Wall clock time and date at job start Tue Mar 31 2020 12:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.52998 * 109.47155 * 240.00776 * 2 1 3 5 5 N 1.46900 * 109.47537 * 59.99558 * 4 2 1 6 6 C 1.46895 * 111.00028 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47136 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47263 * 305.00153 * 7 6 5 9 9 C 1.47203 * 109.47110 * 64.99944 * 7 6 5 10 10 N 5.62780 * 100.24133 * 296.19761 * 2 1 3 11 11 C 1.53001 * 109.47375 * 184.99986 * 7 6 5 12 12 C 1.50701 * 109.47126 * 174.99918 * 11 7 6 13 13 H 1.08003 * 120.00055 * 359.97438 * 12 11 7 14 14 C 1.37875 * 119.99912 * 179.97438 * 12 11 7 15 15 N 1.31514 * 119.99849 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47585 * 89.99812 * 16 14 12 18 18 H 1.48504 * 109.47450 * 209.99933 * 16 14 12 19 19 H 1.48498 * 109.47394 * 329.99772 * 16 14 12 20 20 C 1.50693 * 109.47489 * 120.00241 * 2 1 3 21 21 C 1.38237 * 120.00782 * 239.99802 * 20 2 1 22 22 C 1.38224 * 120.01313 * 179.74160 * 21 20 2 23 23 C 1.38264 * 120.02429 * 0.28265 * 22 21 20 24 24 C 1.38190 * 120.01711 * 359.97438 * 23 22 21 25 25 C 1.38328 * 120.00847 * 60.27534 * 20 2 1 26 26 Cl 1.73603 * 120.01182 * 0.02562 * 25 20 2 27 27 H 1.09001 * 109.47121 * 299.99705 * 1 2 3 28 28 H 1.08995 * 109.46976 * 59.99538 * 1 2 3 29 29 H 1.08997 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47664 * 300.00600 * 3 2 1 32 32 H 1.09006 * 109.46983 * 60.00678 * 3 2 1 33 33 H 1.09001 * 109.47770 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46723 * 299.99574 * 4 2 1 35 35 H 1.00894 * 110.99744 * 56.04516 * 5 4 2 36 36 H 1.08994 * 109.47351 * 299.99760 * 6 5 4 37 37 H 1.09001 * 109.47344 * 60.00062 * 6 5 4 38 38 H 1.08998 * 109.46950 * 294.99593 * 11 7 6 39 39 H 1.08997 * 109.47338 * 54.99863 * 11 7 6 40 40 H 0.97003 * 119.99628 * 180.02562 * 15 14 12 41 41 H 1.08002 * 119.99593 * 0.02778 * 21 20 2 42 42 H 1.07996 * 119.98814 * 180.25946 * 22 21 20 43 43 H 1.08004 * 119.98849 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00864 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.5503 -0.0285 -2.4487 6 6 2.0209 -0.6949 -3.6703 7 6 1.4912 0.0530 -4.8956 8 1 0.4057 0.1300 -4.8331 9 6 2.0773 1.4027 -4.9378 10 7 2.5306 2.4449 -4.9692 11 6 1.8761 -0.7100 -6.1647 12 6 1.2512 -0.0413 -7.3619 13 1 0.6402 0.8396 -7.2307 14 6 1.4594 -0.5540 -8.6247 15 7 2.2038 -1.6263 -8.7845 16 14 0.6854 0.2753 -10.1087 17 1 1.6152 1.3027 -10.6428 18 1 0.4143 -0.7401 -11.1579 19 1 -0.5887 0.9227 -9.7056 20 6 2.0324 -0.7104 1.2303 21 6 2.8272 -0.0388 2.1404 22 6 3.2837 -0.6887 3.2716 23 6 2.9505 -2.0126 3.4908 24 6 2.1604 -2.6866 2.5792 25 6 1.7031 -2.0364 1.4465 26 17 0.7115 -2.8829 0.3002 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.1300 -0.7207 -1.2496 34 1 1.6767 -1.7488 -1.2494 35 1 1.8197 0.9437 -2.4401 36 1 3.1107 -0.6950 -3.6874 37 1 1.6571 -1.7223 -3.6870 38 1 2.9607 -0.7102 -6.2736 39 1 1.5178 -1.7370 -6.0940 40 1 2.3506 -1.9868 -9.6730 41 1 3.0878 0.9954 1.9698 42 1 3.9012 -0.1624 3.9844 43 1 3.3078 -2.5200 4.3747 44 1 1.9006 -3.7209 2.7503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569034467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:19 Heat of formation + Delta-G solvation = 14.806722 kcal Electronic energy + Delta-G solvation = -24035.271585 eV Core-core repulsion = 20591.132613 eV Total energy + Delta-G solvation = -3444.138972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02167 -39.01582 -37.70774 -37.41076 -35.88734 -34.98642 -32.94807 -31.73296 -30.59171 -28.64882 -28.29200 -26.40516 -24.42018 -23.57140 -23.27044 -23.15043 -20.18315 -18.61860 -18.27300 -18.07576 -16.94978 -16.70657 -16.50563 -16.31663 -15.59206 -15.22113 -15.07551 -14.83510 -14.69998 -14.68383 -14.41442 -14.16963 -13.94836 -13.89904 -13.47339 -13.09403 -13.01766 -12.88716 -12.76923 -12.71928 -12.64231 -12.44976 -12.34434 -12.21958 -12.10161 -11.85003 -11.77659 -11.67915 -11.37041 -11.10947 -10.77863 -10.56090 -9.82540 -9.53979 -9.35759 -8.19840 -6.28185 0.23370 0.35234 1.22898 1.39816 1.41565 1.51221 1.92692 1.94912 2.41099 2.69869 3.15111 3.17119 3.24318 3.68672 3.75490 4.00153 4.05734 4.16575 4.21124 4.31039 4.39475 4.43668 4.50894 4.66113 4.69514 4.77306 4.80674 4.90370 4.93745 4.97674 5.00788 5.03492 5.11547 5.19296 5.23039 5.40859 5.46695 5.49731 5.54689 5.61452 5.62142 5.78865 5.92158 5.99993 6.20587 6.36873 6.74302 6.86757 7.40337 8.91211 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.002649 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.380946 B =10566.023949 C =11188.916566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.146 4.146 4 C 0.058 3.942 5 N -0.682 5.682 6 C 0.078 3.922 7 C 0.020 3.980 8 H 0.124 0.876 9 C 0.251 3.749 10 N -0.502 5.502 11 C 0.039 3.961 12 C -0.538 4.538 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.283 1.283 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.050 4.050 26 Cl -0.064 7.064 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.091 0.909 35 H 0.335 0.665 36 H 0.030 0.970 37 H 0.100 0.900 38 H 0.000 1.000 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -2.280 28.647 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.018 4.018 3 C -0.203 4.203 4 C -0.071 4.071 5 N -0.313 5.313 6 C -0.052 4.052 7 C -0.002 4.002 8 H 0.141 0.859 9 C -0.065 4.065 10 N -0.180 5.180 11 C 0.000 4.000 12 C -0.576 4.576 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.209 1.209 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.073 4.073 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.076 4.076 26 Cl -0.035 7.035 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.109 0.891 35 H 0.154 0.846 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.018 0.982 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.412 -1.227 28.367 28.396 hybrid contribution 0.504 0.073 -1.480 1.565 sum 0.092 -1.154 26.887 26.911 Atomic orbital electron populations 1.21979 0.92683 1.03454 1.01750 1.19432 0.96890 0.94983 0.90471 1.21989 1.00969 0.94652 1.02732 1.22345 0.96383 0.99851 0.88550 1.60576 1.63488 1.06165 1.01103 1.21895 0.97227 0.98995 0.87065 1.19209 1.01331 0.82657 0.96959 0.85866 1.29665 0.91785 0.94737 0.90298 1.81068 1.11624 1.13742 1.11539 1.18981 0.95805 0.95650 0.89590 1.21553 1.31090 1.12283 0.92704 0.92697 1.25730 0.95734 0.95539 1.01866 1.70038 1.39602 1.23169 1.23595 0.85682 0.79132 0.78277 0.79435 1.20942 1.20364 1.18812 1.19807 0.98128 0.92244 0.97161 1.21427 0.96936 1.01277 0.93956 1.21611 0.99186 0.95072 0.97322 1.21464 0.97243 0.94883 0.99616 1.21320 0.98340 1.01227 0.92743 1.21020 0.99579 0.93253 0.93776 1.98345 1.68509 1.77105 1.59538 0.92994 0.91616 0.91516 0.92250 0.92517 0.90693 0.96091 0.89088 0.84645 0.95183 0.88148 0.98205 0.94691 0.92714 0.83672 0.83013 0.82651 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.07 71.98 0.58 -2.35 16 2 C -0.02 -0.34 0.57 -52.93 -0.03 -0.38 16 3 C -0.15 -2.63 6.80 71.98 0.49 -2.14 16 4 C 0.06 1.35 4.39 86.30 0.38 1.73 16 5 N -0.68 -17.84 5.71 -513.89 -2.93 -20.77 16 6 C 0.08 2.34 5.12 86.31 0.44 2.79 16 7 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 8 H 0.12 4.26 8.14 -2.38 -0.02 4.25 16 9 C 0.25 10.10 12.98 89.43 1.16 11.26 16 10 N -0.50 -21.68 18.54 20.02 0.37 -21.31 16 11 C 0.04 1.81 4.42 29.85 0.13 1.94 16 12 C -0.54 -28.85 8.60 25.60 0.22 -28.63 16 13 H 0.05 2.91 7.59 -2.91 -0.02 2.88 16 14 C 0.01 0.56 5.46 84.65 0.46 1.02 16 15 N -0.92 -53.70 13.29 21.45 0.28 -53.41 16 16 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 C -0.07 -1.34 4.76 -19.85 -0.09 -1.43 16 21 C -0.12 -1.76 8.97 22.27 0.20 -1.56 16 22 C -0.11 -1.33 10.05 22.27 0.22 -1.11 16 23 C -0.11 -1.31 10.05 22.26 0.22 -1.09 16 24 C -0.12 -1.75 9.83 22.29 0.22 -1.53 16 25 C -0.05 -0.93 6.03 22.32 0.13 -0.80 16 26 Cl -0.06 -1.31 22.50 -2.72 -0.06 -1.37 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.48 7.60 -2.39 -0.02 1.46 16 29 H 0.07 1.43 4.97 -2.39 -0.01 1.42 16 30 H 0.06 1.02 7.51 -2.39 -0.02 1.00 16 31 H 0.06 1.14 6.57 -2.39 -0.02 1.13 16 32 H 0.07 1.12 7.51 -2.38 -0.02 1.10 16 33 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 2.19 4.91 -2.38 -0.01 2.18 16 35 H 0.33 8.98 5.85 -89.70 -0.52 8.46 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.15 1.78 5.90 -2.91 -0.02 1.76 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 44 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -62.91 367.32 4.89 -58.02 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.49 Total: 14.52 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.71 Total: -21.56 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -2.28 Total: -95.50 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.06 Total: -1.37 kcal Total: -62.91 4.89 -58.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569034467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.831 kcal (2) G-P(sol) polarization free energy of solvation -62.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds