Wall clock time and date at job start Tue Mar 31 2020 12:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 H 1.08996 * 109.47337 * 302.82601 * 3 2 1 5 5 C 1.52998 * 109.47143 * 182.82111 * 3 2 1 6 6 C 1.50699 * 109.47157 * 175.00271 * 5 3 2 7 7 C 1.38248 * 119.98548 * 269.72773 * 6 5 3 8 8 C 1.38211 * 120.01017 * 179.72496 * 7 6 5 9 9 C 1.38355 * 119.99072 * 0.55096 * 8 7 6 10 10 Cl 1.73593 * 120.01485 * 179.70337 * 9 8 7 11 11 C 1.38353 * 119.96662 * 359.72472 * 9 8 7 12 12 C 1.38212 * 119.99074 * 0.02562 * 11 9 8 13 13 N 1.46906 * 109.47024 * 62.82951 * 3 2 1 14 14 C 1.46899 * 111.00452 * 60.17385 * 13 3 2 15 15 C 1.52994 * 109.47174 * 185.22647 * 14 13 3 16 16 H 1.08998 * 109.47607 * 54.99882 * 15 14 13 17 17 C 1.47203 * 109.46832 * 294.99945 * 15 14 13 18 18 N 6.02321 * 98.43459 * 40.39910 * 2 1 3 19 19 C 1.52997 * 109.47120 * 175.00438 * 15 14 13 20 20 C 1.50701 * 109.47142 * 184.99842 * 19 15 14 21 21 H 1.08000 * 119.99932 * 359.97438 * 20 19 15 22 22 C 1.37883 * 119.99770 * 179.97438 * 20 19 15 23 23 N 1.31504 * 120.00105 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99555 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47651 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47096 * 120.00357 * 24 22 20 27 27 H 1.48500 * 109.47171 * 240.00083 * 24 22 20 28 28 H 1.09003 * 109.47127 * 54.81343 * 1 2 3 29 29 H 1.08999 * 109.47488 * 174.81481 * 1 2 3 30 30 H 1.09000 * 109.47200 * 294.81534 * 1 2 3 31 31 H 1.09001 * 109.47097 * 240.00201 * 2 1 3 32 32 H 1.09003 * 109.47189 * 120.00476 * 2 1 3 33 33 H 1.09000 * 109.47642 * 295.00510 * 5 3 2 34 34 H 1.08998 * 109.46912 * 55.00301 * 5 3 2 35 35 H 1.08004 * 119.99208 * 0.02562 * 7 6 5 36 36 H 1.08010 * 120.00828 * 180.27159 * 8 7 6 37 37 H 1.08008 * 120.00248 * 179.97438 * 11 9 8 38 38 H 1.08001 * 119.99322 * 179.97438 * 12 11 9 39 39 H 1.00895 * 111.00096 * 184.13678 * 13 3 2 40 40 H 1.09000 * 109.46884 * 65.22536 * 14 13 3 41 41 H 1.09000 * 109.46739 * 305.23164 * 14 13 3 42 42 H 1.09004 * 109.46705 * 304.99910 * 19 15 14 43 43 H 1.08995 * 109.47303 * 64.99361 * 19 15 14 44 44 H 0.97005 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6359 1.9707 -0.8635 5 6 3.5683 1.4430 -0.0710 6 6 4.0649 2.8605 -0.1947 7 6 4.2426 3.4237 -1.4447 8 6 4.6926 4.7256 -1.5586 9 6 4.9762 5.4613 -0.4217 10 17 5.5488 7.0938 -0.5643 11 6 4.8036 4.8950 0.8288 12 6 4.3486 3.5949 0.9416 13 7 1.6069 2.1150 1.2322 14 6 2.1374 1.4315 2.4194 15 6 1.5618 2.0790 3.6804 16 1 0.4731 2.0747 3.6266 17 6 2.0425 3.4666 3.7826 18 7 2.4135 4.5374 3.8615 19 6 2.0147 1.2905 4.9108 20 6 1.3500 1.8531 6.1407 21 1 0.6726 2.6897 6.0536 22 6 1.6068 1.2998 7.3773 23 7 2.4320 0.2815 7.4835 24 14 0.7823 1.9968 8.9017 25 1 -0.0944 3.1314 8.5154 26 1 -0.0343 0.9394 9.5501 27 1 1.8196 2.4733 9.8515 28 1 -0.3633 0.5922 -0.8399 29 1 -0.3634 -1.0234 -0.0929 30 1 -0.3633 0.4313 0.9328 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9744 0.9936 0.8352 34 1 3.8919 0.8677 -0.9383 35 1 4.0250 2.8480 -2.3322 36 1 4.8272 5.1670 -2.5351 37 1 5.0252 5.4687 1.7166 38 1 4.2142 3.1527 1.9177 39 1 1.8734 3.0881 1.2259 40 1 3.2241 1.5152 2.4316 41 1 1.8544 0.3793 2.3896 42 1 1.7360 0.2432 4.7940 43 1 3.0969 1.3690 5.0145 44 1 2.6129 -0.1076 8.3534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569213840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:37 Heat of formation + Delta-G solvation = 17.523426 kcal Electronic energy + Delta-G solvation = -24418.124629 eV Core-core repulsion = 20974.103463 eV Total energy + Delta-G solvation = -3444.021167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00969 -38.16421 -36.63649 -36.13542 -33.89061 -32.55042 -32.30167 -31.24732 -30.60713 -28.07307 -26.33338 -24.06122 -23.38393 -22.98245 -21.80203 -21.36883 -19.67135 -17.31732 -16.90162 -16.65787 -16.16326 -15.67831 -15.45307 -14.88085 -14.50872 -14.25620 -13.83793 -13.66492 -13.56843 -13.42171 -13.24334 -12.97461 -12.72801 -12.46549 -12.13475 -12.08624 -11.90892 -11.81149 -11.48081 -11.37968 -11.18531 -11.13604 -11.02168 -10.92658 -10.82668 -10.69750 -10.52199 -10.43747 -10.24283 -9.55082 -9.23364 -9.21048 -8.80809 -8.47202 -8.23671 -6.11121 -4.13949 0.95002 1.11982 1.98782 3.27539 3.36002 3.40679 3.42918 3.56902 3.63788 4.24968 4.41600 4.48625 4.56638 4.70074 4.78183 4.92900 5.04944 5.08208 5.15332 5.21398 5.27276 5.40828 5.46049 5.49626 5.58878 5.65160 5.66926 5.79015 5.84747 5.91800 6.02324 6.05623 6.11700 6.16032 6.27557 6.35063 6.39712 6.50852 6.54369 6.64376 7.12272 7.41280 7.44519 7.51289 7.84333 8.21967 8.40453 8.90915 9.51786 10.99741 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003580 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.550703 B = 7819.573653 C = 9699.683419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.081 0.919 5 C -0.124 4.124 6 C -0.075 4.075 7 C -0.107 4.107 8 C -0.110 4.110 9 C -0.040 4.040 10 Cl -0.076 7.076 11 C -0.097 4.097 12 C -0.105 4.105 13 N -0.680 5.680 14 C 0.057 3.943 15 C 0.007 3.993 16 H 0.110 0.890 17 C 0.238 3.762 18 N -0.473 5.473 19 C 0.033 3.967 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.890 3.110 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.284 1.284 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.340 0.660 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 1.251 -20.765 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.015 4.015 4 H 0.099 0.901 5 C -0.163 4.163 6 C -0.075 4.075 7 C -0.125 4.125 8 C -0.128 4.128 9 C -0.066 4.066 10 Cl -0.048 7.048 11 C -0.115 4.115 12 C -0.123 4.123 13 N -0.311 5.311 14 C -0.072 4.072 15 C -0.015 4.015 16 H 0.127 0.873 17 C -0.078 4.078 18 N -0.149 5.149 19 C -0.006 4.006 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.718 3.282 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.210 1.210 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.964 2.579 -20.509 20.881 hybrid contribution 0.549 0.454 1.009 1.235 sum 3.513 3.033 -19.500 20.045 Atomic orbital electron populations 1.21634 0.94898 1.00559 1.02893 1.21626 0.97145 0.94846 1.01977 1.21638 0.90412 0.95959 0.93535 0.90075 1.21504 0.98474 0.92408 1.03956 1.20001 0.98049 0.96517 0.92952 1.20966 0.99796 0.94478 0.97299 1.21008 0.99995 0.94366 0.97461 1.20928 1.03774 0.86775 0.95169 1.98365 1.87553 1.20483 1.98350 1.21119 0.98634 0.95571 0.96206 1.21176 0.98562 0.93699 0.98906 1.60703 1.62756 1.06357 1.01264 1.22238 0.97001 0.99739 0.88260 1.19321 1.01726 0.83324 0.97137 0.87271 1.29321 0.92423 0.94790 0.91291 1.81039 1.10497 1.12957 1.10453 1.19154 0.97297 0.95196 0.88909 1.21181 1.27171 1.16302 0.91663 0.92477 1.24941 0.95048 0.94846 0.99082 1.69940 1.35268 1.23352 1.24450 0.86558 0.79442 0.79130 0.83094 1.19671 1.20831 1.21018 0.93380 0.93595 0.91085 0.92119 0.91202 0.89901 0.90262 0.85193 0.85151 0.84870 0.85202 0.84155 0.94626 0.88625 0.94314 0.95867 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.71 37.16 0.36 -1.00 16 2 C -0.12 -1.07 5.16 -26.73 -0.14 -1.21 16 3 C 0.10 0.92 2.56 -67.71 -0.17 0.75 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -1.16 4.60 -27.88 -0.13 -1.28 16 6 C -0.07 -0.79 4.72 -104.62 -0.49 -1.29 16 7 C -0.11 -1.01 9.70 -39.59 -0.38 -1.40 16 8 C -0.11 -1.11 9.83 -39.55 -0.39 -1.49 16 9 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 10 Cl -0.08 -0.87 28.96 -51.86 -1.50 -2.37 16 11 C -0.10 -1.25 9.83 -39.55 -0.39 -1.64 16 12 C -0.11 -1.32 8.38 -39.59 -0.33 -1.65 16 13 N -0.68 -8.20 5.73 -106.73 -0.61 -8.81 16 14 C 0.06 0.78 4.16 -3.83 -0.02 0.76 16 15 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 16 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 17 C 0.24 4.61 12.98 -20.76 -0.27 4.34 16 18 N -0.47 -9.79 18.54 42.15 0.78 -9.01 16 19 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 20 C -0.52 -13.74 8.60 -34.44 -0.30 -14.04 16 21 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 24 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.68 6.15 -51.93 -0.32 0.36 16 33 H 0.08 0.84 6.20 -51.93 -0.32 0.52 16 34 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.13 1.80 6.29 -52.49 -0.33 1.47 16 39 H 0.34 4.51 6.29 -39.29 -0.25 4.26 16 40 H 0.04 0.49 4.97 -51.93 -0.26 0.23 16 41 H 0.10 1.23 5.98 -51.93 -0.31 0.92 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -28.44 375.11 -9.68 -38.12 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.38 Total: 2.45 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -3.34 Total: -17.74 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.91 Total: -42.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.44 -9.68 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569213840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.646 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds