Wall clock time and date at job start Tue Mar 31 2020 12:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 H 1.08996 * 109.47337 * 302.82601 * 3 2 1 5 5 C 1.52998 * 109.47143 * 182.82111 * 3 2 1 6 6 C 1.50699 * 109.47157 * 175.00271 * 5 3 2 7 7 C 1.38248 * 119.98548 * 269.72773 * 6 5 3 8 8 C 1.38211 * 120.01017 * 179.72496 * 7 6 5 9 9 C 1.38355 * 119.99072 * 0.55096 * 8 7 6 10 10 Cl 1.73593 * 120.01485 * 179.70337 * 9 8 7 11 11 C 1.38353 * 119.96662 * 359.72472 * 9 8 7 12 12 C 1.38212 * 119.99074 * 0.02562 * 11 9 8 13 13 N 1.46906 * 109.47024 * 62.82951 * 3 2 1 14 14 C 1.46899 * 111.00452 * 60.17385 * 13 3 2 15 15 C 1.52994 * 109.47174 * 185.22647 * 14 13 3 16 16 H 1.08998 * 109.47607 * 54.99882 * 15 14 13 17 17 C 1.47203 * 109.46832 * 294.99945 * 15 14 13 18 18 N 6.02321 * 98.43459 * 40.39910 * 2 1 3 19 19 C 1.52997 * 109.47120 * 175.00438 * 15 14 13 20 20 C 1.50701 * 109.47142 * 184.99842 * 19 15 14 21 21 H 1.08000 * 119.99932 * 359.97438 * 20 19 15 22 22 C 1.37883 * 119.99770 * 179.97438 * 20 19 15 23 23 N 1.31504 * 120.00105 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99555 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47651 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47096 * 120.00357 * 24 22 20 27 27 H 1.48500 * 109.47171 * 240.00083 * 24 22 20 28 28 H 1.09003 * 109.47127 * 54.81343 * 1 2 3 29 29 H 1.08999 * 109.47488 * 174.81481 * 1 2 3 30 30 H 1.09000 * 109.47200 * 294.81534 * 1 2 3 31 31 H 1.09001 * 109.47097 * 240.00201 * 2 1 3 32 32 H 1.09003 * 109.47189 * 120.00476 * 2 1 3 33 33 H 1.09000 * 109.47642 * 295.00510 * 5 3 2 34 34 H 1.08998 * 109.46912 * 55.00301 * 5 3 2 35 35 H 1.08004 * 119.99208 * 0.02562 * 7 6 5 36 36 H 1.08010 * 120.00828 * 180.27159 * 8 7 6 37 37 H 1.08008 * 120.00248 * 179.97438 * 11 9 8 38 38 H 1.08001 * 119.99322 * 179.97438 * 12 11 9 39 39 H 1.00895 * 111.00096 * 184.13678 * 13 3 2 40 40 H 1.09000 * 109.46884 * 65.22536 * 14 13 3 41 41 H 1.09000 * 109.46739 * 305.23164 * 14 13 3 42 42 H 1.09004 * 109.46705 * 304.99910 * 19 15 14 43 43 H 1.08995 * 109.47303 * 64.99361 * 19 15 14 44 44 H 0.97005 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6359 1.9707 -0.8635 5 6 3.5683 1.4430 -0.0710 6 6 4.0649 2.8605 -0.1947 7 6 4.2426 3.4237 -1.4447 8 6 4.6926 4.7256 -1.5586 9 6 4.9762 5.4613 -0.4217 10 17 5.5488 7.0938 -0.5643 11 6 4.8036 4.8950 0.8288 12 6 4.3486 3.5949 0.9416 13 7 1.6069 2.1150 1.2322 14 6 2.1374 1.4315 2.4194 15 6 1.5618 2.0790 3.6804 16 1 0.4731 2.0747 3.6266 17 6 2.0425 3.4666 3.7826 18 7 2.4135 4.5374 3.8615 19 6 2.0147 1.2905 4.9108 20 6 1.3500 1.8531 6.1407 21 1 0.6726 2.6897 6.0536 22 6 1.6068 1.2998 7.3773 23 7 2.4320 0.2815 7.4835 24 14 0.7823 1.9968 8.9017 25 1 -0.0944 3.1314 8.5154 26 1 -0.0343 0.9394 9.5501 27 1 1.8196 2.4733 9.8515 28 1 -0.3633 0.5922 -0.8399 29 1 -0.3634 -1.0234 -0.0929 30 1 -0.3633 0.4313 0.9328 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9744 0.9936 0.8352 34 1 3.8919 0.8677 -0.9383 35 1 4.0250 2.8480 -2.3322 36 1 4.8272 5.1670 -2.5351 37 1 5.0252 5.4687 1.7166 38 1 4.2142 3.1527 1.9177 39 1 1.8734 3.0881 1.2259 40 1 3.2241 1.5152 2.4316 41 1 1.8544 0.3793 2.3896 42 1 1.7360 0.2432 4.7940 43 1 3.0969 1.3690 5.0145 44 1 2.6129 -0.1076 8.3534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569213840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:36 Heat of formation + Delta-G solvation = 4.112656 kcal Electronic energy + Delta-G solvation = -24418.706164 eV Core-core repulsion = 20974.103463 eV Total energy + Delta-G solvation = -3444.602701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87334 -39.20442 -37.77256 -37.28508 -35.60981 -34.15345 -33.08747 -32.19558 -31.80395 -29.12411 -27.82830 -25.11965 -24.49283 -23.87997 -23.53932 -22.17731 -20.53692 -18.55996 -18.26697 -18.09106 -17.37641 -16.71851 -16.49563 -16.30740 -15.62518 -15.26592 -14.87207 -14.69543 -14.63573 -14.51555 -14.32339 -14.19650 -14.10659 -13.81118 -13.63971 -13.20167 -13.05103 -12.93956 -12.74168 -12.72120 -12.52082 -12.35004 -12.30646 -12.10832 -11.98268 -11.86114 -11.74817 -11.45549 -11.41144 -11.20234 -11.09732 -10.55239 -10.07150 -9.69444 -9.17577 -8.19507 -6.27055 0.09518 0.26471 1.10905 1.38043 1.41443 1.51504 1.99718 2.02828 2.41219 2.57938 3.16048 3.28276 3.30108 3.68338 3.75931 3.87506 4.11084 4.19150 4.25547 4.30404 4.38501 4.43895 4.48051 4.63714 4.69295 4.76425 4.80612 4.89368 4.94154 4.96702 5.04126 5.16615 5.18490 5.23196 5.27520 5.36317 5.48129 5.51056 5.59166 5.64002 5.72727 5.80062 5.82203 6.12781 6.25206 6.41974 6.79737 6.89104 7.41463 8.91450 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003580 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.550703 B = 7819.573653 C = 9699.683419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.092 0.908 5 C -0.119 4.119 6 C -0.074 4.074 7 C -0.098 4.098 8 C -0.107 4.107 9 C -0.051 4.051 10 Cl -0.078 7.078 11 C -0.118 4.118 12 C -0.119 4.119 13 N -0.681 5.681 14 C 0.072 3.928 15 C 0.018 3.982 16 H 0.117 0.883 17 C 0.247 3.753 18 N -0.498 5.498 19 C 0.041 3.959 20 C -0.537 4.537 21 H 0.051 0.949 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.286 1.286 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.332 0.668 40 H 0.034 0.966 41 H 0.108 0.892 42 H 0.035 0.965 43 H -0.001 1.001 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 0.491 -23.166 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.012 4.012 4 H 0.111 0.889 5 C -0.158 4.158 6 C -0.074 4.074 7 C -0.116 4.116 8 C -0.125 4.125 9 C -0.077 4.077 10 Cl -0.050 7.050 11 C -0.136 4.136 12 C -0.138 4.138 13 N -0.311 5.311 14 C -0.058 4.058 15 C -0.004 4.004 16 H 0.135 0.865 17 C -0.069 4.069 18 N -0.175 5.175 19 C 0.002 3.998 20 C -0.575 4.575 21 H 0.070 0.930 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.771 3.229 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.212 1.212 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.052 0.948 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.299 1.817 -22.918 23.105 hybrid contribution 0.757 0.695 1.715 1.999 sum 3.055 2.513 -21.203 21.569 Atomic orbital electron populations 1.21611 0.95342 1.00894 1.02034 1.21627 0.96663 0.94285 1.02729 1.21722 0.90757 0.96304 0.92391 0.88948 1.21492 0.97897 0.91735 1.04693 1.20162 0.97545 0.96978 0.92760 1.21341 0.98103 0.94262 0.97845 1.21338 0.98889 0.94547 0.97750 1.21047 1.04346 0.86974 0.95362 1.98359 1.87617 1.20664 1.98315 1.21052 1.00239 0.96009 0.96342 1.21073 0.99885 0.93859 0.98939 1.60683 1.62771 1.05968 1.01676 1.22034 0.96665 0.99894 0.87252 1.19228 1.02152 0.81880 0.97167 0.86488 1.29647 0.91745 0.95003 0.90536 1.81037 1.11345 1.13900 1.11252 1.18960 0.95441 0.95509 0.89889 1.21575 1.26854 1.15909 0.93182 0.93033 1.25665 0.95758 0.95293 1.01839 1.70026 1.36541 1.24500 1.25120 0.85692 0.78539 0.78674 0.79963 1.19525 1.19762 1.21180 0.92807 0.92976 0.93090 0.89800 0.92006 0.91031 0.87511 0.81722 0.82807 0.86719 0.87261 0.84965 0.94777 0.87435 0.94638 0.98230 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.71 71.98 0.70 -1.68 16 2 C -0.12 -1.74 5.16 30.59 0.16 -1.58 16 3 C 0.10 1.63 2.56 44.91 0.11 1.74 16 4 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.12 -1.89 4.60 29.85 0.14 -1.76 16 6 C -0.07 -1.43 4.72 -19.86 -0.09 -1.52 16 7 C -0.10 -1.52 9.70 22.27 0.22 -1.30 16 8 C -0.11 -1.89 9.83 22.29 0.22 -1.67 16 9 C -0.05 -1.17 6.32 22.33 0.14 -1.03 16 10 Cl -0.08 -1.76 28.96 -2.72 -0.08 -1.83 16 11 C -0.12 -3.14 9.83 22.29 0.22 -2.92 16 12 C -0.12 -3.02 8.38 22.26 0.19 -2.84 16 13 N -0.68 -15.56 5.73 -491.58 -2.82 -18.37 16 14 C 0.07 1.91 4.16 86.30 0.36 2.27 16 15 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 16 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 17 C 0.25 9.72 12.98 89.44 1.16 10.88 16 18 N -0.50 -21.15 18.54 20.01 0.37 -20.78 16 19 C 0.04 1.86 4.42 29.85 0.13 1.99 16 20 C -0.54 -28.41 8.60 25.60 0.22 -28.19 16 21 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 22 C 0.01 0.74 5.46 84.66 0.46 1.20 16 23 N -0.92 -52.64 13.29 21.45 0.28 -52.35 16 24 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.06 7.84 -2.39 -0.02 1.04 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.05 6.15 -2.39 -0.01 1.04 16 33 H 0.07 1.34 6.20 -2.39 -0.01 1.32 16 34 H 0.11 1.15 8.08 -2.39 -0.02 1.13 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.11 3.18 6.29 -2.91 -0.02 3.16 16 39 H 0.33 8.59 6.29 -89.70 -0.56 8.03 16 40 H 0.03 0.94 4.97 -2.39 -0.01 0.93 16 41 H 0.11 2.65 5.98 -2.39 -0.01 2.63 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -61.86 375.11 4.53 -57.33 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.45 Total: 16.23 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.30 Total: -25.81 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.16 Total: -91.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.83 kcal Total: -61.86 4.53 -57.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569213840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.438 kcal (2) G-P(sol) polarization free energy of solvation -61.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds