Wall clock time and date at job start Tue Mar 31 2020 12:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.08999 * 109.47300 * 56.28849 * 3 2 1 5 5 C 1.53000 * 109.47257 * 176.29189 * 3 2 1 6 6 C 1.50703 * 109.47031 * 185.00122 * 5 3 2 7 7 C 1.38237 * 119.98574 * 90.00105 * 6 5 3 8 8 C 1.38215 * 120.01073 * 179.97438 * 7 6 5 9 9 C 1.38356 * 119.98561 * 0.02562 * 8 7 6 10 10 Cl 1.73599 * 120.01131 * 180.02562 * 9 8 7 11 11 C 1.38349 * 119.97333 * 0.27831 * 9 8 7 12 12 C 1.38211 * 119.98883 * 359.42016 * 11 9 8 13 13 N 1.46901 * 109.47224 * 296.29100 * 3 2 1 14 14 C 1.46905 * 110.99957 * 306.08758 * 13 3 2 15 15 C 1.52994 * 109.47129 * 185.10591 * 14 13 3 16 16 H 1.09000 * 109.47490 * 54.99757 * 15 14 13 17 17 C 1.47199 * 109.47513 * 294.99900 * 15 14 13 18 18 N 5.15903 * 62.18219 * 301.07537 * 2 1 3 19 19 C 1.52998 * 109.47072 * 174.99900 * 15 14 13 20 20 C 1.50708 * 109.47136 * 185.00315 * 19 15 14 21 21 H 1.08002 * 119.99747 * 359.97438 * 20 19 15 22 22 C 1.37878 * 119.99861 * 180.02562 * 20 19 15 23 23 N 1.31507 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46953 * 59.99458 * 24 22 20 26 26 H 1.48492 * 109.47225 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46862 * 299.99907 * 24 22 20 28 28 H 1.08999 * 109.47050 * 296.93777 * 1 2 3 29 29 H 1.09000 * 109.47150 * 56.93371 * 1 2 3 30 30 H 1.08995 * 109.47006 * 176.94121 * 1 2 3 31 31 H 1.09002 * 109.46949 * 239.99798 * 2 1 3 32 32 H 1.08996 * 109.47040 * 120.00072 * 2 1 3 33 33 H 1.08997 * 109.47263 * 64.99914 * 5 3 2 34 34 H 1.09000 * 109.47096 * 304.99950 * 5 3 2 35 35 H 1.07990 * 119.99728 * 359.97354 * 7 6 5 36 36 H 1.08000 * 120.01080 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.00453 * 179.69865 * 11 9 8 38 38 H 1.07995 * 120.00060 * 180.29945 * 12 11 9 39 39 H 1.00902 * 111.00006 * 70.03592 * 13 3 2 40 40 H 1.08996 * 109.46699 * 305.10455 * 14 13 3 41 41 H 1.09001 * 109.47230 * 65.10768 * 14 13 3 42 42 H 1.09000 * 109.47416 * 304.99972 * 19 15 14 43 43 H 1.08997 * 109.47495 * 65.00320 * 19 15 14 44 44 H 0.97002 * 119.99899 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6234 1.9752 0.8548 5 6 3.5672 1.4435 0.0933 6 6 4.0619 2.8616 0.2170 7 6 4.2160 3.4331 1.4663 8 6 4.6702 4.7335 1.5803 9 6 4.9702 5.4633 0.4439 10 17 5.5414 7.0965 0.5864 11 6 4.8098 4.8929 -0.8063 12 6 4.3615 3.5904 -0.9189 13 7 1.6249 2.1087 -1.2417 14 6 2.0466 1.3379 -2.4191 15 6 1.7108 2.1220 -3.6891 16 1 2.1614 3.1130 -3.6342 17 6 0.2499 2.2536 -3.8127 18 7 -0.8775 2.3552 -3.9080 19 6 2.2608 1.3785 -4.9079 20 6 2.0386 2.2093 -6.1456 21 1 1.5532 3.1712 -6.0703 22 6 2.4540 1.7409 -7.3740 23 7 3.0446 0.5695 -7.4656 24 14 2.1780 2.7704 -8.9082 25 1 2.8795 4.0712 -8.7641 26 1 2.7119 2.0489 -10.0911 27 1 0.7236 3.0097 -9.0885 28 1 -0.3633 0.4656 0.9162 29 1 -0.3633 0.5607 -0.8612 30 1 -0.3633 -1.0262 -0.0548 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9864 0.9895 -0.8046 34 1 3.8781 0.8726 0.9682 35 1 3.9814 2.8635 2.3532 36 1 4.7901 5.1801 2.5563 37 1 5.0392 5.4639 -1.6939 38 1 4.2408 3.1433 -1.8946 39 1 0.6285 2.2672 -1.2513 40 1 3.1216 1.1636 -2.3732 41 1 1.5238 0.3815 -2.4336 42 1 3.3283 1.2028 -4.7752 43 1 1.7459 0.4237 -5.0140 44 1 3.3372 0.2401 -8.3299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569213841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:40 Heat of formation + Delta-G solvation = 17.174718 kcal Electronic energy + Delta-G solvation = -24239.834021 eV Core-core repulsion = 20795.797734 eV Total energy + Delta-G solvation = -3444.036288 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.73739 -38.27347 -36.56665 -36.12833 -33.91048 -32.57047 -32.24738 -31.03895 -30.55282 -28.11733 -26.37087 -24.07182 -23.40223 -22.79890 -21.81130 -21.29113 -19.66000 -17.15103 -16.87068 -16.68615 -16.16596 -15.39188 -15.26697 -15.11217 -14.56000 -14.25974 -14.01531 -13.59230 -13.51191 -13.33675 -13.20848 -12.91454 -12.54552 -12.51897 -12.17649 -12.05830 -11.91480 -11.77978 -11.45967 -11.33235 -11.28539 -11.11244 -10.95078 -10.92608 -10.84260 -10.73552 -10.59215 -10.52789 -10.26628 -9.55615 -9.26665 -9.01184 -8.53652 -8.46964 -8.27609 -6.11394 -4.14560 1.15707 1.32887 2.11511 3.30226 3.34531 3.38286 3.56451 3.62539 3.63419 4.21079 4.40742 4.60370 4.73458 4.79644 4.86468 4.89223 4.98547 5.07227 5.19404 5.26847 5.35193 5.41065 5.46746 5.56126 5.56682 5.64622 5.70325 5.75904 5.81237 5.87599 5.98045 6.07160 6.13046 6.16842 6.21377 6.29338 6.40553 6.51745 6.61711 6.84239 7.11032 7.39530 7.42673 7.50581 7.83512 8.21165 8.39992 8.89804 9.51204 10.99351 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003722 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.979909 B = 7521.147915 C = 9537.387808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.163 4.163 3 C 0.094 3.906 4 H 0.080 0.920 5 C -0.078 4.078 6 C -0.057 4.057 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.042 4.042 10 Cl -0.084 7.084 11 C -0.109 4.109 12 C -0.076 4.076 13 N -0.680 5.680 14 C 0.059 3.941 15 C 0.008 3.992 16 H 0.109 0.891 17 C 0.242 3.758 18 N -0.478 5.478 19 C 0.034 3.966 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.064 3.936 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.340 0.660 40 H 0.091 0.909 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.023 0.977 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 2.561 20.561 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C -0.016 4.016 4 H 0.098 0.902 5 C -0.116 4.116 6 C -0.057 4.057 7 C -0.131 4.131 8 C -0.135 4.135 9 C -0.068 4.068 10 Cl -0.055 7.055 11 C -0.128 4.128 12 C -0.094 4.094 13 N -0.311 5.311 14 C -0.071 4.071 15 C -0.014 4.014 16 H 0.126 0.874 17 C -0.074 4.074 18 N -0.155 5.155 19 C -0.005 4.005 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.718 3.282 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.009 3.166 20.285 20.918 hybrid contribution -0.360 -0.049 -0.960 1.027 sum 3.649 3.117 19.324 19.911 Atomic orbital electron populations 1.21766 0.95760 1.01905 1.01708 1.22300 0.96371 0.98584 1.02922 1.21551 0.94228 0.92426 0.93390 0.90165 1.20754 0.94924 0.92767 1.03141 1.19788 0.96929 0.96267 0.92737 1.20932 1.00293 0.94492 0.97376 1.20912 1.00744 0.94553 0.97280 1.20903 1.04143 0.86390 0.95359 1.98356 1.87760 1.20999 1.98387 1.21117 0.99863 0.95881 0.95900 1.21111 0.96023 0.92951 0.99297 1.60699 1.20562 1.48667 1.01178 1.22190 1.01749 0.94894 0.88284 1.19320 0.82075 1.02963 0.97071 0.87352 1.29297 0.95169 0.91791 0.91167 1.81037 1.13603 1.10259 1.10580 1.19147 0.96939 0.95368 0.89057 1.21104 1.39320 1.04248 0.91853 0.92595 1.24931 0.94870 0.94966 0.99047 1.69920 1.39741 1.18219 1.25126 0.86677 0.78675 0.80460 0.82427 1.19994 1.21189 1.20277 0.92800 0.92763 0.92622 0.90868 0.91621 0.90017 0.90705 0.85743 0.85643 0.85056 0.84403 0.84089 0.89094 0.94180 0.94335 0.95850 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.73 37.16 0.36 -1.14 16 2 C -0.16 -1.46 4.98 -26.73 -0.13 -1.60 16 3 C 0.09 0.87 2.53 -67.71 -0.17 0.70 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.08 -0.68 4.75 -27.88 -0.13 -0.81 16 6 C -0.06 -0.57 4.95 -104.62 -0.52 -1.08 16 7 C -0.11 -1.04 9.70 -39.59 -0.38 -1.42 16 8 C -0.12 -1.15 9.83 -39.55 -0.39 -1.54 16 9 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 10 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 11 C -0.11 -1.24 9.83 -39.55 -0.39 -1.63 16 12 C -0.08 -0.85 9.31 -39.59 -0.37 -1.21 16 13 N -0.68 -7.81 5.61 -106.73 -0.60 -8.41 16 14 C 0.06 0.77 4.16 -3.82 -0.02 0.76 16 15 C 0.01 0.13 2.42 -93.41 -0.23 -0.09 16 16 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 17 C 0.24 4.73 13.07 -20.76 -0.27 4.46 16 18 N -0.48 -10.17 18.54 42.15 0.78 -9.39 16 19 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 20 C -0.53 -13.71 8.60 -34.44 -0.30 -14.01 16 21 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 24 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.62 6.85 -51.93 -0.36 0.27 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.73 6.22 -51.93 -0.32 0.41 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.75 6.19 -51.93 -0.32 0.42 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 1.57 7.72 -52.49 -0.41 1.16 16 39 H 0.34 4.25 6.68 -39.29 -0.26 3.99 16 40 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 41 H 0.04 0.55 6.45 -51.93 -0.33 0.21 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -28.81 378.45 -9.79 -38.61 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.49 Total: 1.23 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.40 Total: -17.08 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.92 Total: -42.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.81 -9.79 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569213841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.780 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds