Wall clock time and date at job start Tue Mar 31 2020 12:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.53002 * 109.46825 * 119.99498 * 2 1 3 5 5 N 1.46901 * 109.47515 * 300.00093 * 4 2 1 6 6 C 1.46895 * 111.00119 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47270 * 179.97438 * 6 5 4 8 8 H 1.09009 * 109.47154 * 54.99975 * 7 6 5 9 9 C 1.47200 * 109.47451 * 295.00037 * 7 6 5 10 10 N 5.62777 * 100.24138 * 63.80445 * 2 1 3 11 11 C 1.52996 * 109.47347 * 174.99819 * 7 6 5 12 12 C 1.50702 * 109.47159 * 185.00014 * 11 7 6 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 7 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 7 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.50697 * 109.47320 * 239.99654 * 2 1 3 21 21 C 1.38239 * 120.00468 * 0.02562 * 20 2 1 22 22 C 1.38219 * 120.00953 * 179.97438 * 21 20 2 23 23 C 1.38257 * 120.03078 * 0.04464 * 22 21 20 24 24 C 1.38196 * 120.01197 * 359.97438 * 23 22 21 25 25 C 1.38333 * 120.00555 * 179.73011 * 20 2 1 26 26 Cl 1.73601 * 120.01458 * 359.97286 * 25 20 2 27 27 H 1.09002 * 109.47394 * 300.00440 * 1 2 3 28 28 H 1.09002 * 109.46823 * 60.00373 * 1 2 3 29 29 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47333 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46882 * 299.99591 * 3 2 1 32 32 H 1.09002 * 109.47260 * 59.99478 * 3 2 1 33 33 H 1.09002 * 109.47245 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47056 * 60.00054 * 4 2 1 35 35 H 1.00905 * 110.99468 * 303.95636 * 5 4 2 36 36 H 1.08998 * 109.47324 * 59.99878 * 6 5 4 37 37 H 1.09002 * 109.47421 * 300.00055 * 6 5 4 38 38 H 1.09004 * 109.47066 * 65.00217 * 11 7 6 39 39 H 1.08994 * 109.47405 * 305.00047 * 11 7 6 40 40 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 41 41 H 1.07998 * 119.99583 * 359.97438 * 21 20 2 42 42 H 1.08002 * 119.98414 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99636 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.00783 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.5502 -0.0286 2.4488 6 6 2.0207 -0.6950 3.6704 7 6 1.4922 0.0536 4.8956 8 1 0.4067 0.1315 4.8335 9 6 2.0793 1.4028 4.9373 10 7 2.5306 2.4447 4.9693 11 6 1.8769 -0.7094 6.1647 12 6 1.2530 -0.0399 7.3620 13 1 0.6427 0.8415 7.2308 14 6 1.4562 -0.5561 8.6243 15 7 2.1990 -1.6296 8.7839 16 14 0.6765 0.2694 10.1075 17 1 -0.1061 1.4502 9.6623 18 1 -0.2249 -0.6920 10.7921 19 1 1.7403 0.7057 11.0473 20 6 2.0324 -0.7105 -1.2304 21 6 1.1342 -1.2355 -2.1407 22 6 1.5948 -1.8867 -3.2695 23 6 2.9540 -2.0142 -3.4885 24 6 3.8528 -1.4901 -2.5790 25 6 3.3924 -0.8320 -1.4522 26 17 4.5209 -0.1656 -0.3137 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1299 -0.7216 1.2492 34 1 1.6766 -1.7488 1.2494 35 1 1.8197 0.9437 2.4401 36 1 3.1106 -0.6953 3.6875 37 1 1.6569 -1.7224 3.6870 38 1 2.9615 -0.7106 6.2732 39 1 1.5177 -1.7361 6.0943 40 1 2.3422 -1.9926 9.6720 41 1 0.0724 -1.1368 -1.9698 42 1 0.8927 -2.2963 -3.9806 43 1 3.3133 -2.5235 -4.3705 44 1 4.9146 -1.5894 -2.7503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569034479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:22 Heat of formation + Delta-G solvation = 14.657533 kcal Electronic energy + Delta-G solvation = -24053.655022 eV Core-core repulsion = 20609.509580 eV Total energy + Delta-G solvation = -3444.145441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01795 -39.01360 -37.71400 -37.45908 -35.89825 -34.98109 -32.94819 -31.72272 -30.59082 -28.63925 -28.25337 -26.43549 -24.43542 -23.56175 -23.29177 -23.07103 -20.16636 -18.60747 -18.29323 -18.03468 -17.17418 -16.67658 -16.43290 -16.08021 -15.58315 -15.52120 -15.03054 -14.82908 -14.70135 -14.69296 -14.42865 -14.08001 -13.93164 -13.85501 -13.47853 -13.11442 -13.06060 -12.85929 -12.74113 -12.65207 -12.58168 -12.46950 -12.34503 -12.23236 -12.08642 -11.91365 -11.79119 -11.65034 -11.37361 -11.09903 -10.95016 -10.56087 -9.81638 -9.58636 -9.24990 -8.19910 -6.28097 0.23016 0.35925 1.18989 1.38806 1.41580 1.52272 1.93277 1.95378 2.41125 2.70350 3.15130 3.18205 3.24861 3.68861 3.82700 3.96759 4.05830 4.18482 4.23365 4.33471 4.40666 4.45029 4.50482 4.66791 4.73909 4.80564 4.81463 4.88362 4.93602 4.98598 4.99581 5.07494 5.10879 5.19350 5.32093 5.36775 5.46574 5.47222 5.57951 5.61935 5.64068 5.79083 5.93064 6.01285 6.20916 6.34908 6.74339 6.87019 7.40454 8.91309 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.002585 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.215783 B =10830.289001 C =10933.730661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.016 4.016 3 C -0.158 4.158 4 C 0.058 3.942 5 N -0.682 5.682 6 C 0.079 3.921 7 C 0.020 3.980 8 H 0.125 0.875 9 C 0.251 3.749 10 N -0.504 5.504 11 C 0.038 3.962 12 C -0.537 4.537 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.950 3.050 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.285 1.285 20 C -0.071 4.071 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.051 4.051 26 Cl -0.075 7.075 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.334 0.666 36 H 0.026 0.974 37 H 0.104 0.896 38 H -0.002 1.002 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -3.130 -28.755 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 C -0.215 4.215 4 C -0.071 4.071 5 N -0.313 5.313 6 C -0.052 4.052 7 C -0.002 4.002 8 H 0.143 0.857 9 C -0.065 4.065 10 N -0.182 5.182 11 C 0.000 4.000 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.197 1.197 19 H -0.212 1.212 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.078 4.078 26 Cl -0.046 7.046 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.044 0.956 37 H 0.122 0.878 38 H 0.017 0.983 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.485 -1.933 -28.477 28.581 hybrid contribution 0.972 0.374 1.504 1.830 sum -0.513 -1.559 -26.973 27.023 Atomic orbital electron populations 1.21812 0.92134 1.02465 1.02339 1.19421 0.97432 0.94319 0.90505 1.22172 1.02381 0.94944 1.02013 1.22279 0.98424 0.97983 0.88441 1.60584 1.63427 1.06132 1.01154 1.21902 0.97073 0.99124 0.87080 1.19227 1.01369 0.82573 0.97000 0.85699 1.29677 0.91792 0.94793 0.90284 1.81024 1.11679 1.13894 1.11558 1.18985 0.95744 0.95713 0.89598 1.21579 1.31090 1.12120 0.92740 0.92741 1.25733 0.95749 0.95545 1.01862 1.70046 1.39688 1.23095 1.23568 0.85624 0.78399 0.78836 0.79594 1.19346 1.19738 1.21157 1.19813 0.91213 0.99000 0.97185 1.21460 1.00680 0.97267 0.93582 1.21639 0.96295 0.97668 0.97408 1.21461 0.93079 0.99147 0.99474 1.21292 1.01620 0.97966 0.92976 1.21039 0.90212 1.02742 0.93775 1.98341 1.61573 1.84133 1.60550 0.91752 0.91824 0.91788 0.91889 0.91920 0.92619 0.93982 0.90744 0.84786 0.95564 0.87755 0.98341 0.94535 0.92723 0.83138 0.82760 0.82684 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 6.97 71.98 0.50 -1.74 16 2 C -0.02 -0.32 0.57 -52.93 -0.03 -0.35 16 3 C -0.16 -3.33 7.89 71.98 0.57 -2.76 16 4 C 0.06 1.32 4.40 86.30 0.38 1.70 16 5 N -0.68 -17.71 5.71 -513.90 -2.93 -20.64 16 6 C 0.08 2.33 5.12 86.30 0.44 2.78 16 7 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 8 H 0.13 4.27 8.14 -2.38 -0.02 4.25 16 9 C 0.25 10.22 12.98 89.44 1.16 11.38 16 10 N -0.50 -22.19 18.54 20.00 0.37 -21.82 16 11 C 0.04 1.80 4.42 29.85 0.13 1.94 16 12 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 13 H 0.05 2.89 7.59 -2.91 -0.02 2.87 16 14 C 0.01 0.55 5.46 84.66 0.46 1.01 16 15 N -0.92 -53.61 13.29 21.45 0.28 -53.32 16 16 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.07 -1.29 4.76 -19.84 -0.09 -1.38 16 21 C -0.11 -1.57 8.98 22.27 0.20 -1.37 16 22 C -0.11 -1.23 10.05 22.27 0.22 -1.01 16 23 C -0.11 -1.29 10.05 22.26 0.22 -1.06 16 24 C -0.12 -1.83 9.83 22.29 0.22 -1.61 16 25 C -0.05 -0.98 6.03 22.33 0.13 -0.85 16 26 Cl -0.08 -1.64 22.50 -2.72 -0.06 -1.70 16 27 H 0.06 1.29 7.60 -2.39 -0.02 1.27 16 28 H 0.06 0.91 7.51 -2.39 -0.02 0.89 16 29 H 0.06 1.01 7.52 -2.39 -0.02 0.99 16 30 H 0.06 1.42 4.91 -2.39 -0.01 1.41 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.26 6.57 -2.39 -0.02 1.25 16 33 H 0.04 1.04 4.97 -2.39 -0.01 1.03 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.33 9.26 5.85 -89.69 -0.52 8.73 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.00 -0.10 8.14 -2.38 -0.02 -0.11 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 41 H 0.15 1.64 5.90 -2.91 -0.02 1.62 16 42 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 43 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 44 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -63.39 367.31 4.89 -58.50 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.49 Total: 14.28 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.71 Total: -21.19 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.28 Total: -95.78 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.06 Total: -1.70 kcal Total: -63.39 4.89 -58.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569034479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.162 kcal (2) G-P(sol) polarization free energy of solvation -63.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds