.97961 -13.78228 -13.49420 -12.99367 -12.86165 -12.55800 -12.33770 -12.12521 -12.07555 -12.01643 -11.85907 -11.76766 -11.56458 -11.27801 -11.13384 -11.06690 -10.94880 -10.85757 -10.68678 -10.49471 -10.23807 -9.97432 -9.53772 -9.24435 -9.17538 -8.87433 -8.44388 -8.24384 -6.08341 -4.11356 0.85511 0.96139 1.92596 3.30633 3.31159 3.37153 3.40651 3.57310 3.62727 4.15292 4.40355 4.42498 4.53653 4.65343 4.78593 4.82332 4.90060 4.96545 5.09161 5.12373 5.29680 5.38657 5.46092 5.58445 5.58711 5.61844 5.75122 5.80112 5.82922 5.88416 5.92236 5.99444 6.04457 6.15838 6.19499 6.27906 6.39555 6.42489 6.50716 6.57240 7.14429 7.45150 7.49559 7.55215 7.86806 8.24589 8.40995 8.93238 9.53980 11.02583 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.002649 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.380946 B =10566.023949 C =11188.916566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.023 4.023 3 C -0.149 4.149 4 C 0.056 3.944 5 N -0.686 5.686 6 C 0.068 3.932 7 C 0.007 3.993 8 H 0.111 0.889 9 C 0.242 3.758 10 N -0.478 5.478 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.056 4.056 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.034 4.034 26 Cl -0.051 7.051 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.093 0.907 35 H 0.336 0.664 36 H 0.033 0.967 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -2.596 26.887 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.206 4.206 4 C -0.073 4.073 5 N -0.318 5.318 6 C -0.062 4.062 7 C -0.015 4.015 8 H 0.129 0.871 9 C -0.075 4.075 10 N -0.155 5.155 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.057 4.057 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.060 4.060 26 Cl -0.021 7.021 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.155 0.845 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.292 -1.548 26.592 26.639 hybrid contribution 0.431 0.187 -1.019 1.122 sum 0.139 -1.361 25.573 25.609 Atomic orbital electron populations 1.22022 0.92308 1.03806 1.02020 1.19532 0.97236 0.94669 0.90886 1.22009 1.00802 0.95178 1.02603 1.22315 0.96729 0.99783 0.88476 1.60599 1.63629 1.06251 1.01299 1.22059 0.97570 0.98984 0.87583 1.19339 1.00692 0.83850 0.97625 0.87100 1.29387 0.92402 0.94640 0.91029 1.81070 1.10783 1.12901 1.10785 1.19160 0.97706 0.95495 0.88260 1.21148 1.31419 1.12408 0.91396 0.92509 1.24954 0.95105 0.94890 0.99058 1.69942 1.38287 1.21875 1.22944 0.86594 0.79802 0.79212 0.82478 1.20709 1.21091 1.19716 1.19803 0.96937 0.92020 0.96925 1.21218 0.97208 1.00669 0.93758 1.21264 0.99616 0.94889 0.97479 1.21098 0.98315 0.94817 0.99256 1.21068 0.98249 1.00480 0.93010 1.20848 0.98921 0.93016 0.93263 1.98356 1.68020 1.76858 1.58887 0.93667 0.90508 0.91106 0.92547 0.91395 0.92113 0.95570 0.88924 0.84547 0.94828 0.89102 0.95792 0.94198 0.92815 0.84686 0.85545 0.85306 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.07 37.16 0.30 -1.24 16 2 C -0.02 -0.24 0.57 -155.66 -0.09 -0.32 16 3 C -0.15 -1.42 6.80 37.16 0.25 -1.17 16 4 C 0.06 0.67 4.39 -3.83 -0.02 0.66 16 5 N -0.69 -9.18 5.71 -113.78 -0.65 -9.82 16 6 C 0.07 1.03 5.12 -3.83 -0.02 1.01 16 7 C 0.01 0.13 2.42 -93.40 -0.23 -0.10 16 8 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 9 C 0.24 4.91 12.98 -20.73 -0.27 4.64 16 10 N -0.48 -10.40 18.54 42.19 0.78 -9.62 16 11 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 12 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 13 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.06 -0.55 4.76 -104.59 -0.50 -1.05 16 21 C -0.11 -0.94 8.97 -39.59 -0.36 -1.29 16 22 C -0.11 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 24 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 25 C -0.03 -0.33 6.03 -39.50 -0.24 -0.57 16 26 Cl -0.05 -0.52 22.50 -51.86 -1.17 -1.69 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.88 7.60 -51.93 -0.39 0.49 16 29 H 0.07 0.77 4.97 -51.93 -0.26 0.51 16 30 H 0.06 0.52 7.51 -51.93 -0.39 0.13 16 31 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 32 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 1.13 4.91 -51.92 -0.25 0.88 16 35 H 0.34 4.60 5.85 -39.30 -0.23 4.37 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.14 0.98 5.90 -52.49 -0.31 0.67 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -29.76 367.32 -8.97 -38.73 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.33 Total: 0.72 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.86 Total: -15.31 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.87 Total: -44.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.17 Total: -1.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.76 -8.97 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569034467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.282 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds