Wall clock time and date at job start Tue Mar 31 2020 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.08993 * 109.47162 * 305.90902 * 3 2 1 5 5 C 1.50693 * 109.47100 * 185.90134 * 3 2 1 6 6 H 1.08001 * 120.00603 * 240.00287 * 5 3 2 7 7 C 1.37881 * 119.99742 * 60.00423 * 5 3 2 8 8 N 1.31506 * 120.00044 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99945 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46767 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46809 * 119.99664 * 9 7 5 12 12 H 1.48493 * 109.47129 * 239.99969 * 9 7 5 13 13 N 1.46906 * 109.47047 * 65.90493 * 3 2 1 14 14 C 1.46893 * 111.00042 * 200.62789 * 13 3 2 15 15 C 1.50699 * 109.46826 * 185.09391 * 14 13 3 16 16 O 1.21293 * 120.00433 * 355.20031 * 15 14 13 17 17 N 1.34787 * 119.99546 * 175.20118 * 15 14 13 18 18 C 1.45991 * 118.60033 * 0.83149 * 17 15 14 19 19 C 1.53182 * 108.86121 * 233.58343 * 18 17 15 20 20 S 1.81687 * 107.88966 * 294.37173 * 19 18 17 21 21 C 1.76404 * 102.56884 * 47.02343 * 20 19 18 22 22 C 1.39077 * 118.86295 * 164.09062 * 21 20 19 23 23 C 1.38053 * 120.28995 * 179.28297 * 22 21 20 24 24 C 1.38309 * 119.91153 * 0.03069 * 23 22 21 25 25 C 1.37991 * 120.17118 * 0.19207 * 24 23 22 26 26 C 1.39083 * 121.18832 * 343.75870 * 21 20 19 27 27 H 1.09006 * 109.46980 * 64.76369 * 1 2 3 28 28 H 1.09001 * 109.47308 * 184.76541 * 1 2 3 29 29 H 1.08998 * 109.47030 * 304.77049 * 1 2 3 30 30 H 1.09005 * 109.46928 * 239.99918 * 2 1 3 31 31 H 1.09001 * 109.46741 * 120.00356 * 2 1 3 32 32 H 0.97003 * 119.99944 * 180.02562 * 8 7 5 33 33 H 1.00908 * 110.99512 * 324.57990 * 13 3 2 34 34 H 1.09006 * 109.46722 * 305.08738 * 14 13 3 35 35 H 1.08999 * 109.47487 * 65.09213 * 14 13 3 36 36 H 1.08999 * 109.61150 * 353.38390 * 18 17 15 37 37 H 1.09000 * 109.60754 * 113.89533 * 18 17 15 38 38 H 1.08999 * 109.83169 * 174.72288 * 19 18 17 39 39 H 1.08996 * 109.71095 * 53.95747 * 19 18 17 40 40 H 1.08000 * 119.85497 * 359.31612 * 22 21 20 41 41 H 1.08005 * 120.04927 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.91506 * 180.18041 * 24 23 22 43 43 H 1.08006 * 119.76993 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5930 1.9859 -0.8323 5 6 3.5399 1.4449 -0.1461 6 1 4.1568 1.8853 0.6233 7 6 4.1248 0.8848 -1.2621 8 7 3.3737 0.3481 -2.1987 9 14 5.9840 0.8884 -1.4435 10 1 6.5954 1.5471 -0.2613 11 1 6.4746 -0.5099 -1.5394 12 1 6.3598 1.6303 -2.6737 13 7 1.6702 2.0926 1.2644 14 6 1.6900 3.5552 1.1297 15 6 1.4291 4.1869 2.4728 16 8 1.1588 3.4904 3.4284 17 7 1.4961 5.5258 2.6122 18 6 1.8057 6.3361 1.4379 19 6 2.9978 7.2419 1.7616 20 16 2.4751 8.4141 3.0477 21 6 1.6694 7.3671 4.2167 22 6 1.4268 7.8526 5.4972 23 6 0.7850 7.0637 6.4309 24 6 0.3817 5.7847 6.0929 25 6 0.6227 5.2936 4.8260 26 6 1.2719 6.0787 3.8757 27 1 -0.3633 0.4382 -0.9296 28 1 -0.3634 -1.0241 0.0854 29 1 -0.3633 0.5861 0.8442 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7852 -0.0463 -2.9836 33 1 0.7695 1.7712 1.5862 34 1 2.6657 3.8731 0.7621 35 1 0.9177 3.8658 0.4259 36 1 2.0589 5.6854 0.6009 37 1 0.9430 6.9500 1.1793 38 1 3.3021 7.7863 0.8677 39 1 3.8290 6.6391 2.1274 40 1 1.7412 8.8512 5.7622 41 1 0.5982 7.4448 7.4241 42 1 -0.1229 5.1686 6.8223 43 1 0.3053 4.2937 4.5691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569589576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:24 Heat of formation + Delta-G solvation = 20.736929 kcal Electronic energy + Delta-G solvation = -24806.228415 eV Core-core repulsion = 21364.390302 eV Total energy + Delta-G solvation = -3441.838112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02608 -38.39096 -36.49043 -36.15665 -32.69348 -31.65332 -31.24285 -30.92147 -29.80873 -27.25050 -25.47607 -24.02106 -23.17218 -22.71984 -22.03012 -19.76737 -19.54188 -17.71701 -17.38072 -16.96312 -16.49810 -16.04468 -15.54512 -14.93249 -14.72446 -14.64379 -14.36877 -13.96526 -13.79073 -13.58717 -13.23999 -13.14324 -12.92740 -12.69479 -12.58533 -12.21623 -12.13496 -11.80143 -11.49467 -11.27340 -11.18377 -10.93906 -10.67147 -10.47873 -10.29159 -10.07331 -9.94019 -9.69748 -9.65279 -9.20048 -9.07829 -8.44457 -8.20347 -7.47381 -7.38385 -6.06741 -4.11921 1.06344 1.32130 1.39370 2.15899 2.58842 2.67926 3.24719 3.33887 3.38474 3.70923 4.32222 4.33797 4.39017 4.75424 4.81384 4.86942 5.03521 5.13366 5.22302 5.23679 5.28248 5.41511 5.46543 5.49772 5.68183 5.84862 5.89537 6.04465 6.13425 6.15207 6.23950 6.37357 6.44963 6.55545 6.79973 6.96611 6.99345 7.05901 7.13284 7.37425 7.69671 7.80560 8.05676 8.17052 8.28250 8.61105 8.96028 9.53926 10.98457 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.003592 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.786947 B = 7794.132849 C = 8875.267150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.670 5.670 14 C 0.053 3.947 15 C 0.514 3.486 16 O -0.493 6.493 17 N -0.562 5.562 18 C 0.096 3.904 19 C -0.123 4.123 20 S -0.123 6.123 21 C -0.121 4.121 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.102 4.102 25 C -0.145 4.145 26 C 0.158 3.842 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 14.742 8.774 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.079 4.079 15 C 0.305 3.695 16 O -0.367 6.367 17 N -0.286 5.286 18 C -0.028 4.028 19 C -0.272 4.272 20 S 0.118 5.882 21 C -0.236 4.236 22 C -0.106 4.106 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.166 4.166 26 C 0.058 3.942 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.952 15.399 9.183 18.601 hybrid contribution 0.158 -1.025 -0.725 1.265 sum -4.794 14.375 8.458 17.354 Atomic orbital electron populations 1.21893 0.99517 0.99713 0.99745 1.21726 0.91327 0.99842 1.03268 1.19192 0.95706 0.90416 0.83331 0.98001 1.21215 0.91106 1.37311 1.04177 0.92026 1.24944 0.98148 0.95402 0.95797 1.69872 1.34675 1.39201 1.09515 0.86504 0.85638 0.77828 0.77829 1.19793 1.20998 1.21156 1.60415 1.34740 1.00599 1.34619 1.21783 1.03038 0.92747 0.90363 1.21583 0.75306 0.80176 0.92458 1.90370 1.44994 1.61308 1.40038 1.45570 1.68160 1.07552 1.07353 1.22016 0.97501 0.95221 0.88048 1.24041 1.01271 1.00647 1.01271 1.85368 1.69712 1.13603 1.19484 1.21140 1.07225 0.96735 0.98525 1.20608 0.99549 0.99836 0.90564 1.21032 1.00446 0.94676 0.99172 1.21187 0.99210 0.95352 0.96513 1.22800 0.97840 1.03248 0.92706 1.17634 0.98057 0.92768 0.85707 0.93859 0.94262 0.94519 0.88076 0.93802 0.92993 0.85302 0.87285 0.93042 0.86368 0.89171 0.85333 0.88184 0.85521 0.85770 0.85645 0.80168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.82 37.16 0.36 -2.48 16 2 C -0.12 -2.81 5.39 -26.73 -0.14 -2.96 16 3 C 0.22 5.17 2.02 -68.87 -0.14 5.04 16 4 H 0.00 0.06 7.92 -51.93 -0.41 -0.35 16 5 C -0.50 -13.07 8.32 -34.44 -0.29 -13.35 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.89 -24.25 11.29 55.43 0.63 -23.62 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -13.83 5.86 -109.23 -0.64 -14.47 16 14 C 0.05 0.91 4.26 -4.98 -0.02 0.89 16 15 C 0.51 8.51 7.56 -10.98 -0.08 8.42 16 16 O -0.49 -9.37 12.52 5.55 0.07 -9.31 16 17 N -0.56 -7.93 2.88 -113.59 -0.33 -8.26 16 18 C 0.10 1.03 6.10 -4.22 -0.03 1.00 16 19 C -0.12 -1.22 6.66 37.25 0.25 -0.97 16 20 S -0.12 -1.40 22.12 -107.50 -2.38 -3.78 16 21 C -0.12 -1.62 6.07 -38.96 -0.24 -1.85 16 22 C -0.08 -0.97 9.72 -39.34 -0.38 -1.35 16 23 C -0.13 -1.46 10.05 -39.62 -0.40 -1.86 16 24 C -0.10 -1.25 10.03 -39.65 -0.40 -1.65 16 25 C -0.15 -2.16 8.70 -39.27 -0.34 -2.50 16 26 C 0.16 2.34 6.33 -83.54 -0.53 1.81 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.63 6.32 -51.93 -0.33 0.31 16 30 H 0.10 2.59 5.93 -51.93 -0.31 2.28 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.33 6.47 6.33 -39.29 -0.25 6.22 16 34 H 0.11 1.89 6.97 -51.93 -0.36 1.52 16 35 H 0.05 0.78 8.02 -51.93 -0.42 0.37 16 36 H 0.12 1.15 5.56 -51.93 -0.29 0.86 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.18 2.98 4.72 -56.28 -0.27 2.71 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -29.62 352.76 -10.80 -40.42 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.98 Total: 8.46 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.47 Total: -10.39 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.34 Total: -46.35 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.38 Total: -3.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.62 -10.80 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569589576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.157 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds