Wall clock time and date at job start Tue Mar 31 2020 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.08999 * 109.47300 * 56.28849 * 3 2 1 5 5 C 1.53000 * 109.47257 * 176.29189 * 3 2 1 6 6 C 1.50703 * 109.47031 * 185.00122 * 5 3 2 7 7 C 1.38237 * 119.98574 * 90.00105 * 6 5 3 8 8 C 1.38215 * 120.01073 * 179.97438 * 7 6 5 9 9 C 1.38356 * 119.98561 * 0.02562 * 8 7 6 10 10 Cl 1.73599 * 120.01131 * 180.02562 * 9 8 7 11 11 C 1.38349 * 119.97333 * 0.27831 * 9 8 7 12 12 C 1.38211 * 119.98883 * 359.42016 * 11 9 8 13 13 N 1.46901 * 109.47224 * 296.29100 * 3 2 1 14 14 C 1.46905 * 110.99957 * 306.08758 * 13 3 2 15 15 C 1.52994 * 109.47129 * 185.10591 * 14 13 3 16 16 H 1.09000 * 109.47490 * 54.99757 * 15 14 13 17 17 C 1.47199 * 109.47513 * 294.99900 * 15 14 13 18 18 N 5.15903 * 62.18219 * 301.07537 * 2 1 3 19 19 C 1.52998 * 109.47072 * 174.99900 * 15 14 13 20 20 C 1.50708 * 109.47136 * 185.00315 * 19 15 14 21 21 H 1.08002 * 119.99747 * 359.97438 * 20 19 15 22 22 C 1.37878 * 119.99861 * 180.02562 * 20 19 15 23 23 N 1.31507 * 120.00000 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46953 * 59.99458 * 24 22 20 26 26 H 1.48492 * 109.47225 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46862 * 299.99907 * 24 22 20 28 28 H 1.08999 * 109.47050 * 296.93777 * 1 2 3 29 29 H 1.09000 * 109.47150 * 56.93371 * 1 2 3 30 30 H 1.08995 * 109.47006 * 176.94121 * 1 2 3 31 31 H 1.09002 * 109.46949 * 239.99798 * 2 1 3 32 32 H 1.08996 * 109.47040 * 120.00072 * 2 1 3 33 33 H 1.08997 * 109.47263 * 64.99914 * 5 3 2 34 34 H 1.09000 * 109.47096 * 304.99950 * 5 3 2 35 35 H 1.07990 * 119.99728 * 359.97354 * 7 6 5 36 36 H 1.08000 * 120.01080 * 179.97438 * 8 7 6 37 37 H 1.08006 * 120.00453 * 179.69865 * 11 9 8 38 38 H 1.07995 * 120.00060 * 180.29945 * 12 11 9 39 39 H 1.00902 * 111.00006 * 70.03592 * 13 3 2 40 40 H 1.08996 * 109.46699 * 305.10455 * 14 13 3 41 41 H 1.09001 * 109.47230 * 65.10768 * 14 13 3 42 42 H 1.09000 * 109.47416 * 304.99972 * 19 15 14 43 43 H 1.08997 * 109.47495 * 65.00320 * 19 15 14 44 44 H 0.97002 * 119.99899 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6234 1.9752 0.8548 5 6 3.5672 1.4435 0.0933 6 6 4.0619 2.8616 0.2170 7 6 4.2160 3.4331 1.4663 8 6 4.6702 4.7335 1.5803 9 6 4.9702 5.4633 0.4439 10 17 5.5414 7.0965 0.5864 11 6 4.8098 4.8929 -0.8063 12 6 4.3615 3.5904 -0.9189 13 7 1.6249 2.1087 -1.2417 14 6 2.0466 1.3379 -2.4191 15 6 1.7108 2.1220 -3.6891 16 1 2.1614 3.1130 -3.6342 17 6 0.2499 2.2536 -3.8127 18 7 -0.8775 2.3552 -3.9080 19 6 2.2608 1.3785 -4.9079 20 6 2.0386 2.2093 -6.1456 21 1 1.5532 3.1712 -6.0703 22 6 2.4540 1.7409 -7.3740 23 7 3.0446 0.5695 -7.4656 24 14 2.1780 2.7704 -8.9082 25 1 2.8795 4.0712 -8.7641 26 1 2.7119 2.0489 -10.0911 27 1 0.7236 3.0097 -9.0885 28 1 -0.3633 0.4656 0.9162 29 1 -0.3633 0.5607 -0.8612 30 1 -0.3633 -1.0262 -0.0548 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9864 0.9895 -0.8046 34 1 3.8781 0.8726 0.9682 35 1 3.9814 2.8635 2.3532 36 1 4.7901 5.1801 2.5563 37 1 5.0392 5.4639 -1.6939 38 1 4.2408 3.1433 -1.8946 39 1 0.6285 2.2672 -1.2513 40 1 3.1216 1.1636 -2.3732 41 1 1.5238 0.3815 -2.4336 42 1 3.3283 1.2028 -4.7752 43 1 1.7459 0.4237 -5.0140 44 1 3.3372 0.2401 -8.3299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569213841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:39 Heat of formation + Delta-G solvation = 3.723622 kcal Electronic energy + Delta-G solvation = -24240.417305 eV Core-core repulsion = 20795.797734 eV Total energy + Delta-G solvation = -3444.619571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54042 -39.26687 -37.72534 -37.19244 -35.62171 -34.13585 -33.05132 -31.89527 -31.71311 -29.10246 -27.85214 -25.10271 -24.49772 -23.67643 -23.46395 -22.05138 -20.50128 -18.52359 -18.26529 -17.83337 -17.35879 -16.67466 -16.17847 -16.07302 -15.87956 -15.25060 -14.91515 -14.80062 -14.47172 -14.34264 -14.25365 -14.20623 -13.98539 -13.82250 -13.45099 -13.22019 -13.06681 -12.86324 -12.75719 -12.64176 -12.49454 -12.33579 -12.23634 -12.05820 -12.01071 -11.72586 -11.64473 -11.59302 -11.46427 -11.26965 -11.10210 -10.53621 -9.79383 -9.35344 -9.17561 -8.18485 -6.26035 0.37034 0.55430 1.30540 1.41025 1.42213 1.49138 1.98588 2.00954 2.41897 2.85437 3.17087 3.28202 3.30171 3.87198 3.99993 4.10271 4.13524 4.21811 4.28324 4.36763 4.47766 4.47958 4.60375 4.66627 4.73429 4.83085 4.84616 4.91522 4.97067 4.98431 5.02710 5.15024 5.22776 5.27224 5.34064 5.44498 5.45313 5.49188 5.52192 5.65764 5.80817 5.84873 6.08184 6.14101 6.26324 6.45388 6.79264 6.89444 7.42417 8.91994 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003722 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.979909 B = 7521.147915 C = 9537.387808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C 0.099 3.901 4 H 0.090 0.910 5 C -0.075 4.075 6 C -0.058 4.058 7 C -0.109 4.109 8 C -0.119 4.119 9 C -0.055 4.055 10 Cl -0.087 7.087 11 C -0.125 4.125 12 C -0.089 4.089 13 N -0.680 5.680 14 C 0.074 3.926 15 C 0.019 3.981 16 H 0.118 0.882 17 C 0.253 3.747 18 N -0.509 5.509 19 C 0.041 3.959 20 C -0.539 4.539 21 H 0.051 0.949 22 C 0.015 3.985 23 N -0.921 5.921 24 Si 0.943 3.057 25 H -0.264 1.264 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.335 0.665 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.037 0.963 43 H -0.001 1.001 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 2.522 22.480 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C -0.011 4.011 4 H 0.108 0.892 5 C -0.112 4.112 6 C -0.059 4.059 7 C -0.127 4.127 8 C -0.138 4.138 9 C -0.081 4.081 10 Cl -0.059 7.059 11 C -0.144 4.144 12 C -0.107 4.107 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.003 4.003 16 H 0.136 0.864 17 C -0.063 4.063 18 N -0.186 5.186 19 C 0.002 3.998 20 C -0.577 4.577 21 H 0.069 0.931 22 C -0.184 4.184 23 N -0.561 5.561 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.017 0.983 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.404 3.136 22.215 22.864 hybrid contribution -0.491 -0.037 -1.515 1.593 sum 3.913 3.099 20.700 21.294 Atomic orbital electron populations 1.21759 0.96442 1.01635 1.01250 1.22255 0.95655 0.98318 1.03425 1.21606 0.94743 0.92512 0.92245 0.89217 1.20776 0.94115 0.92215 1.04127 1.19948 0.96531 0.96748 0.92633 1.21244 0.99100 0.94279 0.98034 1.21186 1.00151 0.94877 0.97561 1.21051 1.04814 0.86504 0.95757 1.98350 1.87848 1.21284 1.98380 1.21182 1.00725 0.96302 0.96160 1.21149 0.96855 0.93072 0.99655 1.60679 1.20156 1.48717 1.01506 1.21985 1.02537 0.93954 0.87175 1.19244 0.80461 1.03385 0.97165 0.86389 1.29698 0.95543 0.90829 0.90233 1.81033 1.14631 1.11387 1.11577 1.18961 0.96718 0.94178 0.89948 1.21526 1.38430 1.04369 0.93395 0.93050 1.25640 0.95002 0.95967 1.01788 1.70009 1.40920 1.19493 1.25694 0.85837 0.78148 0.79579 0.79557 1.18895 1.20706 1.20808 0.91677 0.94965 0.92639 0.91955 0.89489 0.90505 0.88206 0.82953 0.84027 0.85484 0.85116 0.84704 0.87638 0.94577 0.94453 0.98290 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 71.98 0.70 -2.03 16 2 C -0.16 -2.43 4.98 30.59 0.15 -2.28 16 3 C 0.10 1.56 2.53 44.91 0.11 1.67 16 4 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.07 -1.07 4.75 29.85 0.14 -0.93 16 6 C -0.06 -1.02 4.95 -19.86 -0.10 -1.12 16 7 C -0.11 -1.67 9.70 22.26 0.22 -1.45 16 8 C -0.12 -2.09 9.83 22.29 0.22 -1.87 16 9 C -0.05 -1.16 6.32 22.32 0.14 -1.02 16 10 Cl -0.09 -1.82 28.96 -2.72 -0.08 -1.90 16 11 C -0.12 -2.81 9.83 22.29 0.22 -2.59 16 12 C -0.09 -1.90 9.31 22.27 0.21 -1.69 16 13 N -0.68 -14.59 5.61 -491.57 -2.76 -17.35 16 14 C 0.07 1.87 4.16 86.30 0.36 2.23 16 15 C 0.02 0.66 2.42 -12.60 -0.03 0.63 16 16 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 17 C 0.25 9.87 13.07 89.44 1.17 11.04 16 18 N -0.51 -21.72 18.54 20.01 0.37 -21.35 16 19 C 0.04 1.82 4.42 29.85 0.13 1.95 16 20 C -0.54 -28.18 8.60 25.60 0.22 -27.96 16 21 H 0.05 2.68 7.59 -2.91 -0.02 2.66 16 22 C 0.02 0.82 5.46 84.66 0.46 1.29 16 23 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 24 Si 0.94 43.25 29.54 68.60 2.03 45.28 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.71 6.85 -2.39 -0.02 0.69 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.12 6.22 -2.39 -0.01 1.11 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.21 6.19 -2.39 -0.01 1.19 16 34 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.15 1.47 8.06 -2.92 -0.02 1.44 16 36 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.13 2.90 7.72 -2.91 -0.02 2.88 16 39 H 0.33 7.98 6.68 -89.69 -0.60 7.38 16 40 H 0.11 2.41 5.88 -2.39 -0.01 2.40 16 41 H 0.04 0.96 6.45 -2.39 -0.02 0.95 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 44 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -61.62 378.45 4.58 -57.04 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.41 Total: 14.35 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.32 Total: -24.13 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -2.10 Total: -90.63 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -61.62 4.58 -57.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569213841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.764 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds